keyword
MENU ▼
Read by QxMD icon Read
search

plant growth modeling

keyword
https://www.readbyqxmd.com/read/28239421/water-use-of-a-multigenotype-poplar-short-rotation-coppice-from-tree-to-stand-scale
#1
Jasper Bloemen, Régis Fichot, Joanna A Horemans, Laura S Broeckx, Melanie S Verlinden, Terenzio Zenone, Reinhart Ceulemans
Short-rotation coppice (SRC) has great potential for supplying biomass-based heat and energy, but little is known about SRC's ecological footprint, particularly its impact on the water cycle. To this end, we quantified the water use of a commercial scale poplar (Populus) SRC plantation in East Flanders (Belgium) at tree and stand level, focusing primarily on the transpiration component. First, we used the AquaCrop model and eddy covariance flux data to analyse the different components of the stand-level water balance for one entire growing season...
February 2017: Global Change Biology. Bioenergy
https://www.readbyqxmd.com/read/28239369/plant-growth-promoting-bacteria-associated-with-langsdorffia-hypogaea-rhizosphere-host-biological-interface-a-neglected-model-of-bacterial-prospection
#2
Érica B Felestrino, Iara F Santiago, Luana da Silva Freitas, Luiz H Rosa, Sérvio P Ribeiro, Leandro M Moreira
Soil is a habitat where plant roots and microorganisms interact. In the region of the Brazilian Iron Quadrangle (IQ), studies involving the interaction between microbiota and plants have been neglected. Even more neglected are the studies involving the holoparasite plant Langsdorffia hypogaea Mart. (Balanophoraceae). The geomorphological peculiarities of IQ soil, rich in iron ore, as well as the model of interaction between L. hypogaea, its hosts and the soil provide a unique niche that acts as selective pressure to the evolution of plant growth-promoting bacteria (PGPB)...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28238081/dna-methyltransferases-contribute-to-the-fungal-development-stress-tolerance-and-virulence-of-the-entomopathogenic-fungus-metarhizium-robertsii
#3
Yulong Wang, Tiantian Wang, Lintao Qiao, Jianyu Zhu, Jinrui Fan, Tingting Zhang, Zhang-Xun Wang, Wanzhen Li, Anhui Chen, Bo Huang
DNA methylation is an important epigenetic mark in mammals, plants, and fungi and depends on multiple genetic pathways involving de novo and maintenance DNA methyltransferases (DNMTases). Metarhizium robertsii, a model system for investigating insect-fungus interactions, has been used as an environmentally friendly alternative to chemical insecticides. However, little is known concerning the molecular basis for DNA methylation. Here, we report on the roles of two DNMTases (MrRID and MrDIM-2) by characterizing ΔMrRID, ΔMrDIM-2, and ΔRID/ΔDIM-2 mutants...
February 25, 2017: Applied Microbiology and Biotechnology
https://www.readbyqxmd.com/read/28236971/ligand-receptor-mediated-regulation-of-growth-in-plants
#4
Miyoshi Haruta, Michael R Sussman
Growth and development of multicellular organisms are coordinately regulated by various signaling pathways involving the communication of inter- and intracellular components. To form the appropriate body patterns, cellular growth and development are modulated by either stimulating or inhibiting these pathways. Hormones and second messengers help to mediate the initiation and/or interaction of the various signaling pathways in all complex multicellular eukaryotes. In plants, hormones include small organic molecules, as well as larger peptides and small proteins, which, as in animals, act as ligands and interact with receptor proteins to trigger rapid biochemical changes and induce the intracellular transcriptional and long-term physiological responses...
2017: Current Topics in Developmental Biology
https://www.readbyqxmd.com/read/28235802/a-cell-free-method-for-expressing-and-reconstituting-membrane-proteins-enables-functional-characterization-of-the-plant-receptor-like-protein-kinase-feronia
#5
Benjamin B Minkoff, Shin-Ichi Makino, Miyoshi Haruta, Emily T Beebe, Russell L Wrobel, Brian G Fox, Michael R Sussman
There are more than 600 receptor-like kinases (RLKs) in Arabidopsis, but due to challenges associated with the characterization of membrane proteins means, only a few have known biological functions. The plant RLK FERONIA is a peptide receptor and has been implicated in plant growth regulation, but little is known about its molecular mechanism of action. To investigate the properties of this enzyme, we used a cell-free wheat-germ based expression system in which mRNA encoding FERONIA was co-expressed with mRNA encoding the membrane scaffold protein variant MSP1D1...
