keyword
https://read.qxmd.com/read/38606108/impact-of-bias-field-correction-on-0-35-t-pelvic-mr-images-evaluation-on-generative-adversarial-network-based-oars-auto-segmentation-and-visual-grading-assessment
#21
JOURNAL ARTICLE
Marica Vagni, Huong Elena Tran, Francesco Catucci, Giuditta Chiloiro, Andrea D'Aviero, Alessia Re, Angela Romano, Luca Boldrini, Maria Kawula, Elia Lombardo, Christopher Kurz, Guillaume Landry, Claus Belka, Luca Indovina, Maria Antonietta Gambacorta, Davide Cusumano, Lorenzo Placidi
PURPOSE: Magnetic resonance imaging (MRI)-guided radiotherapy enables adaptive treatment plans based on daily anatomical changes and accurate organ visualization. However, the bias field artifact can compromise image quality, affecting diagnostic accuracy and quantitative analyses. This study aims to assess the impact of bias field correction on 0.35 T pelvis MRIs by evaluating clinical anatomy visualization and generative adversarial network (GAN) auto-segmentation performance. MATERIALS AND METHODS: 3D simulation MRIs from 60 prostate cancer patients treated on MR-Linac (0...
2024: Frontiers in Oncology
https://read.qxmd.com/read/38605742/recombinant-production-of-tp4-lyc1-a-new-chimeric-peptide-with-targeted-cytotoxicity-to-hela-cells
#22
JOURNAL ARTICLE
Hanieh Mohammad Pour, Ali Jahanian-Najafabadi, Fatemeh Shafiee
BACKGROUND: Tilapia Piscidin 4 (TP4) showed potential anti-tumor effects against various cancer cells. Lycosine-1 (LYC1), is another Antimicrobial Peptides (AMP) from spider venom with targeted penetration to cancer cells without any adverse effects on normal cells. The aim of this study was to produce a soluble recombinant fusion peptide in order to diminish the cytotoxicity of TP4 against normal cells. METHODS: In order to express of TP4-LYC-1, TP4, and LYC1 in fusion to the inteins1/2 of pTWIN-1 vector, induction condition was optimized to earn soluble peptides...
2024: Avicenna Journal of Medical Biotechnology
https://read.qxmd.com/read/38605068/slow-response-of-surface-water-temperature-to-fast-atmospheric-variability-reveals-mixing-heterogeneity-in-a-deep-lake
#23
JOURNAL ARTICLE
Marina Amadori, Mariano Bresciani, Claudia Giardino, Henk A Dijkstra
Slow and long-term variations of sea surface temperature anomalies have been interpreted as a red-noise response of the ocean surface mixed layer to fast and random atmospheric perturbations. How fast the atmospheric noise is damped depends on the mixed layer depth. In this work we apply this theory to determine the relevant spatial and temporal scales of surface layer thermal inertia in lakes. We fit a first order auto-regressive model to the satellite-derived Lake Surface Water Temperature (LSWT) anomalies in Lake Garda, Italy...
April 11, 2024: Scientific Reports
https://read.qxmd.com/read/38604312/fbxo43-promotes-cell-cycle-progression-in-cancer-cells-through-stabilizing-skp2
#24
JOURNAL ARTICLE
Liyun Zheng, Jiajia Shen, Yang Chen, Jingyu Lin, Pengyu Li, Xiaoli Zhao, Hangjiang Ren, Yi Sun, Zhen Wang
FBXO43 is a member of the FBXO subfamily of F-box proteins, known to be a regulatory hub during meiosis. A body of data showed that FBXO43 is overexpressed in a number of human cancers. However, whether and how FBXO43 affects cell cycle progression and growth of cancer cells remain elusive. In this study, we provide first piece of evidence, showing a pivotal role of FBXO43 in cell cycle progression and growth of cancer cells. Specifically, FBXO43 acts as a positive cell cycle regulator with an oncogenic activity in variety types of human cancer, including non-small cell lung cancer, hepatocellular carcinoma and sarcoma...
April 9, 2024: Cancer Letters
https://read.qxmd.com/read/38604158/spin-resolved-counting-statistics-as-a-sensitive-probe-of-spin-correlation-in-transport-through-a-quantum-dot-spin-valve
#25
JOURNAL ARTICLE
Guanjian Hu, Jing Hu, Shikuan Wang, RuiQiang Li, Yiying Yan, Junyan Luo
We investigate the noise in spin transport through a single quantum dot (QD) tunnel coupled to ferromagnetic electrodes with noncollinear magnetizations. Based on a spin-resolved quantum master equation, auto- and cross-correlations of spin-resolved currents are analyzed to reveal the underlying spin transport dynamics and characteristics for various polarizations. We find the currents of majority and minority spins could be strongly autocorrelated despite uncorrelated charge trans fer. The interplay between tunnel coupling and the Coulomb interaction gives rise to an exchange magnetic field, leading to the precession of the accumulated spin in the QD...
