keyword
MENU ▼
Read by QxMD icon Read
search

Cereal

keyword
https://www.readbyqxmd.com/read/28448065/construction-of-a-map-based-reference-genome-sequence-for-barley-hordeum-vulgare-l
#1
Sebastian Beier, Axel Himmelbach, Christian Colmsee, Xiao-Qi Zhang, Roberto A Barrero, Qisen Zhang, Lin Li, Micha Bayer, Daniel Bolser, Stefan Taudien, Marco Groth, Marius Felder, Alex Hastie, Hana Šimková, Helena Staňková, Jan Vrána, Saki Chan, María Muñoz-Amatriaín, Rachid Ounit, Steve Wanamaker, Thomas Schmutzer, Lala Aliyeva-Schnorr, Stefano Grasso, Jaakko Tanskanen, Dharanya Sampath, Darren Heavens, Sujie Cao, Brett Chapman, Fei Dai, Yong Han, Hua Li, Xuan Li, Chongyun Lin, John K McCooke, Cong Tan, Songbo Wang, Shuya Yin, Gaofeng Zhou, Jesse A Poland, Matthew I Bellgard, Andreas Houben, Jaroslav Doležel, Sarah Ayling, Stefano Lonardi, Peter Langridge, Gary J Muehlbauer, Paul Kersey, Matthew D Clark, Mario Caccamo, Alan H Schulman, Matthias Platzer, Timothy J Close, Mats Hansson, Guoping Zhang, Ilka Braumann, Chengdao Li, Robbie Waugh, Uwe Scholz, Nils Stein, Martin Mascher
Barley (Hordeum vulgare L.) is a cereal grass mainly used as animal fodder and raw material for the malting industry. The map-based reference genome sequence of barley cv. 'Morex' was constructed by the International Barley Genome Sequencing Consortium (IBSC) using hierarchical shotgun sequencing. Here, we report the experimental and computational procedures to (i) sequence and assemble more than 80,000 bacterial artificial chromosome (BAC) clones along the minimum tiling path of a genome-wide physical map, (ii) find and validate overlaps between adjacent BACs, (iii) construct 4,265 non-redundant sequence scaffolds representing clusters of overlapping BACs, and (iv) order and orient these BAC clusters along the seven barley chromosomes using positional information provided by dense genetic maps, an optical map and chromosome conformation capture sequencing (Hi-C)...
April 27, 2017: Scientific Data
https://www.readbyqxmd.com/read/28447635/a-chromosome-conformation-capture-ordered-sequence-of-the-barley-genome
#2
Martin Mascher, Heidrun Gundlach, Axel Himmelbach, Sebastian Beier, Sven O Twardziok, Thomas Wicker, Volodymyr Radchuk, Christoph Dockter, Pete E Hedley, Joanne Russell, Micha Bayer, Luke Ramsay, Hui Liu, Georg Haberer, Xiao-Qi Zhang, Qisen Zhang, Roberto A Barrero, Lin Li, Stefan Taudien, Marco Groth, Marius Felder, Alex Hastie, Hana Šimková, Helena Staňková, Jan Vrána, Saki Chan, María Muñoz-Amatriaín, Rachid Ounit, Steve Wanamaker, Daniel Bolser, Christian Colmsee, Thomas Schmutzer, Lala Aliyeva-Schnorr, Stefano Grasso, Jaakko Tanskanen, Anna Chailyan, Dharanya Sampath, Darren Heavens, Leah Clissold, Sujie Cao, Brett Chapman, Fei Dai, Yong Han, Hua Li, Xuan Li, Chongyun Lin, John K McCooke, Cong Tan, Penghao Wang, Songbo Wang, Shuya Yin, Gaofeng Zhou, Jesse A Poland, Matthew I Bellgard, Ljudmilla Borisjuk, Andreas Houben, Jaroslav Doležel, Sarah Ayling, Stefano Lonardi, Paul Kersey, Peter Langridge, Gary J Muehlbauer, Matthew D Clark, Mario Caccamo, Alan H Schulman, Klaus F X Mayer, Matthias Platzer, Timothy J Close, Uwe Scholz, Mats Hansson, Guoping Zhang, Ilka Braumann, Manuel Spannagl, Chengdao Li, Robbie Waugh, Nils Stein
Cereal grasses of the Triticeae tribe have been the major food source in temperate regions since the dawn of agriculture. Their large genomes are characterized by a high content of repetitive elements and large pericentromeric regions that are virtually devoid of meiotic recombination. Here we present a high-quality reference genome assembly for barley (Hordeum vulgare L.). We use chromosome conformation capture mapping to derive the linear order of sequences across the pericentromeric space and to investigate the spatial organization of chromatin in the nucleus at megabase resolution...
