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https://www.readbyqxmd.com/read/28449096/two-ribosome-recruitment-sites-direct-multiple-translation-events-within-hiv1-gag-open-reading-frame
#1
Jules Deforges, Sylvain de Breyne, Melissa Ameur, Nathalie Ulryck, Nathalie Chamond, Afaf Saadi, Yann Ponty, Theophile Ohlmann, Bruno Sargueil
In the late phase of the HIV virus cycle, the unspliced genomic RNA is exported to the cytoplasm for the necessary translation of the Gag and Gag-pol polyproteins. Three distinct translation initiation mechanisms ensuring Gag production have been described with little rationale for their multiplicity. The Gag-IRES has the singularity to be located within Gag ORF and to directly interact with ribosomal 40S. Aiming at elucidating the specificity and the relevance of this interaction, we probed HIV-1 Gag-IRES structure and developed an innovative integrative modelling strategy to take into account all the gathered information...
April 26, 2017: Nucleic Acids Research
https://www.readbyqxmd.com/read/28448558/the-herpevac-trial-for-women-sequence-analysis-of-glycoproteins-from-viruses-obtained-from-infected-subjects
#2
Miguel A Minaya, Maria Korom, Hong Wang, Robert B Belshe, Lynda A Morrison
The Herpevac Trial for Women revealed that three dose HSV-2 gD vaccine was 58% protective against culture-positive HSV-1 genital disease, but it was not protective against HSV-2 infection or disease. To determine whether vaccine-induced immune responses had selected for a particular gD sequence in strains infecting vaccine recipients compared with viruses infecting control subjects, genetic sequencing studies were carried out on viruses isolated from subjects infected with HSV-1 or HSV-2. We identified naturally occurring variants among the gD sequences obtained from 83 infected subjects...
2017: PloS One
https://www.readbyqxmd.com/read/28447684/crystal-structure-nir-luminescence-and-x-ray-computed-tomography-of-nd-3-ba0-3lu0-7f2-7-nanospheres
#3
Daniel González-Mancebo, Ana Isabel Becerro, Eugenio Cantelar, Fernando Cussó, Arnaud Briat, Damien Boyer, Manuel Ocaña
Uniform, hydrophilic 50 nm diameter Nd(3+)-doped Ba0.3Lu0.7F2.7 nanospheres are synthesized at 120 °C using a singular one-pot method based on the use of ethylene glycol as solvent, in the absence of any additive. The composition and crystal structure of the undoped material are analyzed in detail using ICP and XRD, which reveals a BaF2 cubic crystal structure that is able to incorporate 70 mol% of Lu ions. This finding contrasts with the reported phase diagram of the system, where the maximum solubility is around 30 mol% Lu...
April 27, 2017: Dalton Transactions: An International Journal of Inorganic Chemistry
https://www.readbyqxmd.com/read/28442741/polarization-conversion-when-focusing-cylindrically-polarized-vortex-beams
#4
Alexey P Porfirev, Andrey V Ustinov, Svetlana N Khonina
Currently, cylindrical beams with radial or azimuthal polarization are being used successfully for the optical manipulation of micro- and nano-particles as well as in microscopy, lithography, nonlinear optics, materials processing, and telecommunication applications. The creation of these laser beams is carried out using segmented polarizing plates, subwavelength gratings, interference, or light modulators. Here, we demonstrate the conversion of cylindrically polarized laser beams from a radial to an azimuthal polarization, or vice versa, by introducing a higher-order vortex phase singularity...
December 5, 2016: Scientific Reports
https://www.readbyqxmd.com/read/28442449/comparative-proteomics-of-hydatid-fluids-from-two-echinococcus-multilocularis-isolates
#5
Karina M Monteiro, Karina R Lorenzatto, Jeferson C de Lima, Guilherme B Dos Santos, Sabine Förster, Gabriela P Paludo, Paulo C Carvalho, Klaus Brehm, Henrique B Ferreira
The hydatid fluid (HF) that fills Echinococcus multilocularis metacestode vesicles is a complex mixture of proteins from both parasite and host origin. Here, a LC-MS/MS approach was used to compare the HF composition of E. multilocularis H95 and G8065 isolates (EmH95 and EmG8065, respectively), which present differences in terms of growth and fertility. Overall, 446 unique proteins were identified, 392 of which (88%) were from parasite origin and 54 from culture medium. At least 256 of parasite proteins were sample exclusive, and 61 of the 136 shared proteins presented differential abundance between E...
