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https://www.readbyqxmd.com/read/29776001/evidence-for-formation-of-a-radical-mediated-flavin-n5-covalent-intermediate
#1
Yumin Dai, Hannah R Valentino, Pablo Sobrado
The redox-neutral reaction catalyzed by 2-haloacrylate hydratase (2-HAH) leads to the conversion of 2-chloroacrylate to pyruvate. Previous mechanistic studies demonstrated formation of a flavin-iminium ion as an important intermediate in the 2-HAH catalytic cycle. Time-resolved flavin absorbance studies were performed in this study and the data showed that the enzyme is capable of stabilizing both anionic and neutral flavin semiquinone species. The presence of a radical scavenger decreases the activity in a concentration-dependent manner...
May 18, 2018: Chembiochem: a European Journal of Chemical Biology
https://www.readbyqxmd.com/read/29775934/arsenic-speciation-dynamics-in-paddy-rice-soil-water-environment-sources-physico-chemical-and-biological-factors-a-review
#2
REVIEW
Prasanna Kumarathilaka, Saman Seneweera, Andrew Meharg, Jochen Bundschuh
Rice is the main staple carbohydrate source for billions of people worldwide. Natural geogenic and anthropogenic sources has led to high arsenic (As) concentrations in rice grains. This is because As is highly bioavailable to rice roots under conditions in which rice is cultivated. A multifaceted and interdisciplinary understanding, both of short-term and long-term effects, are required to identify spatial and temporal changes in As contamination levels in paddy soil-water systems. During flooding, soil pore waters are elevated in inorganic As compared to dryland cultivation systems, as anaerobism results in poorly mobile As(V), being reduced to highly mobile As(III)...
April 21, 2018: Water Research
https://www.readbyqxmd.com/read/29775864/exogenous-hydrogen-peroxide-inhibits-primary-root-gravitropism-by-regulating-auxin-distribution-during-arabidopsis-seed-germination
#3
Lina Zhou, Hongzhou Hou, Tao Yang, Yuke Lian, Yan Sun, Zhiyuan Bian, Chongying Wang
Hydrogen peroxide (H2 O2 ) is the key factor in many physiological and metabolic processes in plants. During seed germination, exogenous H2 O2 application influences gravitropism and induces curvature of the primary root in grass pea and pea seedlings. However, it remains unclear whether and how this happens in the model plant Arabidopsis thaliana. In the present study, the effect of exogenous H2 O2 on the gravitropic response of primary roots during Arabidopsis seed germination was studied using histology and molecular biology approaches...
May 15, 2018: Plant Physiology and Biochemistry: PPB
https://www.readbyqxmd.com/read/29775854/a-wavelength-modulated-localized-surface-plasmon-resonance-lspr-optical-fiber-sensor-for-sensitive-detection-of-mercury-ii-ion-by-gold-nanoparticles-dna-conjugates
#4
Shuo Jia, Chao Bian, Jizhou Sun, Jianhua Tong, Shanhong Xia
The study presented herein investigated an easy preparation, high performance, wavelength-modulated LSPR optical fiber chemosensor coated by gold nanospheres(AuNS) for Hg2+ detection based on thymine-Hg2+ -thymine base pair mismatches and the coupled plasmonic resonance effect.Utilizing electrostatic self-assembly method, the high density and dispersivity monolayer AuNS coated LSPR fiber sensor had the near field refractive index sensitivity up to 2016 nm/RIU. The single-strand probe DNA served as a binding element for free AuNS labelled-target DNA conjugates was attached to the monolayer AuNS by Au-S bond...
May 8, 2018: Biosensors & Bioelectronics
https://www.readbyqxmd.com/read/29775813/hyaluronate-lactoferrin-layer-by-layer-coated-lipid-nanocarriers-for-targeted-co-delivery-of-rapamycin-and-berberine-to-lung-carcinoma
#5
Dalia M Kabary, Maged W Helmy, Kadria A Elkhodairy, Jia-You Fang, Ahmed O Elzoghby
The self-tumor targeting polymers, lactoferrin (LF) and hyaluronic acid (HA) were utilized to develop layer-by-layer (LbL) lipid nanoparticles (NPs) for dual delivery of berberine (BER) and rapamycin (RAP) to lung cancer. To control its release from the NPs, BER was hydrophobically ion paired with SLS prior to incorporation into NPs. Spherical HA/LF-LbL-RAP-BER/SLS-NPs 250.5 nm in diameter, with a surface charge of -18.5 mV were successfully elaborated. The NPs exhibited sequential release pattern with faster release of BER followed by controlled release of RAP which enables sensitization of lung tumor cells to the anti-cancer action of RAP...
