keyword
https://read.qxmd.com/read/37670335/integrated-transcriptomic-and-proteomic-analyses-of-plerocercoid-and-adult-spirometra-mansoni-reveal-potential-important-pathways-in-the-development-of-the-medical-tapeworm
#1
JOURNAL ARTICLE
Rui Jie Wang, Wen Li, Shi Nan Liu, Si Yao Wang, Peng Jiang, Zhong Quan Wang, Xi Zhang
BACKGROUND: Spirometra mansoni can parasitize animals and humans through food and water, causing parasitic zoonosis. Knowledge of the developmental process of S. mansoni is crucial for effective treatment; thus, it is important to characterize differential and specific proteins and pathways associated with parasite development. METHODS: In this study, we performed a comparative proteomic analysis of the plerocercoid and adult stages using a tandem mass tag-based quantitative proteomic approach...
September 5, 2023: Parasites & Vectors
https://read.qxmd.com/read/36009873/mutational-analyses-of-the-cysteine-rich-domain-of-yvh1-a-protein-required-for-translational-competency-in-yeast
#2
JOURNAL ARTICLE
Hannah Zang, Robert Shackelford, Alice Bewley, Alexander E Beeser
Ribosome assembly is a complex biological process facilitated by >200 trans -acting factors (TAFs) that function as scaffolds, place-holders or complex remodelers to promote efficient and directional ribosomal subunit assembly but are not themselves part of functional ribosomes. One such yeast TAF is encoded by Mrt4 which assembles onto pre-60S complexes in the nuclear compartment and remains bound to pre-60S complexes as they are exported into the cytoplasm. There, Mrt4 is displaced from pre-60S complexes facilitating the subsequent addition of the ribosomal stalk complex (P0/P1/P2)...
August 22, 2022: Biology
https://read.qxmd.com/read/33921564/a-comparative-analysis-of-erythropoietin-and-carbamoylated-erythropoietin-proteome-profiles
#3
JOURNAL ARTICLE
Neeraj K Tiwari, Monica Sathyanesan, Vikas Kumar, Samuel S Newton
In recent years, erythropoietin (EPO) has emerged as a useful neuroprotective and neurotrophic molecule that produces antidepressant and cognitive-enhancing effects in psychiatric disorders. However, EPO robustly induces erythropoiesis and elevates red blood cell counts. Chronic administration is therefore likely to increase blood viscosity and produce adverse effects in non-anemic populations. Carbamoylated erythropoietin (CEPO), a chemically engineered modification of EPO, is non-erythropoietic but retains the neurotrophic and neurotrophic activity of EPO...
April 19, 2021: Life
https://read.qxmd.com/read/33113002/improvement-of-dc-based-vaccines-using-adjuvant-tlr4-binding-60s-acidic-ribosomal-protein-p2-and-immune-checkpoint-inhibitors
#4
JOURNAL ARTICLE
Gun-Young Jang, Young Seob Kim, Sung Eun Lee, Ji Won Lee, Hee Dong Han, Tae Heung Kang, Yeong-Min Park
Cancer immunotherapy has fewer side effects and higher efficiency than conventional methods. Dendritic cell (DC)-based vaccine, a cancer immunotherapeutic, is prepared by processing mature DCs and pulsing with tumor antigen peptide ex vivo, to induce the activation of tumor-specific T lymphocytes followed by tumor clearance in vivo. Unfortunately, clinical trials of this method mostly failed due to low patient response, possibly due to the absence of novel adjuvants that induce DC maturation through Toll-like receptor (TLR) signals...
October 28, 2020: Cancer Immunology, Immunotherapy: CII
https://read.qxmd.com/read/29130972/human-dendritic-cells-with-th2-polarizing-capacity-analysis-using-label-free-quantitative-proteomics
#5
JOURNAL ARTICLE
Leonie Hussaarts, Maria Mardalena Martini Kaisar, Arzu Tugce Guler, Hans Dalebout, Bart Everts, André M Deelder, Magnus Palmblad, Maria Yazdanbakhsh
BACKGROUND: Dendritic cells (DCs) are the sentinels of the immune system. Upon recognition of a pathogen, they mature and migrate to draining lymph nodes to prime and polarize T cell responses. Although it is known that helminths and helminth-derived molecules condition DCs to polarize T helper (Th) cells towards Th2, the underlying mechanisms remain incompletely understood. OBJECTIVES: The aim of this study was to conduct a proteome analysis of helminth antigen-stimulated DCs in order to gain more insight into the cellular processes associated with their ability to polarize immune responses...