February 24, 2017: Journal of Biological Chemistry
https://www.readbyqxmd.com/read/28231452/proteome-scale-identification-classification-and-structural-analysis-of-iron-binding-proteins-in-bread-wheat
#6
Shailender Kumar Verma, Ankita Sharma, Padmani Sandhu, Neha Choudhary, Shailaja Sharma, Vishal Acharya, Yusuf Akhter
Bread wheat is one of the major staple foods of worldwide population and iron plays a significant role in growth and development of the plant. In this report, we are presenting the genome wide identification of iron-binding proteins in bread wheat. The wheat genome derived putative proteome was screened for identification of iron-binding sequence motifs. Out of 602 putative iron-binding proteins, 130 were able to produce reliable structural models by homology techniques and further analyzed for the presence of iron-binding structural motifs...
February 14, 2017: Journal of Inorganic Biochemistry
https://www.readbyqxmd.com/read/28228111/antimicrobial-structure-activity-relationship-of-five-anthraquinones-of-emodine-type-isolated-from-vismia-laurentii
#7
Gislaine Aurelie Kemegne, Pierre Mkounga, Jean Justin Essia Ngang, Sylvain Leroy Sado Kamdem, Augustin Ephrem Nkengfack
BACKGROUND: Antimicrobial activity of anthraquinone compounds of emodine type has been reported by many authors. These compounds are found in Vismia laurentii (Clusiaceae), a plant used in traditional pharmacopoeia for treatment of microbial infections among others affections. The continuous identification of new compounds has raised the problem of the relation between the structure and antimicrobial properties. RESULTS: The yeast growth kinetics parameters were not influenced by the pH variation as it was the case for the other tested bacteria...
February 22, 2017: BMC Microbiology
https://www.readbyqxmd.com/read/28226535/probing-the-micromechanics-of-the-fastest-growing-plant-cell-the-pollen-tube
#8
Naveen Shamsudhin, Huseyin Baris Atakan, Nino Laubli, Hannes Vogler, Chengzhi Hu, Abu Sebastian, Ueli Grossniklaus, Bradley J Nelson, Naveen Shamsudhin, Huseyin Baris Atakan, Nino Laubli, Hannes Vogler, Chengzhi Hu, Abu Sebastian, Ueli Grossniklaus, Bradley J Nelson, Hannes Vogler, Ueli Grossniklaus, Nino Laubli, Bradley J Nelson, Naveen Shamsudhin, Huseyin Baris Atakan, Abu Sebastian, Chengzhi Hu
The pollen tube is a fast growing cellular protrusion that plays a key role in the reproductive process of flowering plants. It serves as an important model for studying cellular morphogenesis, anisotropic growth mechanisms, and cellular signaling in the plant sciences. The anisotropic growth of pollen tubes is driven by a finely tuned control of the intracellular turgor pressure and the extensibility of the cell wall. To decipher this internal feedback loop and mathematically model the growth process, a quantitative understanding of the mechanical properties of the cell wall is crucial, in addition to biochemical investigations...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28223993/diacylglycerol-kinases-are-widespread-in-higher-plants-and-display-inducible-gene-expression-in-response-to-beneficial-elements-metal-and-metalloid-ions
#9
Hugo F Escobar-Sepúlveda, Libia I Trejo-Téllez, Paulino Pérez-Rodríguez, Juan V Hidalgo-Contreras, Fernando C Gómez-Merino
Diacylglycerol kinases (DGKs) are pivotal signaling enzymes that phosphorylate diacylglycerol (DAG) to yield phosphatidic acid (PA). The biosynthesis of PA from phospholipase D (PLD) and the coupled phospholipase C (PLC)/DGK route is a crucial signaling process in eukaryotic cells. Next to PLD, the PLC/DGK pathway is the second most important generator of PA in response to biotic and abiotic stresses. In eukaryotic cells, DGK, DAG, and PA are implicated in vital processes such as growth, development, and responses to environmental cues...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28223442/periodic-lateral-root-priming-what-makes-it-tick
#10
Kirsten Hendrika Ten Tusscher, Marta Laskowski
Conditioning small groups of root pericycle cells for future lateral root formation has a major impact on overall plant root architecture. This priming of lateral roots occurs rhythmically, involving temporal oscillations in auxin response in the root tip. During growth, this process generates a spatial pattern of prebranch sites, an early stage in lateral root formation characterized by a stably maintained high auxin response. Thusfar, the molecular mechanism behind this rhythmicity has remained elusive. Some data implicate a cell-autonomous oscillation in gene expression, while others strongly support the importance of tissue-level modulations in auxin fluxes...