April 22, 2017: Journal of Proteomics
https://www.readbyqxmd.com/read/28440326/complex-multifractal-nature-in-mycobacterium-tuberculosis-genome
#6
Saurav Mandal, Tanmoy Roychowdhury, Keilash Chirom, Alok Bhattacharya, R K Brojen Singh
The mutifractal and long range correlation (C(r)) properties of strings, such as nucleotide sequence can be a useful parameter for identification of underlying patterns and variations. In this study C(r) and multifractal singularity function f(α) have been used to study variations in the genomes of a pathogenic bacteria Mycobacterium tuberculosis. Genomic sequences of M. tuberculosis isolates displayed significant variations in C(r) and f(α) reflecting inherent differences in sequences among isolates. M. tuberculosis isolates can be categorised into different subgroups based on sensitivity to drugs, these are DS (drug sensitive isolates), MDR (multi-drug resistant isolates) and XDR (extremely drug resistant isolates)...
April 25, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28439797/desmoid-type-fibromatosis-who-when-and-how-to-treat
#7
REVIEW
Javier Martínez Trufero, Isabel Pajares Bernad, Irene Torres Ramón, Jorge Hernando Cubero, Roberto Pazo Cid
Desmoid-type fibromatosis is a sarcoma subtype that gathers some singular characteristics, making it a difficult challenge to face in clinical practice. Despite its excellent survival prognosis, these tumors may be unpredictable, ranging from an asymptomatic indolent course to persistent, local, and extended recurrences that significantly impair quality of life. Although surgery was initially considered the first elective treatment, collected published data during the past few years are now pointing to the "wait and see" approach as a reasonable initial strategy because many patients can live a long life with the disease without having symptoms...
May 2017: Current Treatment Options in Oncology
https://www.readbyqxmd.com/read/28438722/propagation-of-meandering-rotors-surrounded-by-high-dominant-frequency-areas-in-persistent-atrial-fibrillation
#8
João Salinet, Fernando S Schlindwein, Peter Stafford, Tiago P Almeida, Xin Li, Frederique J Vanheusden, María S Guillem, G André Ng
BACKGROUND: identification of arrhythmogenic regions remains a challenge in persistent atrial fibrillation (persAF). Frequency and phase analysis allows identification of potential ablation targets. OBJECTIVE: This study aims to investigate the spatiotemporal association between dominant frequency (DF) and re-entrant phase activation areas. METHODS: Eight persAF patients undergoing first-time catheter ablation procedure were enrolled. A non-contact array catheter was deployed into the left atrium (LA) and 2048 AF electrograms (AEG) were acquired for 15 seconds following ventricular far-field cancellation...
April 21, 2017: Heart Rhythm: the Official Journal of the Heart Rhythm Society
https://www.readbyqxmd.com/read/28436782/subverting-space-an-exploration-of-a-dance-therapy-workshop-apparatus-for-schizophrenics
#9
Silvia Lippi, Laetitia Petit
The authors created a dance workshop for schizophrenic patients designed to address their singular experience of space, in which the categories of interior and exterior do not function as limits. The space of the workshop, which, paradoxically, is thought in terms of the psychic space of schizophrenic patients by playing on its borderless quality, creates a continuity between the psychiatric hospital and the external world, and thus helps to prevent the segregation and isolation of such patients. This continuity is established on the basis of both the physical architecture of the workshop setting and the practice of dancing itself...
April 2017: Psychoanalytic Review
https://www.readbyqxmd.com/read/28436140/high-pressure-synthesis-of-fully-occupied-tetragonal-and-cubic-tungsten-bronze-oxides
#10
Yuya Ikeuchi, Hiroshi Takatsu, Cédric Tassel, Yoshihiro Goto, Taito Murakami, Hiroshi Kageyama
A high-pressure reaction yielded the fully occupied tetragonal tungsten bronze K3 W5 O15 (K0.6 WO3 ). The terminal phase shows an unusual transport property featuring slightly negative temperature-dependence in resistivity (dρ/dT<0) and a large Wilson ratio of RW =3.2. Such anomalous metallic behavior possibly arises from the low-dimensional electronic structure with a van Hove singularity at the Fermi level and/or from enhanced magnetic fluctuations by geometrical frustration of the tungsten sublattice...