2017: International Archives of Allergy and Immunology
https://read.qxmd.com/read/24922111/the-p1-p2-protein-heterodimers-assemble-to-the-ribosomal-stalk-at-the-moment-when-the-ribosome-is-committed-to-translation-but-not-to-the-native-60s-ribosomal-subunit-in-saccharomyces-cerevisiae
#6
JOURNAL ARTICLE
A Bautista-Santos, S Zinker
The four structural acidic ribosomal proteins that dissociate from P1A/P2B and P1B/P2A heterodimers of Saccharomyces cerevisiae were searched in the 60S ribosomal subunit, the 80S monosome, and the polysomal fractions after ribosome profile centrifugation in sucrose gradients in TMN buffer, and after dissociation of monosomes and polysomes to small and large ribosomal subunits in LMS buffer. Analysis by isoelectric focusing, sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and Western blotting of these fractions or the purified acidic protein samples showed eight bands that correspond to the acidic ribosomal proteins in the 60S dissociated subunits of the 80S monosome and polysomes...
July 1, 2014: Biochemistry
https://read.qxmd.com/read/24391917/phosphorylation-of-initiation-factor-eif2-in-response-to-stress-conditions-is-mediated-by-acidic-ribosomal-p1-p2-proteins-in-saccharomyces-cerevisiae
#7
JOURNAL ARTICLE
Antonio Jiménez-Díaz, Miguel Remacha, Juan P G Ballesta, Juan José Berlanga
Eukaryotic cells contain an unusually large cytoplasmic pool of P1/P2 phosphoproteins, which form the highly flexible 60S subunit stalk that is required to interact with and activate soluble translation factors. In cells, cytoplasmic P1/P2 proteins are exchanged for ribosome-bound proteins in a process that can modulate ribosome function and translation. Here, we analysed different S. cerevisiae stalk mutants grown under stress conditions that result in eIF2α phosphorylation. These mutants either lack a cytoplasmic pool of stalk proteins or contain free but not ribosome-bound proteins...
2013: PloS One
https://read.qxmd.com/read/22912579/arrest-of-nuclear-division-in-plasmodium-through-blockage-of-erythrocyte-surface-exposed-ribosomal-protein-p2
#8
JOURNAL ARTICLE
Sudipta Das, Himanish Basu, Reshma Korde, Rita Tewari, Shobhona Sharma
Malaria parasites reside inside erythrocytes and the disease manifestations are linked to the growth inside infected erythrocytes (IE). The growth of the parasite is mostly confined to the trophozoite stage during which nuclear division occurs followed by the formation of cell bodies (schizogony). The mechanism and regulation of schizogony are poorly understood. Here we show a novel role for a Plasmodium falciparum 60S stalk ribosomal acidic protein P2 (PfP2) (PFC0400w), which gets exported to the IE surface for 6-8 hrs during early schizogony, starting around 26-28 hrs post-merozoite invasion...
2012: PLoS Pathogens
https://read.qxmd.com/read/22567147/nmr-insights-into-folding-and-self-association-of-plasmodium-falciparum-p2
#9
JOURNAL ARTICLE
Pushpa Mishra, Sudipta Das, Lata Panicker, Madhusoodan V Hosur, Shobhona Sharma, Ramakrishna V Hosur
The eukaryotic 60S-ribosomal stalk is composed of acidic ribosomal proteins (P1 and P2) and neutral protein P0, which are thought to be associated as a pentameric structure, [2P1, 2P2, P0]. Plasmodium falciparum P2 (PfP2) appears to play additional non-ribosomal functions associated with its tendency for homo-oligomerization. Recombinant bacterially expressed PfP2 protein also undergoes self-association, as shown by SDS-PAGE analysis and light scattering studies. Secondary structure prediction algorithms predict the native PfP2 protein to be largely helical and this is corroborated by circular dichroism investigation...
2012: PloS One
https://read.qxmd.com/read/22275522/p1-and-p2-protein-heterodimer-binding-to-the-p0-protein-of-saccharomyces-cerevisiae-is-relatively-non-specific-and-a-source-of-ribosomal-heterogeneity
#10
JOURNAL ARTICLE
David Cárdenas, Jesús Revuelta-Cervantes, Antonio Jiménez-Díaz, Hendricka Camargo, Miguel Remacha, Juan P G Ballesta
The ribosomal stalk is formed by four acidic phosphoproteins in Saccharomyces cerevisiae, P1α, P1β, P2α and P2β, which form two heterodimers, P1α/P2β and P1β/P2α, that preferentially bind to sites A and B of the P0 protein, respectively. Using mutant strains carrying only one of the four possible P1/P2 combinations, we found a specific phenotype associated to each P1/P2 pair, indicating that not all acidic P proteins play the same role. The absence of one P1/P2 heterodimer reduced the rate of cell growth by varying degrees, depending on the proteins missing...
