keyword
https://read.qxmd.com/read/37047531/novel-transcriptomic-interactomes-of-noncoding-rnas-in-the-heart-under-altered-thyroid-hormonal-states
#21
JOURNAL ARTICLE
Viswanathan Rajagopalan, Sankalpa Chakraborty, Richard Lin
Noncoding RNAs are emerging as vital players in cardiovascular diseases. Thyroid hormones (THs) are crucial for cardiovascular survival; however, correction of systemic hypothyroidism (low serum THs) may not improve cardiac tissue-level hypothyroidism or cardiac function. Mechanistically, the understanding of noncoding transcriptomic interactions influencing TH-mediated cardiac effects is unclear. Adult C57BL/6J mixed-sex mice were randomized into Control, Hypothyroid (HypoTH), Hyperthyroid (HyperTH), and HypoTH-Triiodothyronine restoration groups...
March 31, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/37045929/identification-and-panoramic-analysis-of-drug-response-related-genes-in-triple-negative-breast-cancer-using-as-an-example-nvp-bez235
#22
JOURNAL ARTICLE
Jia Feng, Luchang Wang, Kaijiong Zhang, Sujiao Ni, Baolin Li, Jinbo Liu, Dongsheng Wang
Taking NVP-BEZ235 (BEZ235) as an example to screen drug response-related genes (DRRGs) and explore their potential value in triple-negative breast cancer (TNBC). Through high-throughput technique, multidimensional transcriptome expression data (mRNA, miRNA and lncRNA) of BEZ235-treated and -untreated MDA-MB-468 cell lines were obtained. Combined with transcriptome data of the MDA-MB-468 cells and TCGA-TNBC tissues, differential gene expression analysis and WGCNA were performed to identify DRRGs associated with tumor trait by simulating the drug response microenvironment (DRM) of BEZ235-treated patients...
April 12, 2023: Scientific Reports
https://read.qxmd.com/read/36997170/long-noncoding-rna-nonhsag045500-regulates-serotonin-transporter-to-ameliorate-depressive-like-behavior-via-the-camp-pka-creb-signaling-pathway-in-a-model-of-perinatal-depression
#23
JOURNAL ARTICLE
Xuelian Cui, Yongjuan Xu, Haiyan Zhu, Li Wang, Jun Zhou
OBJECTIVE: Perinatal depression (PND) is the most common complication of childbirth and negatively affects the mother. Long noncoding RNA (lncRNA) NONHSAG045500 inhibits the expression of 5-hydroxytryptamine (5-HT) transporter (i.e. serotonin transporter [SERT]) and produces an antidepressant effect. This study aimed to identify a link between the lncRNA NONHSAG045500 and the pathogenesis of PND. METHODS: Female C57BL/6 J mice were divided into normal control group (control group, n  = 15), chronic unpredictable stress (CUS) model group (PND group, n  = 15), lncRNA NONHSAG045500-overexpressed group (LNC group, sublingual intravenous injection of NONHSAG045500 overexpression cells for 7 days, n  = 15), and escitalopram treatment group (i...
December 2023: Journal of Maternal-fetal & Neonatal Medicine
https://read.qxmd.com/read/36982414/genome-wide-analysis-of-long-noncoding-rnas-in-porcine-intestine-during-weaning-stress
#24
JOURNAL ARTICLE
Shujie Liu, Xin Tao, Bo Deng, Yongming Li, Ziwei Xu
Long noncoding RNAs (lncRNAs) play crucial roles in various biological processes, and they are considered to be closely associated with the pathogenesis of intestinal diseases. However, the role and expression of lncRNAs in intestinal damage during weaning stress remain unknown. Herein, we investigated the expression profiles of jejunal tissue from weaning piglets at 4 and 7 d after weaning (groups W4 and W7, respectively) and from suckling piglets on the same days (groups S4 and S7, respectively). Genome-wide analysis of lncRNAs was also performed using RNA sequencing technology...