May 15, 2018: Colloids and Surfaces. B, Biointerfaces
https://www.readbyqxmd.com/read/29775742/ryanodine-receptor-ca-2-release-channel-post-translational-modification-central-player-in-cardiac-and-skeletal-muscle-disease
#6
Amanda Denniss, Angela F Dulhunty, Nicole A Beard
Calcium release from internal stores is a quintessential event in excitation-contraction coupling in cardiac and skeletal muscle. The ryanodine receptor Ca2+ release channel is embedded in the internal sarcoplasmic reticulum Ca2+ store, which releases Ca2+ into the cytoplasm, enabling contraction. Ryanodine receptors form the hub of a macromolecular complex extending from the extracellular space to the sarcoplasmic reticulum lumen. Ryanodine receptor activity is influenced by the integrated effects of associated co-proteins, ions, and post-translational phosphor and redox modifications...
May 15, 2018: International Journal of Biochemistry & Cell Biology
https://www.readbyqxmd.com/read/29775612/crystal-structure-of-wa352-provides-insight-into-cytoplasmic-male-sterility-in-rice
#7
Xiang Wang, Zeyuan Guan, Zhou Gong, Junjie Yan, Guangsheng Yang, Yao-Guang Liu, Ping Yin
Plant cytoplasmic male sterility (CMS) is an important phenomenon and is widely utilized in hybrid crop breeding. The Wild Abortive CMS (CMS-WA), a well-known CMS type, has been successfully applied in the commercial production of hybrid rice seeds for more than 40 years. The CMS-WA causal gene WA352 encodes a novel transmenbrane protein and the interacts with the mitochondrial copper chaperone COX11, triggering reactive oxygen species production and resulting in male sterility in CMS-WA lines. However, the structure of WA352 is currently unknown, and the structural mechanism whereby WA352 perturbs COX11 function to cause CMS remains largely unknown...
May 15, 2018: Biochemical and Biophysical Research Communications
https://www.readbyqxmd.com/read/29775494/osa-mir164a-targets-osnac60-and-negatively-regulates-rice-immunity-against-the-blast-fungus-magnaporthe-oryzae
#8
Zhaoyun Wang, Yeqiang Xia, Siyuan Lin, Yanru Wang, Baohuan Guo, Xiaoning Song, Shaochen Ding, Liyu Zheng, Ruiying Feng, Shulin Chen, Yalin Bao, Cong Sheng, Xin Zhang, Jianguo Wu, Dongdong Niu, Hailing Jin, Hongwei Zhao
Exploring the regulatory mechanism played by endogenous rice miRNAs in defense responses against the blast disease is of great significance in both resistant variety breeding and disease control management. We identified rice defense-related miRNAs by comparing rice miRNA expression patterns before and after Magnaporthe oryzae strain Guy11 infection. We discovered that osa-miR164a expression reduced upon Guy11 infection at both early and late stages, which was perfectly associated with the induced expression of its target gene, OsNAC60...
May 18, 2018: Plant Journal: for Cell and Molecular Biology
https://www.readbyqxmd.com/read/29775473/na-k-atpase-signaling-mediates-mir-29b-3p-regulation-and-cardiac-fibrosis-formation-in-mice-with-chronic-kidney-disease
#9
Christopher A Drummond, Xiaoming Fan, Steven T Haller, David J Kennedy, Jiang Liu, Jiang Tian
The Na/K-ATPase is an important membrane ion transporter and a signaling receptor that is essential for maintaining normal cell function. The current study examined the role of Na/K-ATPase signaling in regulating miR-29b-3p, an anti-fibrotic microRNA, in a mouse chronic kidney disease (CKD) model (5/6th partial nephrectomy or PNx). The results showed that CKD induced significant reduction of miR-29b-3p expression in the heart tissue by activation of Src and NFκB signaling in these animals. To demonstrate the role of Na/K-ATPase signaling, we also performed the PNx surgery on Na/K-ATPase α1 heterozygous (α1+/-) mice, which expresses ~40% less Na/K-ATPase α1 compared to their wild type littermates (WT) and exhibits deficiency in Na/K-ATPase signaling...