April 11, 2024: Journal of Physics. Condensed Matter: An Institute of Physics Journal
https://read.qxmd.com/read/38603709/detecting-epinephrine-auto-injector-shortages-in-finland-2016-2022-log-data-analysis-of-online-information-seeking
#26
JOURNAL ARTICLE
Milla Mukka, Samuli Pesälä, Pekka Mustonen, Minna Kaila, Otto Helve
INTRODUCTION: Medicine shortages prevail as a worldwide problem causing life-threatening situations for adults and children. Epinephrine auto-injectors are used for serious allergic reactions called anaphylaxis, and alternative auto-injectors are not always available in pharmacies. Healthcare professionals in Finland use the dedicated internet source, Physician's Database (PD), when seeking medical information in practice, while Health Library (HL) provides health information for citizens (S1 Data)...
2024: PloS One
https://read.qxmd.com/read/38602935/how-the-covid-19-pandemic-hit-crime-in-barcelona-analysis-of-variation-in-crime-trends
#27
JOURNAL ARTICLE
Diego A Díaz-Faes, Ferran Vidal-Codina, Anna Segura, Raúl Aguilar, Noemí Pereda
OBJECTIVES: To compare the observed and forecasted crime trends in Barcelona, using crime statistics from January 2018 to March 2021. METHODS: We trained (seasonal) auto-regressive integrated moving average modelling (95% confidence intervals) using daily recorded crimes from January 2018 to February 2020. These models were then used to forecast crime data from March 2020 to March 2021 across four periods (lockdown, summer, fall and winter). Crime data were organized into two categories: property (burglary, theft) and violent crimes (robbery, assault, domestic violence and sexual offenses [rape, assault or abuse])...
May 2023: European Journal of Criminology
https://read.qxmd.com/read/38602638/the-dynamic-risk-spillover-effects-among-carbon-renewable-energy-and-electricity-markets-based-on-the-tvp-var-dy-model
#28
JOURNAL ARTICLE
Yimin Luo, Shuifeng Hong, Fengtao Guang
The linkages among carbon, renewable energy, and electricity markets are gradually strengthening. In order to prevent risk transmission among markets, this paper uses the TVP-VAR-DY (Time-Varying Parameter-Vector Auto Regression-Dynamic) model to analyze the dynamic risk spillover effects and network structure of risk transmission among carbon, renewable energy, and electricity markets. The empirical results show that there are significant asymmetric spillover effects among carbon, renewable energy, and electricity markets...
April 11, 2024: Environmental Science and Pollution Research International
https://read.qxmd.com/read/38602465/identification-and-biological-characteristics-of-enterococcus-casseliflavus-tn-47-isolated-from-monochamus-alternatus
#29
JOURNAL ARTICLE
Zi-Ran Peng, Jian-Gang Zhang, Jia-Bao Zhang, Xiao-Qi Lin, Wei Chen, Yong-Jun Yang, Zhen-Zhen Liu
With the widespread use of antibiotics, the incidence of antibiotic resistance in microorganisms has increased. Monochamus alternatus is a trunk borer of pine trees. This study aimed to investigate the in vitro antimicrobial and biological characteristics of Enterococcus casseliflavus TN-47 (PP411196), isolated from the gastrointestinal tract of M. alternatus in Jilin Province, PR China. Among 13 isolates obtained from the insects, five were preliminarily screened for antimicrobial activity. E. casseliflavus TN-47, which exhibited the strongest antimicrobial activity, was identified...
April 2024: International Journal of Systematic and Evolutionary Microbiology
https://read.qxmd.com/read/38601803/discovery-of-potential-epidermal-growth-factor-receptor-inhibitors-from-black-pepper-for-the-treatment-of-lung-cancer-an-in-silico-approach
#30
JOURNAL ARTICLE
Olusola Olalekan Elekofehinti, Ifeoluwa Rachael Adetoyi, Hannah Oluwaseun Popoola, Folasade Oluwatobiloba Ayodeji, Foluso Adeola Taiwo, Moses Orimoloye Akinjiyan, Omowunmi Funmilayo Koledoye, Opeyemi Iwaloye, Abayomi Emmanuel Adegboyega
UNLABELLED: A tyrosine kinase receptor known as epidermal growth factor receptor (EGFR) is one of the main tumour markers in many cancer types and also plays a crucial role in cell proliferation, differentiation, angiogenesis, and apoptosis, which is a result of the auto-phosphorylations (kinase activity enhancement) that trigger signals involved in different cellular processes. Due to the discovery that non-small cell lung cancer (NSCLC) is a cause of this kinase activity enhancement, so far, several inhibitors have been tested against EGFR, but the side effects of these inhibitors necessitate an urgent measure to come up with an inhibitor that will be more specific to the cancer cells and not affect self-cells...
