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Aspergillus nidulans

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https://www.readbyqxmd.com/read/29029189/identification-of-a-mutarotase-gene-involved-in-d-galactose-utilization-in-aspergillus-nidulans
#1
László Kulcsár, Michel Flipphi, Ágota Jónás, Erzsébet Sándor, Erzsébet Fekete, Levente Karaffa
Aldose 1-epimerases or mutarotases (EC 5.1.3.3) are catalyzing the interconversion of α- and β-anomers of hemiacetals of aldose sugars such as D-glucose and D-galactose, and are presumed to play an auxiliary role in carbohydrate metabolism as mutarotation occurs spontaneously in watery solutions. The first step in the Leloir pathway of D-galactose breakdown is preceded by accelerated conversion of β-D-galactopyranose into the α-anomer, the substrate of the anomer-specific D-galactose 1-kinase. Here, we identified two putative aldose-1-epimerase genes (galmA and galmB) in the model organism Aspergillus nidulans, and characterized them upon generation of single- and double deletion mutant strains, as well as overexpressing mutants carrying multiple copies of either...
September 25, 2017: FEMS Microbiology Letters
https://www.readbyqxmd.com/read/28979242/a-comparison-of-microsatellites-in-phytopathogenic-aspergillus-species-in-order-to-develop-markers-for-the-assessment-of-genetic-diversity-among-its-isolates
#2
Sahil Mahfooz, Satyendra P Singh, Nishtha Mishra, Aradhana Mishra
The occurrence of Microsatellites (SSRs) has been witnessed in most of the fungal genomes however its abundance varies across species. In the present study, we analyzed the frequency of SSRs in the whole genome and transcripts of two phyto-pathogenic (Aspergillus niger and Aspergillus terreus) and compared them with two non-pathogenic (Aspergillus nidulans and Aspergillus oryzae) Aspergillus. Higher relative abundance and relative density of SSRs were observed in the whole genome and transcript sequences of the pathogenic Aspergillus when compared to the non-pathogenic...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28978674/substrate-specificity-of-the-fure-transporter-is-determined-by-cytoplasmic-terminal-domain-interactions
#3
Georgia F Papadaki, Sotiris Amillis, George Diallinas
FurE, a member of the NCS1 transporter family in Aspergillus nidulans, is specific for allantoin, uric acid, uracil and related analogues. Herein, we show that C- or N-terminally truncated FurE transporters (FurE-ΔC or FurE-ΔΝ) present increased protein stability, but also inability for uric acid transport. To better understand the role of cytoplasmic terminal regions, we characterized genetic suppressors that restore FurE-ΔC-mediated uric acid transport. Suppressors map in the periphery of the substrate-binding site (Thr133 in TMS3 and Val343 in TMS8), an outward-facing gate (Ser296 in TMS7, Ile371 in TMS9, Tyr392 and Leu394 in TMS10) or in flexible loops (Asp26 in LN, Gly222 in L5, Asn308 in L7)...
October 4, 2017: Genetics
https://www.readbyqxmd.com/read/28950493/probing-the-effect-of-tip-pressure-on-fungal-growth-application-to-aspergillus-nidulans
#4
Blanca González-Bermúdez, Qingxuan Li, Gustavo V Guinea, Miguel A Peñalva, Gustavo R Plaza
The study of fungal cells is of great interest due to their importance as pathogens and as fermenting fungi and for their appropriateness as model organisms. The differential pressure between the hyphal cytoplasm and the bordering medium is essential for the growth process, because the pressure is correlated with the growth rate. Notably, during the invasion of tissues, the external pressure at the tip of the hypha may be different from the pressure in the surrounding medium. We report the use of a method, based on the micropipette-aspiration technique, to study the influence of this external pressure at the hyphal tip...
August 2017: Physical Review. E
https://www.readbyqxmd.com/read/28947555/biochemical-and-structural-bioinformatics-studies-of-fungal-cuta-nucleotidyltransferases-explain-their-unusual-specificity-towards-ctp-and-increased-tendency-for-cytidine-incorporation-at-the-3-terminal-positions-of-synthesized-tails
#5
Kamil Kobylecki, Krzysztof Kuchta, Andrzej Dziembowski, Krzysztof Ginalski, Rafal Tomecki
Non-canonical RNA nucleotidyltransferases (NTases), including poly(A), poly(U) polymerases (PAPs/PUPs) and C/U-adding enzymes, modify 3'-ends of different transcripts affecting their functionality and stability. They contain PAP/OAS1 substrate-binding domain (SBD) with inserted NTase domain. Aspergillus nidulans CutA (AnCutA), synthesizes C/U-rich 3'-terminal extensions in vivo Here, using high-throughput sequencing of the 3'-RACE products for tails generated by CutA proteins in vitro in the presence of all four NTPs, we show that even upon physiological ATP excess synthesized tails indeed contain an unprecedented number of cytidines interrupted by uridines and stretches of adenosines, and that majority end with two cytidines...