2018: PloS One
https://www.readbyqxmd.com/read/29775457/potassium-and-sodium-microdomains-in-thin-astroglial-processes-a-computational-model-study
#10
Kevin Breslin, John Joseph Wade, KongFatt Wong-Lin, Jim Harkin, Bronac Flanagan, Harm Van Zalinge, Steve Hall, Matthew Walker, Alexei Verkhratsky, Liam McDaid
A biophysical model that captures molecular homeostatic control of ions at the perisynaptic cradle (PsC) is of fundamental importance for understanding the interplay between astroglial and neuronal compartments. In this paper, we develop a multi-compartmental mathematical model which proposes a novel mechanism whereby the flow of cations in thin processes is restricted due to negatively charged membrane lipids which result in the formation of deep potential wells near the dipole heads. These wells restrict the flow of cations to "hopping" between adjacent wells as they transverse the process, and this surface retention of cations will be shown to give rise to the formation of potassium (K+) and sodium (Na+) microdomains at the PsC...
May 18, 2018: PLoS Computational Biology
https://www.readbyqxmd.com/read/29775439/facile-synthesis-of-sb2s3-mos2-heterostructure-as-anode-material-for-sodium-ion-batteries
#11
Zhendong Zhang, Jiachang Zhao, Meilan Xu, Hongxia Wang, Yanmei Gong, Jingli Xu
A novel Sb2S3/MoS2 heterostructure in which Sb2S3 nanorods are coated with MoS2 nanosheets to form core-shell structure has been fabricated via a facile two-step hydrothermal process. The Sb2S3/MoS2 heterostructure utilized as anode of sodium-ion batteries (SIBs) shows higher capacity, superior rate capability and better cycling performance compared with individual Sb2S3 nanorods and MoS2 nanosheets. Specifically, the Sb2S3/MoS2 electrode shows an initial reversible capacity of 701 mAh g-1 at the current density of 100 mA g-1, which is remained 80...
May 18, 2018: Nanotechnology
https://www.readbyqxmd.com/read/29775371/langevin-dynamics-with-spatial-correlations-as-a-model-for-electron-phonon-coupling
#12
A Tamm, M Caro, A Caro, G Samolyuk, M Klintenberg, A A Correa
Stochastic Langevin dynamics has been traditionally used as a tool to describe nonequilibrium processes. When utilized in systems with collective modes, traditional Langevin dynamics relaxes all modes indiscriminately, regardless of their wavelength. We propose a generalization of Langevin dynamics that can capture a differential coupling between collective modes and the bath, by introducing spatial correlations in the random forces. This allows modeling the electronic subsystem in a metal as a generalized Langevin bath endowed with a concept of locality, greatly improving the capabilities of the two-temperature model...
May 4, 2018: Physical Review Letters
https://www.readbyqxmd.com/read/29775363/charge-transfer-processes-in-warm-dense-matter-selective-spectral-filtering-for-laser-accelerated-ion-beams
#13
J Braenzel, M D Barriga-Carrasco, R Morales, M Schnürer
We investigate, both experimentally and theoretically, how the spectral distribution of laser accelerated carbon ions can be filtered by charge exchange processes in a double foil target setup. Carbon ions at multiple charge states with an initially wide kinetic energy spectrum, from 0.1 to 18 MeV, were detected with a remarkably narrow spectral bandwidth after they had passed through an ultrathin and partially ionized foil. With our theoretical calculations, we demonstrate that this process is a consequence of the evolution of the carbon ion charge states in the second foil...
May 4, 2018: Physical Review Letters
https://www.readbyqxmd.com/read/29775358/sustained-state-independent-quantum-contextual-correlations-from-a-single-ion
#14
F M Leupold, M Malinowski, C Zhang, V Negnevitsky, A Cabello, J Alonso, J P Home
We use a single trapped-ion qutrit to demonstrate the quantum-state-independent violation of noncontextuality inequalities using a sequence of randomly chosen quantum nondemolition projective measurements. We concatenate 53×10^{6} sequential measurements of 13 observables, and unambiguously violate an optimal noncontextual bound. We use the same data set to characterize imperfections including signaling and repeatability of the measurements. The experimental sequence was generated in real time with a quantum random number generator integrated into our control system to select the subsequent observable with a latency below 50  μs, which can be used to constrain contextual hidden-variable models that might describe our results...
May 4, 2018: Physical Review Letters
https://www.readbyqxmd.com/read/29775339/dissipation-induced-anomalous-multicritical-phenomena
#15
M Soriente, T Donner, R Chitra, O Zilberberg
We explore the influence of dissipation on a paradigmatic driven-dissipative model where a collection of two level atoms interact with both quadratures of a quantum cavity mode. The closed system exhibits multiple phase transitions involving discrete and continuous symmetries breaking and all phases culminate in a multicritical point. In the open system, we show that infinitesimal dissipation erases the phase with broken continuous symmetry and radically alters the model's phase diagram. The multicritical point now becomes brittle and splits into two tricritical points where first- and second-order symmetry-breaking transitions meet...
