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Cryptic species

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https://www.readbyqxmd.com/read/28931082/barcoding-atlantic-canada-s-mesopelagic-and-upper-bathypelagic-marine-fishes
#1
Ellen L Kenchington, Shauna M Baillie, Trevor J Kenchington, Paul Bentzen
DNA barcode sequences were developed from 557 mesopelagic and upper bathypelagic teleost specimens collected in waters off Atlantic Canada. Confident morphological identifications were available for 366 specimens, of 118 species and 93 genera, which yielded 328 haplotypes. Five of the species were novel to the Barcode of Life Database (BOLD). Most of the 118 species conformed to expectations of monophyly and the presence of a "barcode gap", though some known weaknesses in existing taxonomy were confirmed and a deficiency in published keys was revealed...
2017: PloS One
https://www.readbyqxmd.com/read/28923557/a-molecular-approach-towards-taxonomic-identification-of-elasmobranch-species-from-maltese-fisheries-landings
#2
Adriana Vella, Noel Vella, Sarah Schembri
The mitochondrial genome, through the application of DNA barcoding, provides a powerful tool for identifying species even when specimens are either incomplete or belong to species that exhibit cryptic diversity. In fisheries management accurate identification of whole or part of the specimens landed is a fundamental requirement for the conservation of species affected directly or indirectly by the fisheries activities. In this study cytochrome c oxidase subunit I (COI) and NADH dehydrogenase subunit 2 (ND2) sequences were used to genetically distinguish 36 elasmobranch species collected from Maltese (Central Mediterranean) commercial fisheries landings...
September 8, 2017: Marine Genomics
https://www.readbyqxmd.com/read/28921904/developing-a-dna-barcode-library-for-perciform-fishes-in-the-south-china-sea-species-identification-accuracy-and-cryptic-diversity
#3
Gang Hou, Wei-Tao Chen, Huo-Sheng Lu, Fei Cheng, Song-Guang Xie
DNA barcodes were studied for 1,353 specimens representing 272 morphological species belonging to 149 genera and 55 families of Perciformes from the South China Sea (SCS). The average Kimura 2-parameter (K2P) distances within species, genera, and families were 0.31%, 8.71%, and 14.52%, respectively. A Neighbor-joining (NJ) tree, Bayesian inference (BI) and maximum-likelihood (ML) trees and Automatic Barcode Gap Discovery (ABGD) revealed 260, 253 and 259 single-species-representing clusters, respectively. Barcoding Gap Analysis (BGA) demonstrated that barcode gaps were present for 178 of 187 species analysed with multiple specimens (95...
September 15, 2017: Molecular Ecology Resources
https://www.readbyqxmd.com/read/28919961/the-mugil-curema-species-complex-pisces-mugilidae-a-new-karyotype-for-the-pacific-white-mullet-mitochondrial-lineage
#4
Mauro Nirchio, Claudio Oliveira, Zoila R Siccha-Ramirez, Viviani F de Sene, Luciana Sola, Valentina Milana, Anna Rita Rossi
Recent molecular phylogenetic analyses have shown that the Mugil curema Valenciennes, 1836 species complex includes M. incilis Hancock, 1830, M. thoburni (Jordan & Starks, 1896) and at least four "M. curema" mitochondrial lineages, considered as cryptic species. The cytogenetic data on some representatives of the species complex have shown a high cytogenetic diversity. This research reports the results of cytogenetic and molecular analyses of white mullet collected in Ecuador. The analyzed specimens were molecularly assigned to the Mugil sp...
2017: Comparative Cytogenetics
https://www.readbyqxmd.com/read/28919504/cryptic-elevational-zonation-in-trapdoor-spiders-araneae-antrodiaetidae-aliatypus-janus-complex-from-the-california-southern-sierra-nevada
#5
James Starrett, Cheryl Y Hayashi, Shahan Derkarabetian, Marshal Hedin
The relative roles of ecological niche conservatism versus niche divergence in promoting montane speciation remains an important topic in biogeography. Here, our aim was to test whether lineage diversification in a species complex of trapdoor spiders corresponds with riverine barriers or with an ecological gradient associated with elevational tiering. Aliatypus janus was sampled from throughout its range, with emphasis on populations in the southern Sierra Nevada Mountains of California. We collected multi-locus genetic data to generate a species tree for A...
September 15, 2017: Molecular Phylogenetics and Evolution
https://www.readbyqxmd.com/read/28904784/marine-dock-pilings-foster-diverse-native-cryptobenthic-fish-assemblages-across-bioregions
#6
Simon J Brandl, Jordan M Casey, Nancy Knowlton, James Emmett Duffy
Anthropogenic habitats are increasingly prevalent in coastal marine environments. Previous research on sessile epifauna suggests that artificial habitats act as a refuge for nonindigenous species, which results in highly homogenous communities across locations. However, vertebrate assemblages that live in association with artificial habitats are poorly understood. Here, we quantify the biodiversity of small, cryptic (henceforth "cryptobenthic") fishes from marine dock pilings across six locations over 35° of latitude from Maine to Panama...
September 2017: Ecology and Evolution
https://www.readbyqxmd.com/read/28904749/do-you-hear-what-i-see-vocalization-relative-to-visual-detection-rates-of-hawaiian-hoary-bats-lasiurus-cinereus-semotus
#7
Paulo Marcos Gorresen, Paul M Cryan, Kristina Montoya-Aiona, Frank J Bonaccorso
Bats vocalize during flight as part of the sensory modality called echolocation, but very little is known about whether flying bats consistently call. Occasional vocal silence during flight when bats approach prey or conspecifics has been documented for relatively few species and situations. Bats flying alone in clutter-free airspace are not known to forgo vocalization, yet prior observations suggested possible silent behavior in certain, unexpected situations. Determining when, why, and where silent behavior occurs in bats will help evaluate major assumptions of a primary monitoring method for bats used in ecological research, management, and conservation...