September 25, 2017: RNA
https://www.readbyqxmd.com/read/28940012/proteomic-analysis-of-the-soil-filamentous-fungus-aspergillus-nidulans-exposed-to-a-roundup-formulation-at-a-dose-causing-no-macroscopic-effect-a-functional-study
#6
Florence Poirier, Céline Boursier, Robin Mesnage, Nathalie Oestreicher, Valérie Nicolas, Christian Vélot
Roundup® is a glyphosate-based herbicide (GBH) used worldwide both in agriculture and private gardens. Thus, it constitutes a substantial source of environmental contaminations, especially for water and soil, and may impact a number of non-target organisms essential for ecosystem balance. The soil filamentous fungus Aspergillus nidulans has been shown to be highly affected by a commercial formulation of Roundup® (R450), containing 450 g/L of glyphosate (GLY), at doses far below recommended agricultural application rate...
September 23, 2017: Environmental Science and Pollution Research International
https://www.readbyqxmd.com/read/28904958/transcriptomic-analysis-reveals-genes-mediating-salt-tolerance-through-calcineurin-ccha-independent-signaling-in-aspergillus-nidulans
#7
Sha Wang, Hongchang Zhou, Jun Wu, Jiangyu Han, Shasha Li, Shengwen Shao
Adaptation to changes in the environment is crucial for the viability of all organisms. Although the importance of calcineurin in the stress response has been highlighted in filamentous fungi, little is known about the involvement of ion-responsive genes and pathways in conferring salt tolerance without calcium signaling. In this study, high-throughput RNA-seq was used to investigate salt stress-induced genes in the parent, ΔcnaB, and ΔcnaBΔcchA strains of Aspergillus nidulans, which differ greatly in salt adaption...
2017: BioMed Research International
https://www.readbyqxmd.com/read/28890404/structural-and-functional-characterization-of-a-highly-secreted-%C3%AE-l-arabinofuranosidase-gh62-from-aspergillus-nidulans-grown-on-sugarcane-bagasse
#8
Fabiano Jares Contesini, Marcelo Vizoná Liberato, Marcelo Ventura Rubio, Felipe Calzado, Mariane Paludetti Zubieta, Diego Mauricio Riaño-Pachón, Fabio Marcio Squina, Fabricio Bracht, Munir S Skaf, André Ricardo Damasio
Carbohydrate-Active Enzymes are key enzymes for biomass-to-bioproducts conversion. α-l-Arabinofuranosidases that belong to the Glycoside Hydrolase family 62 (GH62) have important applications in biofuel production from plant biomass by hydrolyzing arabinoxylans, found in both the primary and secondary cell walls of plants. In this work, we identified a GH62 α-l-arabinofuranosidase (AnAbf62Awt) that was highly secreted when Aspergillus nidulans was cultivated on sugarcane bagasse. The gene AN7908 was cloned and transformed in A...
September 8, 2017: Biochimica et Biophysica Acta
https://www.readbyqxmd.com/read/28889911/fpd-a-comprehensive-phosphorylation-database-in-fungi
#9
Youhuang Bai, Bin Chen, Mingzhu Li, Yincong Zhou, Silin Ren, Qin Xu, Ming Chen, Shihua Wang
Protein phosphorylation, one of the most classic post-translational modification, plays a critical role in diverse cellular processes including cell cycle, growth, and signal transduction pathways. However, the available information about phosphorylation in fungi is limited. Here, we provided a Fungi Phosphorylation Database (FPD) that comprises high-confidence in vivo phosphosites identified by MS-based proteomics in various fungal species. This comprehensive phosphorylation database contains 62 272 non-redundant phosphorylation sites in 11 222 proteins across eight organisms, including Aspergillus flavus, Aspergillus nidulans, Fusarium graminearum, Magnaporthe oryzae, Neurospora crassa, Saccharomyces cerevisiae, Schizosaccharomyces pombe, and Cryptococcus neoformans...
October 2017: Fungal Biology
https://www.readbyqxmd.com/read/28882432/analysis-of-ambient-ph-stress-response-mediated-by-iron-and-copper-intake-in-schizosaccharomyces-pombe
#10
Yujiro Higuchi, Hikari Mori, Takeo Kubota, Kaoru Takegawa
The molecular mechanism of tolerance to alkaline pH is well studied in model fungi Aspergillus nidulans and Saccharomyces cerevisiae. However, how fission yeast Schizosaccharomyces pombe survives under alkaline stress remains largely unknown, as the genes involved in the alkaline stress response pathways of A. nidulans and S. cerevisiae were not found in the genome of this organism. Since uptake of iron and copper into cells is important for alkaline tolerance in S. cerevisiae, here we examined whether iron and copper uptake processes were involved in conferring tolerance to alkaline stress in S...