March 10, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/36942812/long-non-coding-rnas-and-small-nucleolar-rna-host-gene-6-contribute-to-the-depression-like-behavior-of-hypothyroid-mice-by-promoting-methylation-of-the-brain-derived-neuropathic-factor-promoter-that-is-mediated-by-dna-methyltransferase-1
#25
JOURNAL ARTICLE
H Yang, W Jia, D-P Zhang, Y-X Xu, F Wang, N Wang, D-F Zhu
Long non-coding RNAs (lncRNAs) and small nucleolar RNA host gene 6 (SNHG6) have attracted extensive attention due to their involvement in various pathological processes. However, the functional role of lncRNA SNHG6 in depression-like behavior induced by hypothyroidism is still largely unknown. Our study was designed to explore the biological role of lncRNA SNHG6 in depression-like behavior induced by hypothyroidism and the underlying mechanisms. First, the depression-like behavior of hypothyroid mice was investigated after lncRNA SNHG6 knockdown...
October 2022: Journal of Physiology and Pharmacology: An Official Journal of the Polish Physiological Society
https://read.qxmd.com/read/36761396/association-between-single-nucleotide-polymorphisms-within-lncrna-nonhsat102891-and-depression-susceptibility-in-a-chinese-population
#26
JOURNAL ARTICLE
Peng Liang, Yingjie Sun, Yue Li, Yundan Liang
BACKGROUND: Depression is among the most common psychiatric disorders, and is a leading cause of the global disease burden. Its pathophysiological mechanism is unclear, which limits the development of therapeutic strategies. Long non-coding RNA (lncRNA) single nucleotide polymorphisms (SNPS) may be related. In this study, we aimed to determine the effects of the rs2242385, rs155979, rs3762983, and rs3762984 polymorphisms in the lncRNA NONHSAT102891 on depression susceptibility in a Chinese population...
2023: Neuropsychiatric Disease and Treatment
https://read.qxmd.com/read/36717790/lncrna-ak089514-mir-125b-5p-traf6-axis-mediates-macrophage-polarization-in-allergic-asthma
#27
JOURNAL ARTICLE
Xiaolong Zhu, Ling He, Xueqin Li, Weiya Pei, Hui Yang, Min Zhong, Mengying Zhang, Kun Lv, Yingying Zhang
BACKGROUND: Micro RNA (miRNA) plays important roles in macrophage polarization. However, the manner in which miRNA regulate macrophage polarization in response to dermatophagoides farinae protein 1(Der f1)-induced asthma has not been defined. This study aims to explore the role of miRNAs in regulating macrophages in asthma. METHODS: The microRNAs which may regulate asthma were selectd by Microarrays. The function of miR-125b-5p in macrophage and Der f1-induced asthma were detected in vivo experiment...
January 30, 2023: BMC Pulmonary Medicine
https://read.qxmd.com/read/36628999/a-gene-expression-analysis-of-long-non-coding-rnas-nkila-and-pacer-as-well-as-their-target-genes-nf-%C3%AE%C2%BAb-and-cox-2-in-bipolar-disorder-patients
#28
JOURNAL ARTICLE
Reza Mola-Ali-Nejad, Saba Fakharianzadeh, Zahra Maloum, Mohammad Taheri, Zeinab Shirvani-Farsani
Bipolar disorder (BD) is a severe condition characterized by periods of mania and depression. Despite advances in the neurobiology of bipolar disorder, the exact etiology of the disease remains unclear. There is evidence that Inflammation is associated with bipolar disorder. COX-2 and NF-κB are two critical mediators in the inflammatory pathways. Long non-coding RNAs (lncRNAs) are a new class of non-coding RNAs that play a wide range of roles, especially in developing and maintaining normal brain functions...