April 26, 2017: Nature
https://www.readbyqxmd.com/read/28446916/oil-accumulation-in-transgenic-potato-tubers-alters-starch-quality-and-nutritional-profile
#3
Madeline Mitchell, Jenifer Pritchard, Shoko Okada, Oscar Larroque, Dina Yulia, Filomena Pettolino, Nicolas Szydlowski, Surinder Singh, Qing Liu, Jean-Philippe Ral
Plant storage compounds such as starch and lipids are important for human and animal nutrition as well as industry. There is interest in diverting some of the carbon stored in starch-rich organs (leaves, tubers, and cereal grains) into lipids in order to improve the energy density or nutritional properties of crops as well as providing new sources of feedstocks for food and manufacturing. Previously, we generated transgenic potato plants that accumulate up to 3.3% triacylglycerol (TAG) by dry weight in the tubers, which also led to changes in starch content, starch granule morphology and soluble sugar content...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28446328/combined-gc-and-uhplc-hr-ms-based-metabolomics-to-analyze-durable-anti-fungal-resistance-processes-in-cereals
#4
Rahel Bucher, Daniel Veyel, Lothar Willmitzer, Simon Krattinger, Beat Keller, Laurent Biglera
Introduction of durable resistance genes in crops is an important strategy to prevent yield loss caused by pathogens. The durable multi-pathogen resistance gene Lr34 originating from wheat is widely used in breeding, and is functionally transferable to barley and rice. The molecular resistance mechanism of Lr34, encoding for an adenosine triphosphate-binding cassette transporter, is not known yet. To understand the molecular function and the defense response of durable disease resistance in cereals, the metabolic response of Lr34 was investigated in, except for the Lr34 gene, genetically identical lines of barley, rice and wheat...
April 26, 2017: Chimia
https://www.readbyqxmd.com/read/28444586/cereal-phytases-and-their-importance-in-improvement-of-micronutrients-bioavailability
#5
REVIEW
Amit Vashishth, Sewa Ram, Vikas Beniwal
Phytic acid is a main reservoir of phosphorous (P) in plants and contributes to about 80% of the total P in cereal seeds. However, it is well known to possess anti-nutritional behavior. Because it has strong affinity to chelate divalent ions e.g. calcium, magnesium, and especially with iron and zinc. Therefore, it is extremely poor as a dietary source of P. To enhance bio-availability of micronutrients, an enzyme namely phytase is known to hydrolyze phytic acid. Unfortunately, phytase is not produced in the stomach of monogastric animals and humans...
May 2017: 3 Biotech
https://www.readbyqxmd.com/read/28443114/tadir1-2-a-wheat-ortholog-of-lipid-transfer-protein-atdir1-contributes-to-negative-regulation-of-wheat-resistance-against-puccinia-striiformis-f-sp-tritici
#6
Soyed M Ahmed, Peng Liu, Qinghe Xue, Changan Ji, Tuo Qi, Jia Guo, Jun Guo, Zhensheng Kang
Very few LTPs have been shown to act through plasma membrane receptors or to be involved in the hypersensitive response (HR). DIR1, a new type of plant LTP interacts with lipids in vitro, moves to distant tissues during systemic acquired resistance (SAR) and therefore is thought to be involved in long-distance signaling during SAR. However, the exact functions of DIR1 orthologs in cereal species under biotic and abiotic stresses have not been thoroughly defined. In this study, a novel wheat ortholog of the DIR1 gene, TaDIR1-2, was isolated from Suwon11, a Chinese cultivar of wheat and functionally characterized...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28441747/associations-between-diet-and-toenail-arsenic-concentration-among-pregnant-women-in-bangladesh-a-prospective-study
#7
Pi-I D Lin, Sabri Bromage, Md Golam Mostofa, Joseph Allen, Emily Oken, Molly L Kile, David C Christiani
This prospective study evaluated the relationship between long-term dietary habits and total arsenic (As) concentration in toenail clippings in a cohort of 1616 pregnant women in the Bangladeshi administrative regions of Sirajdikhan and Pabna Sadar. Diet was assessed at Gestation Week 28 and at Postpartum Month 1, using a locally-validated dish-based semi-quantitative food-frequency questionnaire. Toenail As concentration was analyzed by microwave-assisted acid digestion and inductively coupled plasma mass spectrometry...
