keyword
https://read.qxmd.com/read/38397416/identifying-ogn-as-a-biomarker-covering-multiple-pathogenic-pathways-for-diagnosing-heart-failure-from-machine-learning-to-mechanism-interpretation
#1
JOURNAL ARTICLE
Yihao Zhu, Bin Chen, Yao Zu
BACKGROUND: The pathophysiologic heterogeneity of heart failure (HF) necessitates a more detailed identification of diagnostic biomarkers that can reflect its diverse pathogenic pathways. METHODS: We conducted weighted gene and multiscale embedded gene co-expression network analysis on differentially expressed genes obtained from HF and non-HF specimens. We employed a machine learning integration framework and protein-protein interaction network to identify diagnostic biomarkers...
February 2, 2024: Biomolecules
https://read.qxmd.com/read/38341328/identification-and-immunoassay-of-prognostic-genes-associated-with-the-complement-system-in-acute-myeloid-leukemia
#2
JOURNAL ARTICLE
Chen Liu, Lin Liu
Studies have associated the development of pulmonary leukemia with the activation of the complement system. However, the roles and mechanisms of complement system-related genes (CSRGs) in acute myeloid leukemia (AML) have not been investigated extensively. This study used The Cancer Genome Atlas (TCGA)-AML and GSE37642 datasets. Differentially expressed CSRGs (CSRDEGs) were identified by overlapping genes differentially expressed between the high and low CSRG score groups and key module genes identified in a weighted gene co-expression network analysis...
February 9, 2024: Journal of the Formosan Medical Association
https://read.qxmd.com/read/38280850/single-cell-multiomics-decodes-regulatory-programs-for-mouse-secondary-palate-development
#3
JOURNAL ARTICLE
Fangfang Yan, Akiko Suzuki, Chihiro Iwaya, Guangsheng Pei, Xian Chen, Hiroki Yoshioka, Meifang Yu, Lukas M Simon, Junichi Iwata, Zhongming Zhao
Perturbations in gene regulation during palatogenesis can lead to cleft palate, which is among the most common congenital birth defects. Here, we perform single-cell multiome sequencing and profile chromatin accessibility and gene expression simultaneously within the same cells (n = 36,154) isolated from mouse secondary palate across embryonic days (E) 12.5, E13.5, E14.0, and E14.5. We construct five trajectories representing continuous differentiation of cranial neural crest-derived multipotent cells into distinct lineages...
January 27, 2024: Nature Communications
https://read.qxmd.com/read/38084139/linc01936-inhibits-the-proliferation-and-metastasis-of-lung-squamous-cell-carcinoma-probably-by-emt-signaling-and-immune-infiltration
#4
JOURNAL ARTICLE
Qinqin Tian, Xiyao Liu, Ang Li, Hongjiao Wu, Yuning Xie, Hongmei Zhang, Fengjun Wu, Yating Chen, Congcong Bai, Xuemei Zhang
PURPOSE: To discover the biological function and potential mechanism of LINC01936 in the development of lung squamous cell carcinoma (LUSC). METHODS: Transcriptome data of LUSC from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases were used to analyze the differentially expressed lncRNAs in LUSC and normal tissues by R "DEseq2", "edgeR" and "limma" packages. The subcellular localization of LINC01936 was predicted by lncLocator. Cell proliferation and apoptosis were measured by CCK-8, MTT assay and Hoechst fluorescence staining...
2023: PeerJ
https://read.qxmd.com/read/37950445/long-noncoding-rna-nrav-in-the-12q24-31-risk-locus-drives-gastric-cancer-development-through-glucose-metabolism-reprogramming
#5
JOURNAL ARTICLE
Yan Zhang, Yun Gao, Fengyuan Li, Qi Qi, Qian Li, Yuanliang Gu, Zhonghua Zheng, Beiping Hu, Tianpei Wang, Erbao Zhang, Hao Xu, Li Liu, Tian Tian, Guangfu Jin, Caiwang Yan
Long noncoding RNAs (lncRNAs) serve as vital candidates to mediate cancer risk. Here, we aimed to identify the risk single nucleotide polymorphisms (SNPs)-induced lncRNAs and to investigate their roles in gastric cancer (GC) development. Through integrating the differential expression analysis of lncRNAs in GC tissues and expression quantitative trait loci (eQTL) analysis in normal stomach tissues and GC tissues, as well as genetic association analysis based on GC genome-wide association studies (GWASs) and an independent validation study, we identified four lncRNA-related SNPs consistently associated with GC risk, including SNHG7 (OR = 1...