May 4, 2018: Physical Review Letters
https://www.readbyqxmd.com/read/29775317/a-combined-sfg-and-thin-liquid-film-study-of-the-specific-effect-of-monovalent-cations-on-interfacial-water-structure
#16
Afshin Asadzadeh Shahir, Khristo Khristov, Khoi Tan Nguyen, Anh V Nguyen, Elena D Mileva
Some salts have been recently shown to decrease the SFG (sum frequency generation spectroscopy) intensity of the hydrogen-bonded water molecules, but a quantitative explanation is still awaited. Here we report a similar trend for the chloride salts of monovalent cations, i.e., LiCl, NaCl, and CsCl, at low concentrations. Specifically, we revealed not only the specific adsorption of cations at the water surface but also the concentration-dependent effect of ions on the SFG response of the interfacial water molecules...
May 18, 2018: Langmuir: the ACS Journal of Surfaces and Colloids
https://www.readbyqxmd.com/read/29775292/entropy-as-a-driver-of-selectivity-for-inhibitor-binding-to-histone-deacetylase-6
#17
Nicholas J Porter, Florence F Wagner, David W Christianson
Among the metal-dependent histone deacetylases, the class IIb isozyme HDAC6 is remarkable because of its role in the regulation of microtubule dynamics in the cytosol. Selective inhibition of HDAC6 results in microtubule hyperacetylation, leading to cell cycle arrest and apoptosis, which is a validated strategy for cancer chemotherapy and the treatment of other disorders. HDAC6 inhibitors generally consist of a Zn2+ -binding group such as a hydroxamate, a linker, and a capping group; the capping group is a critical determinant of isozyme selectivity...
May 18, 2018: Biochemistry
https://www.readbyqxmd.com/read/29775274/oxide-based-composite-electrolytes-using-na3zr2si2po12-na3ps4-interfacial-ion-transfer
#18
Kousuke Noi, Yuka Nagata, Takashi Hakari, Kenji Suzuki, So Yubuchi, Yusuke Ito, Atsushi Sakuda, Akitoshi Hayashi, Masahiro Tatsumisago
All-solid-state sodium batteries using Na3Zr2Si2PO12 (NASICON) solid electrolytes are promising candidates for safe and low-cost advanced rechargeable battery systems. Although NASICON electrolytes have intrinsically high sodium ion conductivities, their high sintering temperatures interfere with the immediate development of high-performance batteries. In this work, sintering-free NASICON-based composites with Na3PS4 (NPS) glass-ceramics were prepared to combine the high grain-bulk conductivity of NASICON and the interfacial formation ability of NPS...
May 18, 2018: ACS Applied Materials & Interfaces
https://www.readbyqxmd.com/read/29775247/microspheres-self-assembled-by-anti-site-defect-less-nanocrystal-lifepo4-c-rgo-to-achieve-both-high-rate-capability-and-high-tap-density-for-li-ion-batteries
#19
Hongbin Wang, Lijia Liu, Runwei Wang, Xiao Yan, Ziqi Wang, Jiangtao Hu, Haibiao Chen, Shang Jiang, Ling Ni, Hailong Qiu, Haitong Tang, Yingjin Wei, Zongtao Zhang, Qiu Shilun, Feng Pan
LiFePO4@C/rGO hierarchical microspheres with superior electrochemical activity and high tap density were first synthesized using a Fe3+-based single inorganic precursor (LiFePO4OH@RF/GO) obtained from a template-free self-assembly synthesis, following with direct calcination. The synthesis process requires no physical mixing step. The phase transformation path way from tavorite LiFePO4OH to olivine LiFePO4 upon calcination was determined by the in situ high temperature XRD technique. Benefitted from the unique structure of the material, these microspheres can be densely packed together, giving a high tap density of 1...
May 18, 2018: ChemSusChem
https://www.readbyqxmd.com/read/29775244/water-oxidation-electrocatalysis-with-a-cobalt-borate-based-hybrid-system-under-neutral-conditions
#20
Emine Ayşe Turhan, Satya Vijaya Kumar Nune, Emine Ülker, Ufuk Şahin, Yavuz Dede, Ferdi Karadas
Development of new water oxidation electrocatalysts, which are both stable and efficient particularly in neutral conditions, holds great promise for overall water splitting. In this study, electrocatalytic water oxidation performance of a new cobalt-based catalyst, Co3(BO3)2, with a Kotoite-type crystal structure was investigated in neutral conditions. The catalyst was also hybridized with CNTs to enhance its electrocatalytic properties. A remarkable increase in catalytic current along with a significant shift in the onset overpotential was observed in Co3(BO3)2@CNT...
May 18, 2018: Chemistry: a European Journal
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