January 11, 2023: Nucleosides, Nucleotides & Nucleic Acids
https://read.qxmd.com/read/36459549/long-noncoding-rna-gm2694-drives-depressive-like-behaviors-in-male-mice-by-interacting-with-grp78-to-disrupt-endoplasmic-reticulum-homeostasis
#29
JOURNAL ARTICLE
Hong-Sheng Chen, Ji Wang, Hou-Hong Li, Xiao Wang, Shao-Qi Zhang, Tan Deng, Yu-Ke Li, Ruo-Si Zou, Hua-Jie Wang, Rui Zhu, Wen-Long Xie, Gang Zhao, Fang Wang, Jian-Guo Chen
Long noncoding RNAs (lncRNAs) are involved in various biological processes and implicated in the regulation of neuronal activity, but the potential role of lncRNAs in depression remains largely unknown. Here, we identified that lncRNA Gm2694 was increased in the medial prefrontal cortex (mPFC) of male mice subjected to chronic social defeat stress (CSDS). The down-regulation of Gm2694 in the mPFC alleviated CSDS-induced depressive-like behaviors through enhanced excitatory synaptic transmission. Furthermore, we found that Gm2694 preferentially interacted with the carboxyl-terminal domain of 78-kilodalton glucose-regulated protein (GRP78), which abrogated GRP78 function and disrupted endoplasmic reticulum homeostasis, resulting in a reduction of the surface expression of AMPA receptors (AMPARs)...
December 2, 2022: Science Advances
https://read.qxmd.com/read/36449610/the-long-noncoding-rna-fedora-is-a-cell-type-and-sex-specific-regulator-of-depression
#30
JOURNAL ARTICLE
Orna Issler, Yentl Y van der Zee, Aarthi Ramakrishnan, Sunhui Xia, Alexander K Zinsmaier, Chunfeng Tan, Wei Li, Caleb J Browne, Deena M Walker, Marine Salery, Angélica Torres-Berrío, Rita Futamura, Julia E Duffy, Benoit Labonte, Matthew J Girgenti, Carol A Tamminga, Jeffrey L Dupree, Yan Dong, James W Murrough, Li Shen, Eric J Nestler
Women suffer from depression at twice the rate of men, but the underlying molecular mechanisms are poorly understood. Here, we identify marked baseline sex differences in the expression of long noncoding RNAs (lncRNAs), a class of regulatory transcripts, in human postmortem brain tissue that are profoundly lost in depression. One such human lncRNA, RP11-298D21.1 (which we termed FEDORA), is enriched in oligodendrocytes and neurons and up-regulated in the prefrontal cortex (PFC) of depressed females only. We found that virally expressing FEDORA selectively either in neurons or in oligodendrocytes of PFC promoted depression-like behavioral abnormalities in female mice only, changes associated with cell type-specific regulation of synaptic properties, myelin thickness, and gene expression...
December 2, 2022: Science Advances
https://read.qxmd.com/read/36328497/lncrna-gm16638-201-inhibits-the-14-3-3%C3%A6-pathway-in-the-murine-prefrontal-cortex-to-induce-depressive-behaviors
#31
JOURNAL ARTICLE
Ting Zhang, Wan Lun Wang, Tong Jia Liu, Shuang Lu, Yan Chao Bian, Rui Xiao, Chuan Ling Zhang
The dysregulation of certain long non-coding RNAs (lncRNAs) has been considered to be involved in neuropsychiatric disorders such as depression, implying the vital role of these transcripts. We have previously identified many differentially expressed lncRNAs in chronic unpredictable mild stress (CUMS) induced mice. Among them, lncRNA Gm16638-201 was highly expressed in the hippocampus (HIP) of CUMS, but the specific role and the underlying mechanisms remain unclear. Here, we reported that lncRNA Gm16638-201 was highly expressed in the prefrontal cortex (PFC) of CUMS induced depressive mice...
2022: Biological & Pharmaceutical Bulletin
https://read.qxmd.com/read/36276964/whole-transcriptome-sequencing-and-cerna-interaction-network-of-temporomandibular-joint-osteoarthritis
#32
JOURNAL ARTICLE
Fan Wu, Yanxin An, Libo Zhou, Yuqing Zhao, Lei Chen, Jing Wang, Gaoyi Wu
Purpose: The aim of this study was to conduct a comprehensive transcriptomic analysis to explore the potential biological functions of noncoding RNA (ncRNAs) in temporomandibular joint osteoarthritis (TMJOA). Methods: Whole transcriptome sequencing was performed to identify differentially expressed genes (DEGs) profiles between the TMJOA and normal groups. The functions and pathways of the DEGs were analyzed using Metascape, and a competitive endogenous RNA (ceRNA) network was constructed using Cytoscape software...