2024: In Silico Pharmacology
https://read.qxmd.com/read/38601695/acute-exacerbation-prediction-of-copd-based-on-auto-metric-graph-neural-network-with-inspiratory-and-expiratory-chest-ct-images
#31
JOURNAL ARTICLE
Shicong Wang, Wei Li, Nanrong Zeng, Jiaxuan Xu, Yingjian Yang, Xingguang Deng, Ziran Chen, Wenxin Duan, Yang Liu, Yingwei Guo, Rongchang Chen, Yan Kang
Chronic obstructive pulmonary disease (COPD) is a widely prevalent disease with significant mortality and disability rates and has become the third leading cause of death globally. Patients with acute exacerbation of COPD (AECOPD) often substantially suffer deterioration and death. Therefore, COPD patients deserve special consideration regarding treatment in this fragile population for pre-clinical health management. Based on the above, this paper proposes an AECOPD prediction model based on the Auto-Metric Graph Neural Network (AMGNN) using inspiratory and expiratory chest low-dose CT images...
April 15, 2024: Heliyon
https://read.qxmd.com/read/38601119/comparison-of-obgyn-postgraduate-curricula-and-assessment-methods-between-canada-and-the-netherlands-an-auto-ethnographic-study
#32
JOURNAL ARTICLE
Emma Paternotte, Marja Dijksterhuis, Angelique Goverde, Hanna Ezzat, Fedde Scheele
INTRODUCTION: Although the Dutch and the Canadian postgraduate Obstetrics and Gynecology (OBGYN) medical education systems are similar in their foundations [programmatic assessment, competency based, involving CanMED roles and EPAs (entrustable professional activities)] and comparable in healthcare outcome, their program structures and assessment methods considerably differ. MATERIALS AND METHODS: We compared both countries' postgraduate educational blueprints and used an auto-ethnographic method to gain insight in the effects of training program structure and assessment methods on how trainees work...
2024: Frontiers in Medicine
https://read.qxmd.com/read/38600441/kegg-orthology-prediction-of-bacterial-proteins-using-natural-language-processing
#33
JOURNAL ARTICLE
Jing Chen, Haoyu Wu, Ning Wang
BACKGROUND: The advent of high-throughput technologies has led to an exponential increase in uncharacterized bacterial protein sequences, surpassing the capacity of manual curation. A large number of bacterial protein sequences remain unannotated by Kyoto Encyclopedia of Genes and Genomes (KEGG) orthology, making it necessary to use auto annotation tools. These tools are now indispensable in the biological research landscape, bridging the gap between the vastness of unannotated sequences and meaningful biological insights...
April 11, 2024: BMC Bioinformatics
https://read.qxmd.com/read/38599135/bayesian-hypernetwork-collaborates-with-time-difference-evolutional-network-for-temporal-knowledge-prediction
#34
JOURNAL ARTICLE
Pengpeng Shao, Yang Wen, Jianhua Tao
A Temporal Knowledge Graph (TKG) is a sequence of Knowledge Graphs (KGs) attached with time information, in which each KG contains the facts that co-occur at the same timestamp. Temporal knowledge prediction (TKP) aims to predict future events given observed historical KGs in TKGs, which is essential for many applications to provide intelligent analysis services. However, most existing TKP methods focus on entity and relation prediction tasks but ignore the importance of time prediction tasks. Furthermore, there is uncertainty in time prediction, and it is difficult for prediction models to model it completely...
February 1, 2024: Neural Networks: the Official Journal of the International Neural Network Society
https://read.qxmd.com/read/38599005/synthesis-radiosynthesis-and-biochemical-evaluation-of-fluorinated-analogues-of-sphingosine-1-phosphate-receptor-3-specific-antagonists-using-pet
#35
JOURNAL ARTICLE
Vysakh Puspha Prasad, Stefan Wagner, Petra Keul, Sven Hermann, Bodo Levkau, Michael Schäfers, Günter Haufe
Sphingosine-1-phosphate and its receptors (S1PRs) are involved in several diseases such as auto immunity, inflammation and cardiovascular disorders. The S1P analogue fingolimod (Gilenya®) is currently in use for the treatment of relapsing multiple sclerosis. S1PRs are also promising targets for clinical molecular imaging in vivo. The organ distribution of individual S1PRs can be potentially achieved by using S1PR subtype-specific (radiolabeled) chemical probes. Here, we report our efforts on synthesis and in vivo potency determination of new ligands for the S1P receptor 3 (S1P3 ) based on the S1P3 antagonist TY-52156 and in validation of a potential imaging tracer in vivo using Positron Emission Tomography (PET) after 18 F-labelling...