April 23, 2017: Nutrients
https://www.readbyqxmd.com/read/28441038/phytoextraction-of-nitrogen-and-phosphorus-by-crops-grown-in-a-heavily-manured-dark-brown-chernozem-under-contrasting-soil-moisture-conditions
#8
Ikechukwu Agomoh, Xiying Hao, Francis Zvomuya
Repeated uptake of excess nutrients by crops in soils with a long history of manure application may be a viable option for reducing the nutrient levels. In this greenhouse study, we examined the effectiveness of six 40-day cycles of barley, canola, corn, oat, pea, soybean, and triticale, all grown under two moisture regimes (100% and 50% soil field capacity, SFC), at extracting nitrogen (N) and phosphorus (P) from a Dark Brown Chernozem that had received 180 Mg ha(-1) (wet wt.) of beef cattle feedlot manure annually for 38 years...
April 25, 2017: International Journal of Phytoremediation
https://www.readbyqxmd.com/read/28439277/expression-of-pennisetum-glaucum-eukaryotic-translational-initiation-factor-4a-pgeif4a-confers-improved-drought-salinity-and-oxidative-stress-tolerance-in-groundnut
#9
Tata Santosh Rama Bhadra Rao, Juturu Vijaya Naresh, Palakolanu Sudhakar Reddy, Malireddy K Reddy, Garladinne Mallikarjuna
Eukaryotic translational initiation factor 4A belong to family of helicases, involved in multifunctional activities during stress and non-stress conditions. The eIF4A gene was isolated and cloned from semi-arid cereal crop of Pennisetum glaucum. In present study, the PgeIF4A gene was expressed under the regulation of stress inducible Arabidopsis rd29A promoter in groundnut (cv JL-24) with bar as a selectable marker. The de-embryonated cotyledons were infected with Agrobacterium tumefaciens (LBA4404) carrying rd29A:PgeIF4A construct and generated high frequency of multiple shoots in phosphinothricin medium...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28436343/implications-of-feed-concentrate-reduction-in-organic-grassland-based-dairy-systems-a-long-term-on-farm-study
#10
F Leiber, I K Schenk, A Maeschli, S Ivemeyer, J O Zeitz, S Moakes, P Klocke, P Staehli, C Notz, M Walkenhorst
In response to increasing efforts for reducing concentrate inputs to organic dairy production in grassland-rich areas of Europe, a long-term study was conducted, which assessed the impacts of concentrate reductions on cows' performance, health, fertility and average herd age. In total, 42 Swiss commercial organic dairy cattle farms were monitored over 6 years ('Y0', 2008/09 until 'Y5', 2013/14). In comparison with overall data of Swiss herdbooks (including conventional and organic farms), the herds involved in the project had lower milk yields, similar milk solids, shorter calving intervals and higher average lactation numbers...
April 24, 2017: Animal: An International Journal of Animal Bioscience
https://www.readbyqxmd.com/read/28436146/improving-zinc-accumulation-in-barley-endosperm-using-hvmtp1-a-transition-metal-transporter
#11
Paloma Menguer, Thomas Vincent, Anthony J Miller, James K M Brown, Eva Vincze, Søren Borg, Preben Bach Holm, Dale Sanders, Dorina Podar
Zinc (Zn) is essential for all life forms, including humans. It is estimated that around two billion people are deficient in their Zn intake. Human dietary Zn intake relies heavily on plants, which in many developing countries consists mainly of cereals. The inner part of cereal grain, the endosperm, is the part that is eaten after milling but contains only a quarter of the total grain Zn. Here we present results demonstrating that endosperm Zn content can be enhanced through expression of a transporter responsible for vacuolar Zn accumulation in cereals...
