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https://www.readbyqxmd.com/read/27911255/euzebyella-marina-sp-nov-isolated-from-seawater
#1
Yan-Jiao Zhang, Jia-Rui Zhao, Xi-Ying Zhang, Guo-Zhong Chen, Ming-Yang Zhou, Xu-Hua Mo, Hai-Lun He, Shiyong Chen
A Gram-negative, aerobic, yellow-pigmented, non-flagellated, non-gliding, oxidase- and catalase- positive bacterium, designated CY01T, was isolated from seawater of the Yellow Sea. Strain CY01T grew at 15-37 C (optimum, 30 C), at pH 5-8 (optimum, 6.5-7.5) and with 0.5-12 % (w/v) NaCl (optimum, 0.5-3.5 %). It could not produce flexirubin-type pigment or reduce nitrate to nitrite. Strain CY01T showed the highest 16S rRNA gene sequence similarity to type strain of Euzebyella saccharophila (97.0 %) and clustered tightly with the Euzebyella species in the phylogenetic trees based on the 16S rRNA gene sequences...
December 1, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902370/polaribacter-lacunae-sp-nov-isolated-from-a-lagoon
#2
Heeyoung Kang, Haneul Kim, Yochan Joung, Kiseong Joh
An aerobic, Gram-stain-negative, rod-shaped bacterium designated HMF2268T was isolated from a lagoon in the Republic of Korea. Comparative 16S rRNA gene sequence analysis showed that strain HMF2268T belonged to the genus Polaribacter and was most closely related to Polaribacter huanghezhanensis (96.8 % sequence similarity). Cellular fatty acids were dominated by iso-C15:0, iso-C15:0 3-OH, anteiso-C15:0 and iso-C15:1 G. The predominant respiratory quinone was menaquinone-6 (MK-6). The major polar lipids were phosphatidylethanolamine, three unidentified aminolipids and two unidentified polar lipids...
November 24, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902352/cohnella-lubricantis-sp-nov-isolated-from-a-coolant-lubricant-solution
#3
Peter Kämpfer, Stefanie P Glaeser, Hans-Jürgen Busse
A Gram-staining-positive, aerobic, non-endospore forming organism, isolated from a coolant lubricant solution was studied for its taxonomic position. On the basis of 16S rRNA gene sequence similarity comparisons, strain KSS-154-50T was grouped into the genus Cohnella, most closely related to Cohnella formosensis ALFALFA-35T (97.3 %), Cohnella rhizosphaerae CSE-5610T (97.1 %) and Cohnella nanjingensis D-45T (97.0%). The 16S rRNA gene sequence similarity to other Cohnella species was < 97.0 %. The fatty acid profile from whole cell hydrolysates was very similar to those reported for other Cohnella species supported the allocation to the genus Cohnella...
November 9, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902346/hymenobacter-rutilus-sp-nov-isolated-from-marine-sediment-in-arctic
#4
Myong Chol Kim, Chol Myong Kim, Ok Chol Kang, Yumin Zhang, Zuobing Liu, Danzeng Wangmu, Ziyan Wei, Yao Huang, Fang Peng
Strain K2-33028T, appeared brick-red colony on R2A plate, was isolated from marine sediment sample in Kings Bay, Svalbard Archipelago, Norway. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain K2-33028T belonged to the genus Hymenobacter. Cells were Gram-reaction-negative, non-spore-forming, aerobic, rod-shaped bacterium without motility. Growth occurred at 4-37℃ (optimum 28℃) and at pH 6.0-8.0 (optimum pH 7.0). Cells contained menaquinone-7, as the main respiratory quinone, and iso-C15:0, summed feature 3 (comprising C16:1 ω7c and/or C16:1 ω6c), C16:1 ω5c, summed feature 4 (comprising anteiso-C17:1 B and/or iso-C17:1 I) and anteiso-C15:0 as the major cellular fatty acids...
November 21, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902318/streptomyces-capparidis-sp-nov-a-novel-endophytic-actinobacterium-isolated-from-fruits-of-capparis-spinosa-l
#5
Hong-Fei Wang, Qiu-Li Li, Min Xiao, Yong-Guang Zhang, Xing-Kui Zhou, Manik Prabhu Narsing Rao, Yan-Qing Duan, Wen-Jun Li
A novel endophytic actinobactrium strain, designated EGI 6500195T, was isolated from Capparis spinosa. Growth occurred at 10-45 °C (optimum 30 °C), pH 6-8 (optimum pH 7) and in the presence of 0-1% NaCl (w/v). The strain EGI 6500195T shared the highest 16S rRNA gene sequence similarity (97.74 %) with Streptomyces vitaminophilus DSM 41686T and less than 97% sequence similarities with other members of the genus Streptomyces. The diagnostic amino acid in the peptidoglycan was LL-diaminopimelic acid. Whole-cell hydrolysates contained glucose, ribose,fructose and mannose...