March 26, 2024: Bioorganic & Medicinal Chemistry
https://read.qxmd.com/read/38598259/a-noise-robust-image-reconstruction-using-slice-aware-cycle-interpolator-network-for-parallel-imaging-in-mri
#36
JOURNAL ARTICLE
Jeewon Kim, Wonil Lee, Beomgu Kang, Hyunseok Seo, HyunWook Park
BACKGROUND: Reducing Magnetic resonance imaging (MRI) scan time has been an important issue for clinical applications. In order to reduce MRI scan time, imaging acceleration was made possible by undersampling k-space data. This is achieved by leveraging additional spatial information from multiple, independent receiver coils, thereby reducing the number of sampled k-space lines. PURPOSE: The aim of this study is to develop a deep-learning method for parallel imaging with a reduced number of auto-calibration signals (ACS) lines in noisy environments...
April 10, 2024: Medical Physics
https://read.qxmd.com/read/38597994/antimicrobial-and-probiotic-potential-of-lactobacilli-associated-with-traditional-fermented-beverages
#37
JOURNAL ARTICLE
Surmani Huidrom, Pulok K Mukherjee, Sarangthem Indira Devi
Fermented foods have been recognized as a source of probiotic bacteria which can have a positive effect when administered to humans and animals. Discovering new probiotics in fermented food products poses a global economic and health importance. In this study, we investigated the antimicrobial and probiotic potential of lactobacilli isolated from fermented beverages produced traditionally by ethnic groups in Northeast India. Out of thirty Lactobacilli, fifteen exhibited strong antimicrobial activity against Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa, and Enterobacter aerogenes with significant anti-biofilm and anti-quorum sensing activity...
April 10, 2024: Current Microbiology
https://read.qxmd.com/read/38597923/a-calcium-dependent-protein-kinase-regulates-the-defense-response-in-citrus-sinensis
#38
JOURNAL ARTICLE
Jinghan Zhang, Lifan Sun, Yu Wang, Baiyang Li, Xiangguo Li, Ziqin Ye, Jie Zhang
Citrus Huanglongbing (HLB), which is caused by Candidatus Liberibacter asiaticus (CLas), is one of the most destructive citrus diseases worldwide, and defense-related Citrus sinensis gene resources remain largely unexplored. Calcium signaling plays an important role in diverse biological processes. In plants, a few calcium-dependent protein kinases (CDPKs/CPKs) have been shown to contribute to defense against pathogenic microbes. The genome of Citrus sinensis encodes dozens of CPKs. In this study, the role of CsCPKs in Citrus sinensis defense was investigated...
April 10, 2024: Molecular Plant-microbe Interactions: MPMI
https://read.qxmd.com/read/38597238/daratumumab-treatment-in-six-highly-sensitised-solid-organ-transplant-recipients-a-case-series-and-literature-review
#39
REVIEW
Richard Lemal, Lucie Blandin, Charlotte Uro-Coste, Carole Philipponnet, Etienne Geoffroy, Anne-Elisabeth Heng, Cyril Garrouste, Paul Rouzaire
We report data on six kidney or heart recipients who were administered daratumumab to treat or prevent antibody-mediated rejection (ABMR). To date, data are scarce concerning the use of daratumumab in solid organ transplantation and most reports show a decrease in donor-specific antigen (DSA) levels and an improvement in ABMR using a multiple myeloma daratumumab administration scheme, that is, with sequential systematic administration. Here, we report on the efficacy of daratumumab 1/ in reducing the histological signs of ABMR, 2/ in reducing the ability of DSA to bind to donor cells in vitro through negativation of flow cytometry crossmatching, 3/ in preferentially being directed towards antibodies sharing epitopes, suggesting that daratumumab may specifically target activated plasma cells, 4/ and when administered as a single dose...
April 2024: HLA
https://read.qxmd.com/read/38596688/differences-in-f-pocket-impact-on-hla-i-genetic-associations-with-autoimmune-diabetes
#40
JOURNAL ARTICLE
Xu Ren, A W Peshala Amarajeewa, M D Tharushika Jayasinghe, Malgorzata A Garstka
INTRODUCTION: Human leukocyte antigen (HLA) I molecules present antigenic peptides to activate CD8+ T cells. Type 1 Diabetes (T1D) is an auto-immune disease caused by aberrant activation of the CD8+ T cells that destroy insulin-producing pancreatic β cells. Some HLA I alleles were shown to increase the risk of T1D (T1D-predisposing alleles), while some reduce this risk (T1D-protective alleles). METHODS: Here, we compared the T1D-predisposing and T1D-protective allotypes concerning peptide binding, maturation, localization and surface expression and correlated it with their sequences and energetic profiles using experimental and computational methods...
2024: Frontiers in Immunology
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