April 24, 2017: Plant Biotechnology Journal
https://www.readbyqxmd.com/read/28431149/next-generation-non-starch-polysaccharide-degrading-multi-carbohydrase-complex-rich-in-xylanase-and-arabinofuranosidase-to-enhance-broiler-feed-digestibility
#12
Pierre Cozannet, Michael T Kidd, Roberto Montanhini Neto, Pierre-André Geraert
This study was carried out to evaluate the effect of a multi-carbohydrase complex ( ) rich in xylanase ( ) and arabinofuranosidase ( ) on overall broiler feed digestibility in broilers. Energy utilization and digestibility of dry matter ( ), organic matter ( ), protein, starch, fat, and insoluble and soluble fibers were measured using the mass-balance method. The experiment was carried out on 120 broilers (3-week-old chickens). Broilers were distributed over 8 treatments to evaluate the effect of the dietary arabinoxylan content and nutrient density with and without MCC (Rovabio® Advance)...
April 20, 2017: Poultry Science
https://www.readbyqxmd.com/read/28431134/floral-transitions-in-wheat-and-barley-interactions-between-photoperiod-abiotic-stresses-and-nutrient-status
#13
Leonard Gol, Filipa Tomé, Maria von Korff
The timing of plant reproduction has a large impact on yield in crop plants. Reproductive development in temperate cereals comprises two major developmental transitions. During spikelet initiation, the identity of the shoot meristem switches from the vegetative to the reproductive stage and spikelet primordia are formed on the apex. Subsequently, floral morphogenesis is initiated, a process strongly affected by environmental variation. Recent studies in cereal grasses have suggested that this later phase of inflorescence development controls floret survival and abortion, and is therefore crucial for yield...
April 20, 2017: Journal of Experimental Botany
https://www.readbyqxmd.com/read/28430898/plant-water-stress-affects-interactions-between-an-invasive-and-a-naturalized-aphid-species-on-cereal-crops
#14
N E Foote, T S Davis, D W Crowder, N A Bosque-Pérez, S D Eigenbrode
In cereal cropping systems of the Pacific Northwestern United States (PNW), climate change is projected to increase the frequency of drought during summer months, which could increase water stress for crop plants. Yet, it remains uncertain how interactions between herbivore species are affected by drought stress. Here, interactions between two cereal aphids present in PNW cereal systems, Metopolophium festucae (Theobald) subsp. cerealium (a newly invasive species) and Rhopalosiphum padi L. (a naturalized species), were tested relative to wheat water stress...
April 18, 2017: Environmental Entomology
https://www.readbyqxmd.com/read/28430148/a-rapid-magnetic-solid-phase-extraction-method-followed-by-liquid-chromatography-tandem-mass-spectrometry-analysis-for-the-determination-of-mycotoxins-in-cereals
#15
Giorgia La Barbera, Anna Laura Capriotti, Chiara Cavaliere, Patrizia Foglia, Carmela Maria Montone, Riccardo Zenezini Chiozzi, Aldo Laganà
Mycotoxins can contaminate various food commodities, including cereals. Moreover, mycotoxins of different classes can co-contaminate food, increasing human health risk. Several analytical methods have been published in the literature dealing with mycotoxins determination in cereals. Nevertheless, in the present work, the aim was to propose an easy and effective system for the extraction of six of the main mycotoxins from corn meal and durum wheat flour, i.e., the main four aflatoxins, ochratoxin A, and the mycoestrogen zearalenone...
April 21, 2017: Toxins
https://www.readbyqxmd.com/read/28429993/interactive-effects-of-protein-and-carbohydrates-on-production-of-microbial-metabolites-in-the-large-intestine-of-growing-pigs
#16
Marcin Taciak, Marcin Barszcz, Ewa Święch, Anna Tuśnio, Ilona Bachanek
The study aimed at determining the effect of protein type and indigestible carbohydrates on the concentration of microbial metabolites in the large intestine of pigs. The experiment involved 36 pigs (15 kg initial body weight) divided into six groups, fed cereal-based diets with highly digestible casein (CAS) or potato protein concentrate (PPC) of lower ileal digestibility. Each diet was supplemented with cellulose, raw potato starch or pectin. After 2 weeks of feeding, pigs were sacrificed and samples of caecal and ascending, transverse and descending colon digesta were collected for analyses of microbial metabolites...