October 18, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902317/psychromicrobium-silvestre-gen-nov-sp-nov-a-novel-actinobacterium-isolated-from-alpine-forest-soils
#6
Peter Schumann, De-Chao Zhang, Luís Franca, Luciana Albuquerque, Milton S da Costa, Rosa Margesin
Two Gram-stain-variable, non-motile, catalase-positive and cytochrome c oxidase-negative bacteria, designated AK20-18T and AM20-54, were isolated from forest soil samples collected in the Italian Alps. Growth occurred at a temperature range of 5-30 °C, at pH 6-9 and in the presence of 0-5 % (w/v) NaCl. The 16S rRNA gene sequence similarity between strains AK20-18T and AM20-54 was 100 %. Phylogenetic analysis based on 16S rRNA gene sequence showed that AK20-18T had highest 16S rRNA gene sequence similarity with the type strain of Arthrobacter psychrochitiniphilus (96...
November 21, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902310/paenibacillus-silvae-sp-nov-isolated-from-tropical-rainforest-soil
#7
Huiqin Huang, Fute Zhang, Min Liu, Ying Cui, Qianguang Sun, Jun Zhu, Xiaoxiao Zou, Shixiang Bao
Two Gram-stain-positive, facultatively aerobic, endospore-forming and rod-shaped bacteria, designated DB13031T and DB13311, were isolated from soil of Jiaxi Nature Reserve in Hainan, China. 16S rRNA gene analysis of the strains DB13031T and DB13311 showed that they were within the Paenibacillus cluster, with the highest similarities of Paenibacillus cucumis AP-115T (98.4 % and 98.3 %, respectively), Paenibacillus barcinonensis BP-23T (98.3 % and 98.2 %, respectively) and Paenibacillus oceanisediminis L10T (97...
October 25, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902303/arthrobacter-ginkgonis-sp-nov-a-novel-actinomycete-isolated-from-rhizosphere-of-ginkgo-biloba-l
#8
Juan Cheng, Meng-Yue Zhang, Jian-Chao Zhao, Huan Xu, Yu Zhang, Tian-Yuan Zhang, Ying-Ying Wu, Yi-Xuan Zhang
A Gram-staining-positive, aerobic and displaying a rod-coccus growth life cycle actinobacterial strain, designated as SYP-A7299T, was isolated from the rhizosphere of Ginkgo biloba L. Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain SYP-A7299T belongs to the genus Arthrobacter and most closely related to Arthrobacter halodurans JSM 078085T (97.4 %). The DNA-DNA relatedness values between strain SYP-A7299T and A. halodurans JSM 078085T was 37 % ± 2.9. The cell wall peptidoglycan was A4α, and with glucose and galactose as whole-cell sugars...
October 27, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902299/chryseobacterium-nepalense-sp-nov-isolated-from-oil-contaminated-soil
#9
Dhiraj Kumar Chaudhary, Jaisoo Kim
During the study of hydrocarbon-degrading bacteria in the oil-contaminated soil of Biratnagar, Morang, Nepal, a yellow-coloured, Gram-staining negative, aerobic, non-motile, and rod shaped bacterium, designated strain C-5-3T, was isolated. This strain was taxonomically characterized by a polyphasic approach. Based on the 16S rRNA gene sequence analysis, strain C-5-3T belongs to the genus Chryseobacterium and is closely related to 'Chryseobacterium profundimaris' DY46 (98.19% sequence similarity), Chryseobacterium takakiae AG1-2T (98...
November 21, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902296/allostreptomyces-psammosilenae-gen-nov-sp-nov-an-endophytic-actinobacterium-isolated-from-the-roots-of-psammosilene-tunicoides-and-emended-description-of-the-family-streptomycetaceae-waksman-and-henrici-1943-al-emend-rainey-et-al-1997-emend-kim-et-al-2003-emend
#10
Mei-Juan Huang, Manik Prabhu Narsing Rao, Nimaichand Salam, Min Xiao, Hai-Quan Huang, Wen-Jun Li
A Gram-staining positive actinobacterium, designated strain YIM DR4008T was isolated from the root sample of Psammosilene tunicoides collected from Lijiang, Yunnan, China. Strain YIM DR4008T could grow at temperature ranging from 10 to 50 °C (optimum at 28-30 °C), pH 5.0-11.0 (optimum pH 7.0) and in the presence of up to 4 % (w/v) NaCl. Sequence analysis of the 16S ribosomal RNA gene revealed that strain YIM DR4008T shared highest similarity (95.0 %) with Streptomyces griseoplanus NBRC 12779T and < 95 % similarity with other known members of the genera Streptomyces, Kitasatospora and Streptacidiphilus...