May 2012: Nucleic Acids Research
https://read.qxmd.com/read/20410328/cloning-and-characterization-of-the-acidic-ribosomal-protein-p2-of-cryptosporidium-parvum-a-new-17-kilodalton-antigen
#11
JOURNAL ARTICLE
Jeffrey W Priest, James P Kwon, Joel M Montgomery, Caryn Bern, Delynn M Moss, Amanda R Freeman, Cara C Jones, Michael J Arrowood, Kimberly Y Won, Patrick J Lammie, Robert H Gilman, Jan R Mead
Cryptosporidium infection is commonly observed among children and immunocompromised individuals in developing countries, but large-scale outbreaks of disease among adults have not been reported. In contrast, outbreaks of cryptosporidiosis in the United States and Canada are increasingly common among patients of all ages. Thus, it seems likely that residents of regions where Cryptosporidium is highly endemic acquire some level of immunity, while residents of the developed world do not. A new immunodominant Cryptosporidium parvum antigen in the 15- to 17-kDa size range was identified as the Cryptosporidium parvum 60S acidic ribosomal protein P2 (CpP2)...
June 2010: Clinical and Vaccine Immunology: CVI
https://read.qxmd.com/read/20407759/antigen-subtracted-2-de-ms-strategy-a-novel-proteomic-analysis-platform
#12
JOURNAL ARTICLE
Peng Zhao, Lijuan Zhang, Weijian Zhong, Xianping Ying, He Huang, Biyun Yao, Zhun Yuan, Juanling Fu, Yuedan Wang, Zongcan Zhou
In the present study, we developed a novel proteomic research strategy named antigen-subtracted 2-DE/MS strategy and applied it to comparative proteomic analysis of anti-benzo(a)pyrene-7,8-dihydrodiol-9,10-epoxide-transformed human bronchial epithelial cell line (16HBE-C) and its parental cell line (16HBE) G0/G1 cells. Following pre-purification by ammonium sulfate precipitation, rabbit antibodies against 16HBE G0/G1 cells were coupled with protein A/G PLUS-agarose under the maximal coupling rate of about 50%...
January 2011: Archives of Toxicology
https://read.qxmd.com/read/20385220/2-3-7-8-tetrachlorodibenzo-p-dioxin-up-regulates-stathmin-1-in-the-eye-suggestive-evidence-for-the-involvement-of-stathmin-1-in-accelerated-eye-opening-in-mice-induced-by-2-3-7-8-tetrachlorodibenzo-p-dioxin
#13
JOURNAL ARTICLE
Dah-Won Gin, Hye-Rin Kim, Dong-Min Lee, Seung-Hun Lee, Ah-Reum Seong, Ju-Ae Hwang, Joo-Hung Park
When pregnant mice were exposed to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), the average time to eye opening in the offspring was shortened by about a day. How acceleration of eye opening by TCDD occurs remains unknown. To reveal the underlying mechanisms of the accelerated eye opening, pregnant mice were intraperitoneally injected with corn oil or TCDD at GD (gestation day) 11, and tissues around the eye of neonatal mice were subject to proteome analysis and RT-PCR. Upon TCDD administration, translationally controlled tumor protein (TCTP) and 60S acidic ribosomal protein p2 (RLA2) were reduced, while stathmin 1(STMN1) was increased, at both protein and mRNA levels...
July 1, 2010: Toxicology Letters
https://read.qxmd.com/read/15734919/proteomic-characterization-of-evolutionarily-conserved-and-variable-proteins-of-arabidopsis-cytosolic-ribosomes
#14
JOURNAL ARTICLE
Ing-Feng Chang, Kathleen Szick-Miranda, Songqin Pan, Julia Bailey-Serres
Analysis of 80S ribosomes of Arabidopsis (Arabidopsis thaliana) by use of high-speed centrifugation, sucrose gradient fractionation, one- and two-dimensional gel electrophoresis, liquid chromatography purification, and mass spectrometry (matrix-assisted laser desorption/ionization time-of-flight and electrospray ionization) identified 74 ribosomal proteins (r-proteins), of which 73 are orthologs of rat r-proteins and one is the plant-specific r-protein P3. Thirty small (40S) subunit and 44 large (60S) subunit r-proteins were confirmed...
March 2005: Plant Physiology
https://read.qxmd.com/read/14997482/identification-and-characterization-of-phosphorylated-proteins-in-the-human-pituitary
#15
JOURNAL ARTICLE
Francesco Giorgianni, Sarka Beranova-Giorgianni, Dominic M Desiderio
Post-translational modifications of proteins from the human pituitary gland play an important role in the regulation of different body functions. We report on the application of a liquid chromatography-tandem mass spectrometry (MS/MS) based approach to detect and characterize phosphorylated proteins in a whole human pituitary digest. By combining an immobilized metal affinity column-based enrichment method with MS/MS conditions that favor the neutral loss of phosphoric acid from a phosphorylated precursor ion, we identified several previously undescribed phosphorylated peptides...