June 2017: Archives of Animal Nutrition
https://www.readbyqxmd.com/read/28429922/effect-modification-of-green-tea-on-the-association-between-rice-intake-and-the-risk-of-diabetes-mellitus-a-prospective-study-in-japanese-men-and-women
#17
Akie Hirata, Keizo Ohnaka, Naotaka Tashiro, Zhenjie Wang, Michiko Kohno, Chikako Kiyohara, Suminori Kono, Ryoichi Takayanagi
BACKGROUND AND OBJECTIVES: Recent observational studies have suggested a positive association of white rice and protective associations of green tea and coffee with the risk of diabetes. However, none have examined the interaction between these dietary factors on the risk of diabetes. We prospectively investigated the effect modification of green tea and coffee on the association between rice and incident diabetes in elderly Japanese men and women. METHODS AND STUDY DESIGN: Among subjects who participated in the baseline survey (2004-2007), 11717 (91 %) subjects responded to the follow-up survey (2010-2012)...
May 2017: Asia Pacific Journal of Clinical Nutrition
https://www.readbyqxmd.com/read/28429260/the-dietary-patterns-are-a-modifying-risk-factor-for-breast-cancer-an-ecological-study
#18
L A Radkevich, D A Radkevich
A comparative study of dietary patterns (DPs) with breast cancer (BC) incidence in different countries has been performed. It was established that in the countries with a high incidence of BC (76 per 100 000 people) the levels of consumption of the "nutrients of animal foods," "fruits and beverages," and "alcoholic drinks" are 1.5-2 times higher and that of "cereals and vegetables" is 1.5 times lower than in the countries with a low incidence of BC (35 per 100 000). In Mediterranean countries, where incidence of BC is 51 per 100 000, the levels of consumption of "animal foods" is two times lower than the levels of consumption of "cereals and vegetables...
January 2017: Doklady Biological Sciences: Proceedings of the Academy of Sciences of the USSR, Biological Sciences Sections
https://www.readbyqxmd.com/read/28428794/fine-mapping-of-a-novel-defective-glume-1-dg1-mutant-which-affects-vegetative-and-spikelet-development-in-rice
#19
Haiping Yu, Banpu Ruan, Zhongwei Wang, Deyong Ren, Yu Zhang, Yujia Leng, Dali Zeng, Jiang Hu, Guangheng Zhang, Li Zhu, Zhenyu Gao, Guang Chen, Longbiao Guo, Wenfu Chen, Qian Qian
In cereal crops, vegetative and spikelet development play important roles in grain yield and quality, but the genetic mechanisms that control vegetative and spikelet development remain poorly understood in rice. Here, we identified a new rice mutant, defective glume 1 (dg1) mutant from cultivar Zhonghua11 after ethyl methanesulfonate treatment. The dg1 mutant displayed the dwarfism with small, rolled leaves, which resulted from smaller cells and more bulliform cells. The dg1 mutant also had an enlarged leaf angle and defects in brassinosteroid signaling...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28427843/relative-importance-of-different-exposure-routes-of-heavy-metals-for-humans-living-near-a-municipal-solid-waste-incinerator
#20
Tong Li, Yi Wan, Yujie Ben, Senrong Fan, Jianying Hu
The potential health effects of toxic chemicals (e.g. heavy metals) emitted by municipal solid waste incinerators (MSWIs) are of great concern to local residents, however there have been few studies on the contributions of different exposure pathways and their subsequent effects on the body burden of residents living near MSWIs. In this study, multiple exposure routes of heavy metals including Pb, Cr, Cd and Mn were assessed by investigating the metals in foods (such as vegetables, crops, meats and fruits etc...
April 17, 2017: Environmental Pollution
keyword
keyword
49933
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"