November 9, 2023: Carcinogenesis
https://read.qxmd.com/read/37568909/diagnostic-utility-of-immunohistochemical-detection-of-meox2-sox11-insm1-and-egfr-in-gliomas
#6
JOURNAL ARTICLE
Jiri Soukup, Lucie Gerykova, Anjali Rachelkar, Helena Hornychova, Michael Christian Bartos, Petr Krupa, Barbora Vitovcova, Zuzana Pleskacova, Petra Kasparova, Katerina Dvorakova, Veronika Skarkova, Jiri Petera
Histological identification of dispersed glioma cells in small biopsies can be challenging, especially in tumours lacking the IDH1 R132H mutation or alterations in TP53. We postulated that immunohistochemical detection of proteins expressed preferentially in gliomas (EGFR, MEOX2, CD34) or during embryonal development (SOX11, INSM1) can be used to distinguish reactive gliosis from glioma. Tissue microarrays of 46 reactive glioses, 81 glioblastomas, 34 IDH1-mutant diffuse gliomas, and 23 gliomas of other types were analysed...
July 31, 2023: Diagnostics
https://read.qxmd.com/read/37511274/carbamoylated-erythropoietin-induced-cerebral-blood-perfusion-and-vascular-gene-regulation
#7
JOURNAL ARTICLE
Jayanarayanan Sadanandan, Monica Sathyanesan, Yutong Liu, Neeraj K Tiwari, Samuel S Newton
Cerebral hypoperfusion is associated with enhanced cognitive decline and increased risk of neuropsychiatric disorders. Erythropoietin (EPO) is a neurotrophic factor known to improve cognitive function in preclinical and clinical studies of neurodegenerative and psychiatric disorders. However, the clinical application of EPO is limited due to its erythropoietic activity that can adversely elevate hematocrit in non-anemic populations. Carbamoylated erythropoietin (CEPO), a chemically engineered non-erythropoietic derivative of EPO, does not alter hematocrit and maintains neurotrophic and behavioral effects comparable to EPO...
July 15, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/37200858/the-mir-148-152-family-contributes-to-angiogenesis-of-human-pluripotent-stem-cell-derived-endothelial-cells-by-inhibiting-meox2
#8
JOURNAL ARTICLE
Fengyue Ding, Hongchun Wu, Xinglong Han, Xue Jiang, Yang Xiao, Yuanyuan Tu, Miao Yu, Wei Lei, Shijun Hu
Human pluripotent stem cell-derived endothelial cells (hPSC-ECs) represent a promising source of human ECs urgently needed for the study of cardiovascular disease mechanisms, cell therapy, and drug screening. This study aims to explore the function and regulatory mechanism of the miR-148/152 family consisting of miR-148a, miR-148b, and miR-152 in hPSC-ECs, so as to provide new targets for improving EC function during the above applications. In comparison with the wild-type (WT) group, miR-148/152 family knockout (TKO) significantly reduced the endothelial differentiation efficiency of human embryonic stem cells (hESCs), and impaired the proliferation, migration, and capillary-like tube formatting abilities of their derived ECs (hESC-ECs)...