October 27, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902295/kribbella-deserti-sp-nov-isolated-from-rhizosphere-soil-of-ammopiptanthus-mongolicus
#11
Ji-Quan Sun, Lian Xu, Yan Guo, Wei-Le Li, Zhong-Qiu Shao, Yuan-Liang Yang, Xiao-Lei Wu
A Gram-staining-positive, aerobic bacterial strain, designated SL15-1T was isolated from desert soil which sampled from the rhizosphere of Ammopiptanthus mongolicus, Hangjin Banner, Inner Mongolia, northern China. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain SL15-1T was clustered with Kribbella strains, sharing the highest similarity of 16S rRNA gene (96.97%) to Kribbella sandramycini DSM 15626T. Strain SL15-1T contained diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), phosphatidylcholine (PC), an unknown phospholipid (PL), an unknown lipid (L) and two unknown aminophospholipids (APL) as the major polar lipids...
November 25, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902294/actinocrinis-puniceicyclus-gen-nov-sp-nov-a-novel-actinobacterium-isolated-from-an-acidic-spring-in-kootenay-national-park-canada
#12
Joong-Jae Kim, Colbran E Marjerrison, Sabrina L Cornish Shartau, Allyson L Brady, Christine E Sharp, W Irene C Rijpstra, Jaap S Sinninghe Damsté, Peter Schumann, Stephen E Grasby, Peter F Dunfield
An aerobic, mildly acidophilic actinobacterium was isolated from the Ochre Beds bog in Kootenay National Park, Canada. Cells of isolate OB1T were Gram-positive, non-motile, pink-to purple-pigmented filaments. The pH range for growth was 3.5 - 6.5 (optimum 5.5), and the temperature range was 13-37 oC. The major cellular fatty acids were 16:0 iso (28.5 %), 15:0 iso (14.6 %) and 15:0 anteiso (14.3 %), and the major polar lipid was phosphohexose. The major quinone was menaquinone-11 (MK-11) and the peptidoglycan type was A1γ...
November 16, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902292/terrimonas-crocea-sp-nov-isolated-from-the-till-of-high-arctic-glacier-midtre-lov%C3%A3-nbreen-in-the-west-svalbard-archipelago
#13
Myong Chol Kim, Ok Chol Kang, Chol Myong Kim, Yumin Zhang, Zuobing Liu, Ziyan Wei, Yao Huang, Wangmu Danzeng, Fang Peng
A yellow-pigmented bacteria strain, designated M1-33108T, was isolated from the till of high Arctic glacier Midtre Lovénbreen (MLB) near Ny-Ålesund, in the West Svalbard Archipelago, Norway. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain M1-33108T belonged to the genus Terrimonas and its closest neighbor was Terrimonas arctica R9-86T with 96.12% 16S rRNA gene sequence similarity. Strain M1-33108T was Gram-reaction-negative, aerobic, non-spore-forming, rod-shaped bacterium that lacked motility...
November 24, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902287/runella-palustris-sp-nov-isolated-from-wetland-freshwater
#14
Haneul Kim, Heeyoung Kang, Yochan Joung, Kiseong Joh
A novel, Gram-stain-negative, aerobic, non-motile and filamentous bacterial strain, designated HMF3829T, was isolated from wetland freshwater in Gyeong-an wetland, Republic of Korea. A phylogenetic tree based on 16S rRNA gene sequences showed that strain HMF3829T formed a lineage within the genus Runella. Strain HMF3829T was closely related to Runella slithyformis DSM 19594T (95.2 % sequence similarity), R. limosa DSM 17973T (94.9 %), R. zeae NS12T (94.2 %) and R. defluvii EMB13T (94.0 %). The major fatty acids of strain HMF3829T were iso-C15:0 (26...
November 24, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902286/macrococcus-canis-sp-nov-a-skin-bacterium-associated-with-infections-in-dogs
#15
Stefanie Gobeli Brawand, Kerstin Cotting, Elena Gómez-Sanz, Alexandra Collaud, Andreas Thomann, Isabelle Brodard, Sabrina Rodriguez Campos, Christian Strauss, Vincent Perreten
Gram-stain positive cocci were isolated from miscellaneous sites of the skin of healthy dogs as well as from infection sites in dogs. The closest relative by sequencing of the 16S rRNA was Macrococcus caseolyticus with 99.7% sequence identity, but compared to M. caseolyticus, the novel strains shared only 90.8% to 93.5% DNA identity to cpn60, dnaJ, rpoB, and sodA partial genes, respectively. The two species also exhibited other phenotypic characteristics and the majority displayed a visible haemolysis on sheep blood agar, while M...