September 4, 2017: Journal of Bioscience and Bioengineering
https://www.readbyqxmd.com/read/28876030/-overexpression-and-characterization-of-endo-cellulase-a10-from-aspergillus-nidulans-in-pichia-pastoris
#11
Jianjun Li, Xiaolian Li, Ziqiang Wang, Jianjun Li
Endo-cellulases are important to efficiently hydrolyze cellulose, and widely used in biotechnology. In this study, we overexpressed and characterized an endo-cellulase from Aspergillus nidulans. This endo-cellulase was successfully overexpressed in flasks and fermentor, and its concentration in fermentor reached 0.89 mg/mL. The optimal pH and temperature of the were 4.0 and 80 ℃ respectively, and it was very stable between pH 2.0 and 12.0. It was thermally stable below 60 ℃, whereas it was inactivated very quickly above 70 ℃...
May 25, 2017: Sheng Wu Gong Cheng Xue Bao, Chinese Journal of Biotechnology
https://www.readbyqxmd.com/read/28874473/revitalization-of-a-forward-genetic-screen-identifies-three-new-regulators-of-fungal-secondary-metabolism-in-the-genus-aspergillus
#12
Brandon T Pfannenstiel, Xixi Zhao, Jennifer Wortman, Philipp Wiemann, Kurt Throckmorton, Joseph E Spraker, Alexandra A Soukup, Xingyu Luo, Daniel L Lindner, Fang Yun Lim, Benjamin P Knox, Brian Haas, Gregory J Fischer, Tsokyi Choera, Robert A E Butchko, Jin-Woo Bok, Katharyn J Affeldt, Nancy P Keller, Jonathan M Palmer
The study of aflatoxin in Aspergillus spp. has garnered the attention of many researchers due to aflatoxin's carcinogenic properties and frequency as a food and feed contaminant. Significant progress has been made by utilizing the model organism Aspergillus nidulans to characterize the regulation of sterigmatocystin (ST), the penultimate precursor of aflatoxin. A previous forward genetic screen identified 23 A. nidulans mutants involved in regulating ST production. Six mutants were characterized from this screen using classical mapping (five mutations in mcsA) and complementation with a cosmid library (one mutation in laeA)...
September 5, 2017: MBio
https://www.readbyqxmd.com/read/28857357/aspergillus-nidulans-baph-is-a-rab11-effector-that-connects-membranes-in-the-spitzenk%C3%A3-rper-with-basal-autophagy
#13
Mario Pinar, Miguel A Peñalva
Using affinity chromatography we identified the Aspergillus nidulans F-BAR-and-PH domain-containing protein BapH as a RabE(RAB11) effector. BapH localizes to the Spitzenkörper (SPK) in an F-actin- and Sec7-dependent manner, becoming cytosolic after inactivation of Trs120 in TRAPPII, the oligomeric GEF for RabE(RAB11) . Therefore RabE(RAB11) contributes to the recruitment of BapH to secretory vesicles in vivo. BapH has a close homologue, SlmA, which is related to yeast Slm1p/Slm2p, localizes to eisosomes and does not bind RabE(RAB11) ...
August 30, 2017: Molecular Microbiology
https://www.readbyqxmd.com/read/28851634/molecular-cloning-structural-modeling-and-production-of-recombinant-aspergillus-terreusl-asparaginase-in-escherichia-coli
#14
Hesham Saeed, Hadeer Ali, Hadeer Soudan, Amira Embaby, Amany El-Sharkawy, Aida Farag, Ahmed Hussein, Farid Ataya
l-Asparaginase (EC 3.5.1.1) is an important medical enzyme that catalysis the hydrolysis of l-asparagine to aspartic acid and ammonium. For over four decades l. asparaginase utic agent for the treatment of a variety of lymphoproliferative disorders and lymphoma such as acute lymphoblastic leukemia. In the present study A. terreus full length l. asparaginase gene, 1179bp was optimized for expression in Escherichia coli BL21 (DE3) pLysS. The full length A. terreusl. asparaginase gene encoding a protein of 376 amino acids with estimated molecular weight of 42...