2022: Frontiers in Genetics
https://read.qxmd.com/read/36257574/lncrna-xr_351665-contributes-to-chronic-pain-induced-depression-by-upregulating-dnmt1-via-sponging-mir-152-3p
#33
JOURNAL ARTICLE
Xiaobao Ding, Yuwen Lin, Binbin Yan, Xiaowei Jiao, Qiang Liu, Huihui Miao, Yuqing Wu, Chenghua Zhou
Chronic pain is frequently comorbid with depression. However, the mechanisms underlying chronic pain-induced depression remain unclear. Here, we found that DNA methyltransferase 1 (DNMT1) was upregulated in the central amygdala (CeA) of spared nerve injury (SNI)-induced chronic pain-depression rats, and knockdown of DNMT1 could improve the depression-like behaviors in SNI rats. Additionally, a panel of differentially expressed lncRNAs, including 38 upregulated and 12 downregulated lncRNAs, were identified by microarray analysis...
October 15, 2022: Journal of Pain
https://read.qxmd.com/read/36103902/are-the-epigenetic-changes-predictive-of-therapeutic-efficacy-for-psychiatric-disorders-a-translational-approach-towards-novel-drug-targets
#34
REVIEW
Vincenzo Micale, Martina Di Bartolomeo, Serena Di Martino, Tibor Stark, Bernardo Dell'Osso, Filippo Drago, Claudio D'Addario
Although the etiopathogenesis of mental disorders is not fully understood, accumulating evidence support that clinical symptomatology cannot be assigned to a single gene mutation, but it involves several genetic factors. More specifically, a tight association between genes and environmental risk factors, which could be mediated by epigenetic mechanisms, may play a role in the development of mental disorders. Several data suggest that epigenetic modifications such as DNA methylation, post-translational histone modification and interference of microRNA (miRNA) or long non-coding RNA (lncRNA) may modify the severity of the disease and the outcome of the therapy...
September 11, 2022: Pharmacology & Therapeutics
https://read.qxmd.com/read/36041701/lncrna-pvt1-is-a-novel-mediator-promoting-the-angiogenesis-response-associated-with-collateral-artery-formation
#35
JOURNAL ARTICLE
You Li, Jing-Yi Xue, Shuang Chen, Chao Wang, Ping Sun, Shuai Fu, Yitong Li, Peng Zhao, Jiawei Tian, Guo-Qing Du
AIMS: Angiogenesis plays a key role in coronary collateral circulation (CCC), the compensatory formation of new blood vessels during chronic total coronary occlusion. This study aimed to determine whether plasmacytoma variant translocation 1 (PVT1), a long non-coding (lnc) RNA involved in tumor angiogenesis, plays a role in regulating angiogenesis during chronic coronary ischemia. MAIN METHODS: Patients with coronary artery disease, and ≥90% stenosis, were examined and divided into "Good" and "Poor" CCC groups based on Rentrop Cohen classification...
August 27, 2022: International Journal of Biochemistry & Cell Biology
https://read.qxmd.com/read/35959106/lncrna-84277-is-involved-in-chronic-pain-related-depressive-behaviors-through-mir-128-3p-sirt1-axis-in-central-amygdala
#36
JOURNAL ARTICLE
Xiaowei Jiao, Ruiyao Wang, Xiaobao Ding, Binbin Yan, Yuwen Lin, Qiang Liu, Yuqing Wu, Chenghua Zhou
Long-term chronic pain can lead to depression. However, the mechanism underlying chronic pain-related depression remains unclear. Sirtuin 1 (SIRT1) is a nicotinamide adenine dinucleotide (NAD+ )-dependent histone deacetylase (HDAC). Our previous studies have demonstrated that SIRT1 in the central nucleus of the amygdala (CeA) is involved in the development of chronic pain-related depression. In addition, increasing studies have indicated that long non-coding RNAs (lncRNAs) play a vital role in the pathogenesis of pain or depression...