November 16, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902285/raineyella-antarctica-gen-nov-sp-nov-a-novel-psychrotolerant-d-amino-acid-utilizing-anaerobe-isolated-from-two-geographic-locations-of-the-southern-hemisphere
#16
Elena V Pikuta, Rodolfo Javier Menes, Alisa Michelle Bruce, Zhe Lyu, Nisha Patel, Yuchen Liu, Richard Brice Hoover, Hans Jürgen Busse, Paul A Lawson, William Barney Whitman
Gram-positive bacterium, strain LZ-22T, was isolated from a rhizosphere of moss Leptobryum sp. collected at the shore of Lake Zub in Antarctica. Cells were motile, straight or pleomorphic rods with sizes of 0.6-1.0 x 3.5-10 μm. The new isolate was a facultatively anaerobic, catalase positive, psychrotolerant mesophile. Growth was observed at 3-41 oC (optimum 24-30 oC), 0-7 % NaCl, w/v (optimum, 0.25 %) and pH 4.0-9.0 (optimum 7.8). The quinone system of strain LZ-22T possessed predominately menaquinones MK-9(H4)...
October 12, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902283/lutibacter-litorisediminis-sp-nov-isolated-from-a-tidal-flat
#17
Sooyeon Park, Sun Young Yoon, Min-Ji Ha, Yong-Taek Jung, Jung-Hoon Yoon
A Gram-stain-negative, non-motile, aerobic and rod-shaped bacterium, designated OITF-20T, was isolated from the tidal flat in Oido, an island of South Korea. The novel strain grew optimally at 25 °C, at pH 7.0-8.0 and in the presence of 1.0-2.0 % (w/v) NaCl. In the neighbour-joining phylogenetic tree based on 16S rRNA gene sequences, strain OITF-20T fell within the clade comprising the type strains of Lutibacter species. Strain OITF-20T exhibited 16S rRNA gene sequence similarity values of 97.8, 97.6 and 97...
November 14, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902277/pedobacter-zeae-sp-nov-an-endophytic-bacterium-isolated-from-maize-root
#18
Jun-Lian Gao, Pengbo Sun, Xiao-Jie Mao, Yan-Li Du, Bing-Yan Liu, Jian-Guang Sun
A novel Gram-staining-negative, aerobic, non-motile by gliding and rod-shaped strain designated 22T was isolated from surface-sterilized root tissue of maize planted in the Fangshan District of Beijing, People's Republic of China. The highest levels of 16S rRNA gene sequence similarity were found with respect to Pedobacter suwonensis15-52T (97.5 %), Pedobacter terrae DS-57T (97.1 %) and Pedobacter alluvionis NWER-II11T (97.0 %). Phylogenetic analysis based on 16S rRNA gene sequence data indicated that strain 22T is a member of the genus Pedobacter...
October 25, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902263/terrimonas-rhizosphaerae-sp-nov-isolated-from-ginseng-rhizosphere-soil
#19
Song-Ih Han, Ye-Rim Lee, Ju-Ok Kim, Kyung-Sook Whang
The novel isolate belonging to the genus Terrimonas, designated CR94T, was isolated from rhizosphere soil of ginseng field in Geumsan in Korea. Cells of Strain CR94T were strictly aerobic, Gram staining negative, non-motile, non-filamentous single rods. Growth was observed at 10-37℃ (optimum 28℃) and at pH4.0-10.0 (optimum pH6.0). Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain CR94T belonged to the genus Terrimonas, showing the highest sequence similarity to Terrimonas lutea DYT (97...
November 2, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902261/paenibacillus-qinlingensis-sp-nov-an-indole-3-acetic%C3%A2-acid-producing-bacterium-isolated-from-roots-of-sinopodophyllum%C3%A2-hexandrum-royle-ying
#20
Kaiyun Xin, Muhang Li, Chaoqiong Chen, Xu Yang, Qiqi Li, Juanli Cheng, Lei Zhang, Xihui Shen
A novel indole-3-acetic acid-producing bacterium, designated TEGT-2T, was isolated from the roots of Sinopodophyllum hexandrum collected from Qinling Mountains in shaanxi province, Northwestern China, and was subjected to a taxonomic study by using a polyphasic approach. Cells of strain TEGT-2T were Gram-stain-positive, strictly aerobic, endospore-forming rods and motile by means of peritrichous flagella. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain TEGT-2T was a member of the genus Paenibacillus, exhibiting the highest sequence similarity to Paenibacillus pectinilyticus KCTC 13222T (97...
November 16, 2016: International Journal of Systematic and Evolutionary Microbiology
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