April 24, 2017: Angewandte Chemie
https://www.readbyqxmd.com/read/28432472/anti-infective-and-anti-inflammatory-pharmacotherapies
#11
Mark I Rosenblatt
Ocular infection and inflammation are common and are associated with myriad ocular conditions ranging from mild disease to blinding conditions. There are numerous anti-invectives with spectra against inciting pathogens. Given the potential for ocular infections to rapidly progress initial broad spectrum therapy is usually required, with therapy tailored as microbiological identification and sensitivities become available. The emergence of antibiotic resistance has become a major health problem. Anti-inflammatory therapy can be institutes to prevent ocular symptoms and end-organ damage...
April 22, 2017: Handbook of Experimental Pharmacology
https://www.readbyqxmd.com/read/28430465/elemental-topological-dirac-semimetal-%C3%AE-sn-on-insb-111
#12
Cai-Zhi Xu, Yang-Hao Chan, Yige Chen, Peng Chen, Xiaoxiong Wang, Catherine Dejoie, Man-Hong Wong, Joseph Andrew Hlevyack, Hyejin Ryu, Hae-Young Kee, Nobumichi Tamura, Mei-Yin Chou, Zahid Hussain, Sung-Kwan Mo, Tai-Chang Chiang
Three-dimensional (3D) topological Dirac semimetals (TDSs) are rare but important as a versatile platform for exploring exotic electronic properties and topological phase transitions. A quintessential feature of TDSs is 3D Dirac fermions associated with bulk electronic states near the Fermi level. Using angle-resolved photoemission spectroscopy, we have observed such bulk Dirac cones in epitaxially grown α-Sn films on InSb(111), the first such TDS system realized in an elemental form. First-principles calculations confirm that epitaxial strain is key to the formation of the TDS phase...
April 7, 2017: Physical Review Letters
https://www.readbyqxmd.com/read/28430464/accurate-determination-of-the-quasiparticle-and-scaling-properties-surrounding-the-quantum-critical-point-of-disordered-three-dimensional-dirac-semimetals
#13
Bo Fu, Wei Zhu, Qinwei Shi, Qunxiang Li, Jinlong Yang, Zhenyu Zhang
Exploiting the enabling power of the Lanczos method in momentum space, we determine accurately the quasiparticle and scaling properties of disordered three-dimensional Dirac semimetals surrounding the quantum critical point separating the semimetal and diffusive metal regimes. We unveil that the imaginary part of the quasiparticle self-energy obeys a common power law before, at, and after the quantum phase transition, but the power law is nonuniversal, whose exponent is dependent on the disorder strength. More intriguingly, whereas a common power law is also found for the real part of the self-energy before and after the phase transition, a distinctly different behavior is identified at the critical point, characterized by the existence of a nonanalytic logarithmic singularity...
April 7, 2017: Physical Review Letters
https://www.readbyqxmd.com/read/28430209/singular-skeleton-of-a-laguerre-gaussian-beam-transformed-by-the-double-phase-ramp-converter
#14
Anna Khoroshun, Aleksey Chernykh, Julia Kirichenko, Oleksandr Ryazantsev, Aleksandr Bekshaev
We analyze transformations of circular Laguerre-Gaussian beams with zero radial index after passage through the double-phase-ramp (DPR) converter and study the behavior of optical vortices in the propagating transformed beam. Direct and inverse DPR converters are considered, and informative features of the complete set of optical vortices are revealed. For the input beam with even azimuthal index, such a reaction may cause the sign reversal of the axial optical vortex. The results can be used for creation of light beams with prescribed singular skeleton, for the beam diagnostics, and in high-resolution metrology...
April 20, 2017: Applied Optics
https://www.readbyqxmd.com/read/28429783/fine-structure-of-the-topological-defect-cores-studied-for-disclinations-in-lyotropic-chromonic-liquid-crystals
#15
Shuang Zhou, Sergij V Shiyanovskii, Heung-Shik Park, Oleg D Lavrentovich
The detailed structure of singularities of ordered field represents a fundamental problem in diverse areas of physics. At the defect cores, the deformations are so strong that the system explores states with symmetry different from that of an undistorted material. These regions are difficult to explore experimentally as their spatial extension is very small, a few molecular lengths in the condensed matter. Here we explore the cores of disclinations in the so-called chromonic nematics that extend over macroscopic length scales accessible for optical characterization...