2022: Frontiers in Molecular Neuroscience
https://read.qxmd.com/read/35957833/sp1-induced-upregulation-of-lncrna-linc00659-promotes-tumour-progression-in-gastric-cancer-by-regulating-mir-370-aqp3-axis
#37
JOURNAL ARTICLE
Yao Wang, Yuanyuan Guo, Tianchi Zhuang, Ting Xu, Minghui Ji
Growing evidence demonstrates that long noncoding RNAs (lncRNAs) play critical roles in various human tumors. LncRNA LINC00659 (LINC00659) is a newly identified lncRNA and its roles in tumors remain largely unclear. In this study, we elucidated the potential functions and molecular mechanisms of LINC00659 on the biological behaviors of gastric cancer (GC), and also explored its clinical significance. We firstly demonstrated that LINC00659 levels were distinctly up-regulated in both GC specimens and cells using bioinformatics analysis and RT-PCR...
2022: Frontiers in Endocrinology
https://read.qxmd.com/read/35800618/linc01140-regulates-osteosarcoma-proliferation-and-invasion-by-targeting-the-mir-139-5p-hoxa9-axis
#38
JOURNAL ARTICLE
Shufang Zhang, Rongchun Chen
Osteosarcoma is one of the commonest metastatic tumor in children and teenagers, and has a hopeless, prognosis. Long non-coding RNA (lncRNA) acts momentous roles as a regulator on the proliferation and migration of cancer. Here, we performed GEO database analysis and qPCR to identify differentially expressed lncRNAs in osteosarcoma cells. Knockdown of lncRNA LINC01140 was used to detect the effect of LINC01140 on the proliferation, invasion, and epithelial-mesenchymal transition (EMT) of osteosarcoma cells...
September 2022: Biochemistry and Biophysics Reports
https://read.qxmd.com/read/35758595/lncrna-loc105378097-inhibits-cardiac-mitophagy-in-natural-ageing-mice
#39
JOURNAL ARTICLE
Xin Liu, Xue Bai, Heng Liu, Yang Hong, Hao Cui, Lei Wang, Wanqing Xu, Limin Zhao, Xiaohan Li, Huimin Li, Xia Li, Hui Chen, Ziyu Meng, Han Lou, Henghui Xu, Yuan Lin, Zhimin Du, Philipp Kopylov, Baofeng Yang, Yong Zhang
BACKGROUND: The development of heart ageing is the main cause of chronic disability, disease and death in the elderly. Ample evidence has established a pivotal role for significantly reduced mitophagy in the ageing heart. However, the underlying mechanisms of mitophagy deficiency in ageing heart are little known. The present study aimed to explore the underlying mechanisms of lncRNA LOC105378097 (Senescence-Mitophagy Associated LncRNA, lncR-SMAL) actions on mitophagy in the setting of heart ageing...
June 2022: Clinical and Translational Medicine
https://read.qxmd.com/read/35682830/epigenetic-connection-of-the-calcitonin-gene-related-peptide-and-its-potential-in-migraine
#40
REVIEW
Michal Fila, Anna Sobczuk, Elzbieta Pawlowska, Janusz Blasiak
The calcitonin gene-related peptide (CGRP) is implicated in the pathogenesis of several pain-related syndromes, including migraine. Targeting CGRP and its receptor by their antagonists and antibodies was a breakthrough in migraine therapy, but the need to improve efficacy and limit the side effects of these drugs justify further studies on the regulation of CGRP in migraine. The expression of the CGRP encoding gene, CALCA , is modulated by epigenetic modifications, including the DNA methylation, histone modification, and effects of micro RNAs (miRNAs), circular RNAs, and long-coding RNAs (lncRNAs)...
May 30, 2022: International Journal of Molecular Sciences
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