March 2004: Proteomics
https://read.qxmd.com/read/12743577/immediate-type-hypersensitivity-reaction-to-ingestion-of-mycoprotein-quorn-in-a-patient-allergic-to-molds-caused-by-acidic-ribosomal-protein-p2
#16
JOURNAL ARTICLE
Michael Hoff, Ralph M Trüeb, Barbara K Ballmer-Weber, Stefan Vieths, Brunello Wuethrich
BACKGROUND: Quorn is the brand name for a line of foods made with so-called "mycoprotein," which springs from the mold Fusarium venenatum. Since the introduction on the food market, there have been complaints from consumers reporting adverse gastrointestinal reactions after ingestion of mycoprotein. To date, it is not clear whether the reported symptoms are IgE-mediated. OBJECTIVE: The aim of the study was to describe for the first time a case history of an asthmatic patient with severe hypersensitivity reactions to ingested mycoprotein and to identify and characterize the potential allergen that might be responsible for this...
May 2003: Journal of Allergy and Clinical Immunology
https://read.qxmd.com/read/12695122/molecular-cloning-and-immunological-characterisation-of-potential-allergens-from-the-mould-fusarium-culmorum
#17
JOURNAL ARTICLE
M Hoff, B K Ballmer-Weber, B Niggemann, A Cistero-Bahima, M San Miguel-Moncín, A Conti, D Haustein, S Vieths
BACKGROUND: High quality and stability are essential requirements of commercial allergen preparations. Recently we have demonstrated the very low stability of protein allergens in an extract of the ubiquitous mould Fusarium culmorum. OBJECTIVE: The present study was performed to identify, isolate and characterise allergens of F. culmorum as a basis for a stable allergenic reference material. In addition, the significance of IgE binding to carbohydrate structures in the natural allergen source was investigated...
May 2003: Molecular Immunology
https://read.qxmd.com/read/12379128/beta-2-adrenergic-receptor-stimulated-g-protein-coupled-receptor-kinase-2-mediated-phosphorylation-of-ribosomal-protein-p2
#18
JOURNAL ARTICLE
Jennifer L R Freeman, Philippe Gonzalo, Julie A Pitcher, Audrey Claing, Jean-Pierre Lavergne, Jean-Paul Reboud, Robert J Lefkowitz
G protein-coupled receptor kinases are well characterized for their ability to phosphorylate and desensitize G protein-coupled receptors (GPCRs). In addition to phosphorylating the beta2-adrenergic receptor (beta2AR) and other receptors, G protein-coupled receptor kinase 2 (GRK2) can also phosphorylate tubulin, a nonreceptor substrate. To identify novel nonreceptor substrates of GRK2, we used two-dimensional gel electrophoresis to find cellular proteins that were phosphorylated upon agonist-stimulation of the beta2AR in a GRK2-dependent manner...
October 22, 2002: Biochemistry
https://read.qxmd.com/read/12007628/the-acidic-ribosomal-p-proteins
#19
REVIEW
Marek Tchórzewski
The acidic ribosomal P proteins (pI 3-4) are unique among ribosomal constituents: the only molecules on the ribosomes existing in multiple copies, they form a hetero-oligomeric complex (P1/P2)(2) recognizable as a lateral protuberance on the 60S ribosomal subunit, which is thought to be directly involved in interactions with elongation factors during the course of protein synthesis. The role of P proteins in translation is still vague; however, they might possess two functional roles-the proteins may increase performance of ribosomes and/or change ribosomal specificity toward different subset of mRNAs...
August 2002: International Journal of Biochemistry & Cell Biology
https://read.qxmd.com/read/11861379/two-forms-of-gonadotropin-releasing-hormone-gnrh-are-expressed-in-human-breast-tissue-and-overexpressed-in-breast-cancer-a-putative-mechanism-for-the-antiproliferative-effect-of-gnrh-by-down-regulation-of-acidic-ribosomal-phosphoproteins-p1-and-p2
#20
JOURNAL ARTICLE
Alon Chen, Ella Kaganovsky, Shai Rahimipour, Nurit Ben-Aroya, Eli Okon, Yitzhak Koch
Gonadotropin-releasing hormone (GnRH) analogues are used for the treatment of breast, prostate, and ovarian cancer. These analogues exert their antitumor effects indirectly by inhibiting the pituitary-gonadal axis, as well as by direct inhibition of proliferation of human breast cancer cells. However, the molecular mechanisms mediating these direct antiproliferative effects are not fully understood. We found that normal and malignant human breast tissue express two forms of the neuropeptide GnRH. Quantitative reverse transcription-PCR shows that mRNA encoding the GnRH-I and GnRH-II peptides are overexpressed in cancerous versus normal tissues obtained from the same patients...
February 15, 2002: Cancer Research
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