June 13, 2023: Molecular Therapy. Nucleic Acids
https://read.qxmd.com/read/37125668/identification-of-mirnas-and-target-genes-associated-with-lymph-node-metastasis-in-cervical-cancer-using-bioinformatics-analysis
#9
JOURNAL ARTICLE
Yishan Ding, Xiaorong Wu, Xiaofeng Yang
This study was designed to identify the differentially expressed miRNAs (DEMs) and genes (DEGs) in metastatic cervical cancer using bioinformatic tools. In this study, fifty-seven DEMs (48 downregulated and 9 upregulated) were identified, among which miR-4459 and miR-3195 expression was negatively associated with overall survival of cervical cancer patients. Then, 476 target DEGs were determined, and protein-protein interaction network was constructed. Seventeen hub genes (LONRF2, CCNE2, AURKA, SYT1, NEGR1, PPP1R12B, GABRP, RAD51, CDK1, FBLN5, PRKG1, CDC6, CACNA1C, MEOX2, ANLN, MYLK, and EDNRB) were finally selected to construct the miRNA-hub gene network...
April 26, 2023: Toxicology Mechanisms and Methods
https://read.qxmd.com/read/37051268/identifying-molecular-and-functional-similarities-and-differences-between-human-primary-cardiac-valve-interstitial-cells-and-ventricular-fibroblasts
#10
JOURNAL ARTICLE
Martha E Floy, Fathima Shabnam, Sophie E Givens, Vaidehi A Patil, Yunfeng Ding, Grace Li, Sushmita Roy, Amish N Raval, Eric G Schmuck, Kristyn S Masters, Brenda M Ogle, Sean P Palecek
Introduction: Fibroblasts are mesenchymal cells that predominantly produce and maintain the extracellular matrix (ECM) and are critical mediators of injury response. In the heart, valve interstitial cells (VICs) are a population of fibroblasts responsible for maintaining the structure and function of heart valves. These cells are regionally distinct from myocardial fibroblasts, including left ventricular cardiac fibroblasts (LVCFBs), which are located in the myocardium in close vicinity to cardiomyocytes. Here, we hypothesize these subpopulations of fibroblasts are transcriptionally and functionally distinct...
2023: Frontiers in Bioengineering and Biotechnology
https://read.qxmd.com/read/36982941/systematic-selection-signature-analysis-of-chinese-gamecocks-based-on-genomic-and-transcriptomic-data
#11
JOURNAL ARTICLE
Xufang Ren, Zi Guan, Xiurong Zhao, Xinye Zhang, Junhui Wen, Huan Cheng, Yalan Zhang, Xue Cheng, Yuchen Liu, Zhonghua Ning, Lujiang Qu
Selection pressures driven by natural causes or human interference are key factors causing genome variants and signatures of selection in specific regions of the genome. Gamecocks were bred for cockfighting, presenting pea-combs, larger body sizes, stronger limbs, and higher levels of aggression than other chickens. In this study, we aimed to explore the genomic differences between Chinese gamecocks and commercial, indigenous, foreign, and cultivated breeds by detecting the regions or sites under natural or artificial selection using genome-wide association studies (GWAS), genome-wide selective sweeps based on the genetic differentiation index ( F ST ), and transcriptome analyses...
March 20, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/36980184/gal-1-expression-analysis-in-the-gliocat-multicenter-study-role-as-a-prognostic-factor-and-an-immune-suppressive-biomarker
#12
JOURNAL ARTICLE
Neus Martínez-Bosch, Noelia Vilariño, Francesc Alameda, Sergi Mojal, Montserrat Arumí-Uria, Cristina Carrato, Iban Aldecoa, Teresa Ribalta, Noemí Vidal, Beatriz Bellosillo, Silvia Menéndez, Sonia Del Barco, Oscar Gallego, Estela Pineda, Raquel López-Martos, Ainhoa Hernández, Carlos Mesia, Anna Esteve-Codina, Nuria de la Iglesia, Carme Balañá, María Martínez-García, Pilar Navarro
Glioblastoma (GBM) is the most frequent primary malignant brain tumor and has a dismal prognosis. Unfortunately, despite the recent revolution of immune checkpoint inhibitors in many solid tumors, these have not shown a benefit in overall survival in GBM patients. Therefore, new potential treatment targets as well as diagnostic, prognostic, and/or predictive biomarkers are needed to improve outcomes in this population. The β-galactoside binding protein Galectin-1 (Gal-1) is a protein with a wide range of pro-tumor functions such as proliferation, invasion, angiogenesis, and immune suppression...