August 26, 2017: International Journal of Biological Macromolecules
https://www.readbyqxmd.com/read/28770220/transcriptome-based-modeling-reveals-that-oxidative-stress-induces-modulation-of-the-atfa-dependent-signaling-networks-in-aspergillus-nidulans
#15
Erzsébet Orosz, Károly Antal, Zoltán Gazdag, Zsuzsa Szabó, Kap-Hoon Han, Jae-Hyuk Yu, István Pócsi, Tamás Emri
To better understand the molecular functions of the master stress-response regulator AtfA in Aspergillus nidulans, transcriptomic analyses of the atfA null mutant and the appropriate control strains exposed to menadione sodium bisulfite- (MSB-), t-butylhydroperoxide- and diamide-induced oxidative stresses were performed. Several elements of oxidative stress response were differentially expressed. Many of them, including the downregulation of the mitotic cell cycle, as the MSB stress-specific upregulation of FeS cluster assembly and the MSB stress-specific downregulation of nitrate reduction, tricarboxylic acid cycle, and ER to Golgi vesicle-mediated transport, showed AtfA dependence...
2017: International Journal of Genomics
https://www.readbyqxmd.com/read/28759016/molecular-basis-for-the-unusual-ring-reconstruction-in-fungal-meroterpenoid-biogenesis
#16
Takahiro Mori, Taiki Iwabuchi, Shotaro Hoshino, Hang Wang, Yudai Matsuda, Ikuro Abe
Trt14 from Aspergillus terreus is involved in unusual skeletal reconstruction during the biosynthesis of the fungal meroterpenoid terretonin. Detailed in vitro characterization revealed that this novel multifunctional enzyme catalyzes not only the D-ring expansion via intramolecular methoxy rearrangement, but also the hydrolysis of the expanded D-ring. The X-ray crystal structures of Trt14, in complex with substrate or product, and two Trt14 homologs, AusH and PrhC from Aspergillus nidulans and Penicillium brasilianum, respectively, indicated similar overall structures to those of the NTF2-like superfamily of enzymes, despite lacking sequence and functional similarities...
October 2017: Nature Chemical Biology
https://www.readbyqxmd.com/read/28753996/boron-tolerance-in-aspergillus-nidulans-is-sustained-by-the-slta-pathway-through-the-slc-family-transporters-sbta-and-sbtb
#17
María Villarino, Oier Etxebeste, Gorka Mendizabal, Aitor Garzia, Unai Ugalde, Eduardo A Espeso
Microbial cells interact with the environment by adapting to external changes. Signal transduction pathways participate in both sensing and responding in the form of modification of gene expression patterns, enabling cell survival. The filamentous fungal-specific SltA pathway regulates tolerance to alkalinity, elevated cation concentrations and, as shown in this work, also stress conditions induced by borates. Growth of sltA(-) mutants is inhibited by increasing millimolar concentrations of boric acid or borax (sodium tetraborate)...
July 21, 2017: Genes
https://www.readbyqxmd.com/read/28752814/a-matter-of-scale-and-dimensions-chromatin-of-chromosome-landmarks-in-the-fungi
#18
Allyson A Erlendson, Steven Friedman, Michael Freitag
Chromatin and chromosomes of fungi are highly diverse and dynamic, even within species. Much of what we know about histone modification enzymes, RNA interference, DNA methylation, and cell cycle control was first addressed in Saccharomyces cerevisiae, Schizosaccharomyces pombe, Aspergillus nidulans, and Neurospora crassa. Here, we examine the three landmark regions that are required for maintenance of stable chromosomes and their faithful inheritance, namely, origins of DNA replication, telomeres and centromeres...
July 2017: Microbiology Spectrum
https://www.readbyqxmd.com/read/28747316/mitotic-nuclear-pore-complex-segregation-involves-nup2-in-aspergillus-nidulans
#19
Subbulakshmi Suresh, Sarine Markossian, Aysha H Osmani, Stephen A Osmani
Transport through nuclear pore complexes (NPCs) during interphase is facilitated by the nucleoporin Nup2 via its importin α- and Ran-binding domains. However, Aspergillus nidulans and vertebrate Nup2 also locate to chromatin during mitosis, suggestive of mitotic functions. In this study, we report that Nup2 is required for mitotic NPC inheritance in A. nidulans Interestingly, the role of Nup2 during mitotic NPC segregation is independent of its importin α- and Ran-binding domains but relies on a central targeting domain that is necessary for localization and viability...
September 4, 2017: Journal of Cell Biology
https://www.readbyqxmd.com/read/28746736/defensive-repertoire-of-drosophila-larvae-in-response-to-toxic-fungi
#20
Monika Trienens, Ken Kraaijeveld, Bregje Wertheim
Chemical warfare including insecticidal secondary metabolites is a well-known strategy for environmental microbes to monopolize a food source. Insects in turn have evolved behavioural and physiological defences to eradicate or neutralize the harmful microorganisms. We studied the defensive repertoire of insects in this interference competition by combining behavioural and developmental assays with whole-transcriptome time-series analysis. Confrontation with the toxic filamentous fungus Aspergillus nidulans severely reduced the survival of Drosophila melanogaster larvae...
July 26, 2017: Molecular Ecology
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