February 21, 2017: Plant Cell
https://www.readbyqxmd.com/read/28220140/nbs-lrr-protein-pik-h4-interacts-with-osbihd1-to-balance-rice-blast-resistance-and-growth-by-coordinating-ethylene-brassinosteroid-pathway
#11
Hao Liu, Shuangyu Dong, Fengwei Gu, Wei Liu, Guili Yang, Ming Huang, Wuming Xiao, Yongzhu Liu, Tao Guo, Hui Wang, Zhiqiang Chen, Jiafeng Wang
The regulation of innate immunity and plant growth, along with the trade-off between them, affects the defense and recovery mechanisms of the plant after it is attacked by pathogens. Although it is known that hormonal crosstalk plays a major role in regulating interaction of plant growth and PAMP-triggered immunity, the relationship between plant growth and effector-triggered immunity (ETI) remains unclear. In a large-scale yeast two-hybrid screening for Pik-H4-interacting proteins, a homeodomain transcription factor OsBIHD1 was identified, which is previously known to function in biotic and abiotic stress responses...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28220129/no-silver-bullet-canonical-poly-adp-ribose-polymerases-parps-are-no-universal-factors-of-abiotic-and-biotic-stress-resistance-of-arabidopsis-thaliana
#12
Dagmar Rissel, Peter P Heym, Kathrin Thor, Wolfgang Brandt, Ludger A Wessjohann, Edgar Peiter
Abiotic and biotic stress can have a detrimental impact on plant growth and productivity. Hence, there is a substantial demand for key factors of stress responses to improve yield stability of crops. Members of the poly(ADP-ribose)polymerase (PARP) protein family, which post-translationally modify (PARylate) nuclear proteins, have been suggested as such universal determinants of plant stress responses. A role under abiotic stress has been inferred from studies in which a genetic or, more commonly, pharmacological inhibition of PARP activity improved the performance of stressed plants...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28220113/diverse-plant-associated-pleosporalean-fungi-from-saline-areas-ecological-tolerance-and-nitrogen-status-dependent-effects-on-plant-growth
#13
Yuan Qin, Xueyu Pan, Christian Kubicek, Irina Druzhinina, Komal Chenthamara, Jessy Labbé, Zhilin Yuan
Similar to mycorrhizal mutualists, the rhizospheric and endophytic fungi are also considered to act as active regulators of host fitness (e.g., nutrition and stress tolerance). Despite considerable work in selected model systems, it is generally poorly understood how plant-associated fungi are structured in habitats with extreme conditions and to what extent they contribute to improved plant performance. Here, we investigate the community composition of root and seed-associated fungi from six halophytes growing in saline areas of China, and found that the pleosporalean taxa (Ascomycota) were most frequently isolated across samples...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28215794/the-spatiotemporal-variation-analysis-of-virtual-water-for-agriculture-and-livestock-husbandry-a-study-for-jilin-province-in-china
#14
Xiaolei Ma, Yanji Ma
With the rapid development of economic, water crisis is becoming more and more serious and would be an important obstacle to the sustainable development of society. Virtual water theory and its applications in agriculture can provide important strategies for realizing the reasonable utilization and sustainable development of water resources. Using the Penman-Monteith model and Theil index combining the CROPWAT software, this work takes Jilin Province as study area quantifying the virtual water content of agriculture and livestock husbandry and giving a comprehensive evaluation of their spatiotemporal structure evolution...
February 16, 2017: Science of the Total Environment
https://www.readbyqxmd.com/read/28215337/in-vivo-analysis-of-morphogenesis-in-plants
#15
T Stanislas, O Hamant, J Traas
Although many molecular regulators of morphogenesis have been identified in plants, it remains largely unknown how the molecular networks influence local cell shape and how cell growth, form, and position are coordinated during tissue and organ formations. So far, analyses of gene function in morphogenesis have mainly focused on the qualitative analysis of phenotypes, often providing limited mechanistic insight into how particular factors act. For this reason, there has been a growing interest in mathematical and computational models to formalize and test hypotheses...