March 8, 2023: Cells
https://read.qxmd.com/read/36870288/role-of-adrenomedullin-2-intermedin-in-the-pathogenesis-of-neovascular-age-related-macular-degeneration
#13
JOURNAL ARTICLE
Shinji Kakihara, Yorishige Matsuda, Kazutaka Hirabayashi, Akira Imai, Yasuhiro Iesato, Takayuki Sakurai, Akiko Kamiyoshi, Megumu Tanaka, Yuka Ichikawa-Shindo, Hisaka Kawate, Yunlu Zhao, Yan Zhang, QianQian Guo, Peixuan Li, Naho Onishi, Toshinori Murata, Takayuki Shindo
Adrenomedullin 2 (AM2; also known as intermedin) is a member of the adrenomedullin (AM) peptide family. Similarly to AM, AM2 partakes in a variety of physiological activities. AM2 has been reported to exert protective effects on various organ disorders; however, its significance in the eye is unknown. We investigated the role of AM2 in ocular diseases. The receptor system of AM2 was expressed more abundantly in the choroid than in the retina. In an oxygen-induced retinopathy model, physiological and pathologic retinal angiogenesis did not differ between AM2-knockout (AM2-/-) and wild-type mice...
January 10, 2023: Laboratory Investigation; a Journal of Technical Methods and Pathology
https://read.qxmd.com/read/36834919/circinsr-inhibits-adipogenic-differentiation-of-adipose-derived-stromal-vascular-fractions-through-the-mir-152-meox2-axis-in-sheep
#14
JOURNAL ARTICLE
Bishi Zhao, Hanyue Zhang, Dan Zhao, Yu Liang, Liying Qiao, Jianhua Liu, Yangyang Pan, Kaijie Yang, Wenzhong Liu
Adipose tissue plays a crucial role in energy metabolism. Several studies have shown that circular RNA (circRNA) is involved in the regulation of fat development and lipid metabolism. However, little is known about their involvement in the adipogenic differentiation of ovine stromal vascular fractions (SVFs). Here, based on previous sequencing data and bioinformatics analysis, a novel circINSR was identified in sheep, which acts as a sponge to promote miR-152 in inhibiting the adipogenic differentiation of ovine SVFs...
February 9, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/36740146/ring-finger-protein-10-improves-pirarubicin-induced-cardiac-inflammation-by-regulating-the-ap-1-meox2-signaling-pathway
#15
JOURNAL ARTICLE
Liang Duan, Heng Tang, Ying Lan, Hongwei Shi, Peng Pu, Quan He
OBJECTIVES: Pirarubicin (THP) is widely used in clinical antitumor therapy, but its cardiotoxicity seriously affects the therapeutic effect in patients. In the study, we investigated the role of ring finger protein 10 (RNF10) in cardiotoxicity induced by THP. MATERIALS AND METHODS: A cardiac toxicity model in Sprague-Dawley (SD) rats induced by THP was established. Changes in diet, weight, electrocardiogram (ECG), and echocardiography were observed. Serum levels of brain natriuretic peptide (BNP), creatine kinase MB (CK-MB), cardiac troponin T (cTnT), and lactate dehydrogenase (LDH) were measured...
February 3, 2023: Toxicology and Applied Pharmacology
https://read.qxmd.com/read/36713029/ring-finger-protein-10-regulates-ap-1-meox2-to-mediate-pirarubicin-induced-cardiomyocyte-apoptosis
#16
JOURNAL ARTICLE
Hongwei Shi, Liang Duan, Ying Lan, Quan He, Peng Pu, Heng Tang
Pirarubicin (THP) is one of the classic chemotherapy drugs for cancer treatment. It is often clinically limited because of its cardiotoxicity. The occurrence and development of THP-mediated chemotherapy-related cardiotoxicity (CRC) may be reversed by RING finger protein 10 (RNF10). This study was performed with the aim of evaluating the inhibitory effect of RNF10 on THP-mediated CRC and its molecular mechanism. In vivo, we found that the expression of RNF10 decreased in THP-induced CRC rats, accompanied by Meox2 inhibition and AP-1 activation, resulting in increased cardiomyocyte apoptosis...