April 21, 2017: Nature Communications
https://www.readbyqxmd.com/read/28429074/ultrastructure-of-pheochromocytoma-undescribed-morphologic-features
#16
A Beiras Fernandez, A Kornberger, M Fraga, C F Vahl, A Beiras
We examined samples of human pheochromocytoma from 11 patients aged 30-70 years including one case of malignant pheochromocytoma with a view to identifying previously unreported ultrastructural details.We identified two types of nuclear inclusions consisting of irregularly shaped singular or multiple granulofibrillar formations with a typical concentric halo, on the one hand, and accumulations of egg-shaped structures consisting of granules and microfilaments, on the other. In some of the tumor cells, membrane-covered inclusions containing parallel laminar elements arranged in a paracrystalline, periodic fashion, or mega-mitrochondriae characterized by increased electrodensity of their matrix, and fibrillary material in the spaces between the cristae were present...
April 20, 2017: Virchows Archiv: An International Journal of Pathology
https://www.readbyqxmd.com/read/28422693/singularities-of-three-layered-complex-valued-neural-networks-with-split-activation-function
#17
Masaki Kobayashi
There are three important concepts related to learning processes in neural networks: reducibility, nonminimality, and singularity. Although the definitions of these three concepts differ, they are equivalent in real-valued neural networks. This is also true of complex-valued neural networks (CVNNs) with hidden neurons not employing biases. The situation of CVNNs with hidden neurons employing biases, however, is very complicated. Exceptional reducibility was found, and it was shown that reducibility and nonminimality are not the same...
April 12, 2017: IEEE Transactions on Neural Networks and Learning Systems
https://www.readbyqxmd.com/read/28420049/the-spectrum-of-neuropsychiatric-lupus-in-a-black-caribbean-population-a-report-of-the-barbados-national-lupus-registry
#18
C Flower, I Hambleton, D Corbin, S Marquez, R Edghill
Objective The objective of this study was to examine neuropsychiatric lupus in a Black Caribbean population. Methods We reviewed Barbados National Lupus Registry patients with ≥4 American College of Rheumatology criteria and a diagnosis of neuropsychiatric lupus using the American College of Rheumatology 19 case definitions. Results From 366 patients with four or more American College of Rheumatology criteria for systemic lupus erythematosus, 55 (15%) had evidence of neuropsychiatric lupus. There were 51 females and four males (F:M = 13:1) with a median age of 31 years...
January 1, 2017: Lupus
https://www.readbyqxmd.com/read/28419608/multiple-breath-hold-proton-spectroscopy-of-human-liver-at-3t-relaxation-times-and-concentrations-of-glycogen-choline-and-lipids
#19
Jan Weis, Joel Kullberg, Håkan Ahlström
PURPOSE: To evaluate the feasibility of an expiration multiple breath-hold (1) H-MRS technique to measure glycogen (Glycg), choline-containing compounds (CCC), and lipid relaxation times T1 , T2 , and their concentrations in normal human liver. MATERIALS AND METHODS: Thirty healthy volunteers were recruited. Experiments were performed at 3T. Multiple expiration breath-hold single-voxel point-resolved spectroscopy (PRESS) technique was used for localization. Water-suppressed spectra were used for the estimation of Glycg, CCC, lipid methylene (CH2 )n relaxation times and concentrations...
April 17, 2017: Journal of Magnetic Resonance Imaging: JMRI
https://www.readbyqxmd.com/read/28418066/a-national-survey-on-the-effect-of-the-geriatric-academic-career-award-in-advancing-academic-geriatric-medicine
#20
Kevin T Foley, Clare C Luz, Katherine V Hanson, Yuning Hao, Elisia M Ray
A workforce that understands principles of geriatric medicine is critical to addressing the care needs of the growing elderly population. This will be impossible without a substantial increase in academicians engaged in education and aging research. Limited support of early-career clinician-educators is a major barrier to attaining this goal. The Geriatric Academic Career Award (GACA) was a vital resource that benefitted 222 junior faculty members. GACA availability was interrupted in 2006, followed by permanent discontinuation after the Geriatrics Workforce Education Program (GWEP) subsumed it in 2015, leaving aspiring clinician-educators with no similar alternatives...
April 18, 2017: Journal of the American Geriatrics Society
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