2017: Methods in Cell Biology
https://www.readbyqxmd.com/read/28214450/in-silico-structural-and-functional-analysis-of-mesorhizobium-acc-deaminase
#16
Krishnendu Pramanik, Tithi Soren, Soumik Mitra, Tushar Kanti Maiti
Nodulation is one of the very important processes of legume plants as it is the initiating event of fixing nitrogen. Although ethylene has essential role in normal plant metabolism but it has also negative impact on plants particularly in nodule formation in legume plants. It is also produced due to a variety of biotic or abiotic stresses. 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase is a rhizobial enzyme which cleaves ACC (immediate precursor of ethylene) into α-ketobutyrate and ammonia. As a result, the level of ethylene from the plant cells is decreased and the negative impact of ethylene on nodule formation is reduced...
February 11, 2017: Computational Biology and Chemistry
https://www.readbyqxmd.com/read/28213735/microalgae-based-advanced-municipal-wastewater-treatment-for-reuse-in-water-bodies
#17
REVIEW
Jing-Han Wang, Tian-Yuan Zhang, Guo-Hua Dao, Xue-Qiao Xu, Xiao-Xiong Wang, Hong -Ying Hu
Reuse of secondary municipal effluent from wastewater treatment plants in water bodies could effectively alleviate freshwater resource shortage. However, excessive nutrients must be efficiently removed to prevent eutrophication. Compared with other means of advanced wastewater treatment, microalgae-based processes display overwhelming advantages including efficient and simultaneous N and P removal, no requirement of additional chemicals, O2 generation, CO2 mitigation, and potential value-added products from harvested biomass...
February 17, 2017: Applied Microbiology and Biotechnology
https://www.readbyqxmd.com/read/28212386/comparison-of-theoretical-and-experimental-values-for-plant-uptake-of-pesticide-from-soil
#18
Jeong-In Hwang, Sung-Eun Lee, Jang-Eok Kim
Pesticides that persist in soils may be taken up by the roots of plants. One way to assess plant uptake is to theoretically predict the extent of plant uptake using a mathematical model. In this study, a model was developed to predict plant uptake of pesticide residues in soils using various parameters, such as pesticide mobility within soil, plant transpiration stream, root-soil transfer rate, plant growth, and pesticide dissipation in either soils or plants. The accuracy of the model was evaluated by comparing the modeled concentrations with measured uptake concentrations of chlorpyrifos (CP) in lettuce, grown on treated soils with concentrations of approximately 10 and 20 mg kg-1 CP...
2017: PloS One
https://www.readbyqxmd.com/read/28208232/non-linear-co2-flux-response-to-seven-years-of-experimentally-induced-permafrost-thaw
#19
Marguerite Mauritz, Rosvel Bracho, Gerardo Celis, Jack Hutchings, Susan M Natali, Elaine Pegoraro, Verity G Salmon, Christina Schädel, Elizabeth E Webb, Edward A G Schuur
Rapid Arctic warming is expected to increase global greenhouse gas concentrations as permafrost thaw exposes immense stores of frozen carbon (C) to microbial decomposition. Permafrost thaw also stimulates plant growth, which could offset C loss. Using data from seven years of experimental Air and Soil warming in moist acidic tundra, we show that Soil warming had a much stronger effect on CO2 flux than Air warming. Soil warming caused rapid permafrost thaw and increased ecosystem respiration (Reco), gross primary productivity (GPP), and net summer CO2 storage (NEE)...
February 16, 2017: Global Change Biology
https://www.readbyqxmd.com/read/28198917/environmental-drivers-on-leaf-phenology-of-ironstone-outcrops-species-under-seasonal-climate
#20
Letícia C Garcia, Fernanda V Barros, José P Lemos-Filho
Banded iron formations (BIF) have a particular vegetation type and provide a good model system for testing theories related to leaf phenology, due to unique stressful environmental conditions. As a consequence of the stressful conditions of BIF environment, we hypothesize that most species would retain at least some significant canopy cover, even at the end of the dry season, independently of growth form - trees, shrubs, and sub-shrubs. Considering the strong seasonality, we also hypothesize that photoperiod and rainfall act as triggers for leaf fall and leaf flushing in these environments...
February 9, 2017: Anais da Academia Brasileira de Ciências
keyword
keyword
55495
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"