2023: Oxidative Medicine and Cellular Longevity
https://read.qxmd.com/read/36625258/low-expression-of-meox2-is-associated-with-poor-survival-in-patients-with-breast-cancer
#17
JOURNAL ARTICLE
Huxia Wang, Yanan Tang, Meixia Wang, Jing Zhao, Caixia Ding, Xiaomin Yang, Pihua Han, Peijun Liu
Aim: To investigate associations of MEOX2 expression with clinicopathological features and survival of breast cancer patients. Materials & methods: We used a breast cancer tissue microarray for immunohistochemistry. Associations between MEOX2 expression and clinicopathological features were analyzed using the χ-square test. Survival analysis was determined using a Kaplan-Meier curve. Multivariate Cox regression was used to determine associations of MEOX2 expression with overall survival. Results: We found that 74...
January 10, 2023: Biomarkers in Medicine
https://read.qxmd.com/read/36017822/abi2-mediated-meox2-klf4-nanog-axis-promotes-liver-cancer-stem-cell-and-drives-tumour-recurrence
#18
JOURNAL ARTICLE
Jiandi Chen, Huizi Li, Bin Zhang, Zhiyuan Xiong, Zhe Jin, Jiaxi Chen, Yang Zheng, Xiangnan Zhu, Shuixing Zhang
Tumour recurrence and drug resistance in hepatocellular carcinoma remain challenging. Cancer stem cells (CSCs) are responsible for tumour initiation because of their stemness characteristics. CSCs accounting for drug resistance and tumour relapse are promising therapeutic targets. We report that Abelson interactor 2 (ABI2) is a novel therapeutic target of HCC CSCs. First, ABI2 was upregulated in HCC tissues compared with liver tissues and was associated with tumour size, pathological grade, liver cirrhosis, worse prognosis and a high recurrence rate...
August 26, 2022: Liver International: Official Journal of the International Association for the Study of the Liver
https://read.qxmd.com/read/35904008/framework-nucleic-acids-enabled-pulmonary-artery-endothelial-cell-growth-inhibition-by-targeting-microrna-152
#19
JOURNAL ARTICLE
Zaichun You, Qiuhong Huang, Lilin Xu, Xueping Liu, Juan Fu, Boxuan Li, Yi Yang, Shuyi Li, Hang Qian, Guansong Wang
Pulmonary artery vascular endothelial dysfunction plays a pivotal role in the occurrence and progression of pulmonary vascular remodeling (PVR). To address this, aberrantly expressed non-coding microRNAs (miRNAs) are excellent therapeutic targets in human pulmonary artery endothelial cells (HPAECs). Here, we discovered and validated the overexpression of miRNA-152 in HPAECs under hypoxia and its role in endothelial cell dysfunction. We constructed a framework nucleic acid nanostructure that harbors six protruding single-stranded DNA segments that can fully hybridize with miRNA-152 (DNT-152)...
September 16, 2022: Chembiochem: a European Journal of Chemical Biology
https://read.qxmd.com/read/35900667/pi3k-p110%C3%AE-as-a-determinant-and-gene-therapy-for-atrial-enlargement-in-atrial-fibrillation
#20
REVIEW
Martin Ezeani, Sandeep Prabhu
Atrial fibrillation (AF) is an irregular heart rhythm, characterised by chaotic atrial activation, which is promoted by remodelling. Once initiated, AF can also propagate the progression of itself in the so-called ''AF begets AF''. Several lines of investigation have shown that signalling molecules, including reactive oxygen species, angiotensin II, and phosphoinositide 3-kinases (PI3Ks), in presence or absence of cardiovascular disease risk factors, stabilise and promote AF maintenance. In particular, reduced cardiac-specific PI3K activity that is not associated with oncology is cardiotoxic and increases susceptibility to AF...
July 28, 2022: Molecular and Cellular Biochemistry
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