September 2017: Ecology and Evolution
https://www.readbyqxmd.com/read/28899345/phylogeographic-structure-cryptic-speciation-and-demographic-history-of-the-sharpbelly-hemiculter-leucisculus-a-freshwater-habitat-generalist-from-southern-china
#8
Weitao Chen, Zaixuan Zhong, Wei Dai, Qi Fan, Shunping He
BACKGROUND: Species with broad distributions frequently divide into multiple genetic forms and may therefore be viewed as "cryptic species". Here, we used the mitochondrial cytochrome b (Cytb) and 12 nuclear DNA loci to investigate phylogeographic structures of the sharpbelly (Hemiculter leucisculus) in rivers in southern China and explored how the geological and climatic factors have shaped the genetic diversity and evolutionary history of this species. RESULTS: Our mitochondrial phylogenetic analysis identified three major lineages (lineages A, B, and C)...
September 12, 2017: BMC Evolutionary Biology
https://www.readbyqxmd.com/read/28894009/trichromacy-increases-fruit-intake-rates-of-wild-capuchins-cebus-capucinus-imitator
#9
Amanda D Melin, Kenneth L Chiou, Emily R Walco, Mackenzie L Bergstrom, Shoji Kawamura, Linda M Fedigan
Intraspecific color vision variation is prevalent among nearly all diurnal monkeys in the neotropics and is seemingly a textbook case of balancing selection acting to maintain genetic polymorphism. Clear foraging advantages to monkeys with trichromatic vision over those with dichromatic "red-green colorblind" vision have been observed in captive studies; however, evidence of trichromatic advantage during close-range foraging has been surprisingly scarce in field studies, perhaps as a result of small sample sizes and strong impacts of environmental or individual variation on foraging performance...
September 11, 2017: Proceedings of the National Academy of Sciences of the United States of America
https://www.readbyqxmd.com/read/28892780/natural-diversity-facilitates-the-discovery-of-conserved-chemotherapeutic-response-mechanisms
#10
REVIEW
Stefan Zdraljevic, Erik C Andersen
Organismal fitness depends on adaptation to complex niches where chemical compounds and pathogens are omnipresent. These stresses can lead to the fixation of alleles in both xenobiotic responses and proliferative signaling pathways that promote survival in these niches. However, both xenobiotic responses and proliferative pathways vary within and among species. For example, genetic differences can accumulate within populations because xenobiotic exposures are not constant and selection is variable. Additionally, neutral genetic variation can accumulate in conserved proliferative pathway genes because these systems are robust to genetic perturbations given their essential roles in normal cell-fate specification...
September 8, 2017: Current Opinion in Genetics & Development
https://www.readbyqxmd.com/read/28890856/the-semi-aquatic-pondweed-bugs-of-a-cretaceous-swamp
#11
Alba Sánchez-García, André Nel, Antonio Arillo, Mónica M Solórzano Kraemer
Pondweed bugs (Hemiptera: Mesoveliidae), considered a sister group to all other Gerromorpha, are exceedingly rare as fossils. Therefore, each new discovery of a fossil mesoveliid is of high interest, giving new insight into their early evolutionary history and diversity and enabling the testing of their proposed relationships. Here, we report the discovery of new mesoveliid material from Spanish Lower Cretaceous (Albian) amber, which is the first such find in Spanish amber. To date, fossil records of this family only include one species from French Kimmeridgian as compression fossils, two species in French amber (Albian-Cenomanian boundary), and one in Dominican amber (Miocene)...
2017: PeerJ
https://www.readbyqxmd.com/read/28889909/organization-and-evolution-of-mating-type-genes-in-three-stagonosporopsis-species-causing-gummy-stem-blight-of-cucurbits-and-leaf-spot-and-dry-rot-of-papaya
#12
Hao-Xi Li, Thomas M Gottilla, Marin Talbot Brewer
Population divergence and speciation of closely related lineages can result from reproductive differences leading to genetic isolation. An increasing number of fungal diseases of plants and animals have been determined to be caused by morphologically indistinguishable species that are genetically distinct, thereby representing cryptic species. We were interested in identifying if mating systems among three Stagonosporopsis species (S. citrulli, S. cucurbitacearum, and S. caricae) causing gummy stem blight (GSB) of cucurbits or leaf spot and dry rot of papaya differed, possibly underlying species divergence...
October 2017: Fungal Biology
https://www.readbyqxmd.com/read/28888791/a-multilocus-view-on-mediterranean-aeolid-nudibranchs-mollusca-systematics-and-cryptic-diversity-of-flabellinidae-and-piseinotecidae
#13
Giulia Furfaro, Daniele Salvi, Emiliano Mancini, Paolo Mariottini
Recent molecular studies revealed high level of endemism and numerous cryptic species within opisthobranchs, with Mediterranean taxa clearly understudied. Here we used genetic data from both mitochondrial and nuclear gene fragments as well as morphological data from taxonomically relevant characters to investigate the phylogenetic relationships and systematics of Mediterranean taxa of the Flabellinidae and Piseinotecidae families. Phylogenetic analyses based on Bayesian and Maximum-Likelihood methods indicate that Flabellinidae and Pisenotecidae taxa and species within the genera Flabellina, Calmella and Piseinotecus do not form monophyletic clades...
September 6, 2017: Molecular Phylogenetics and Evolution
https://www.readbyqxmd.com/read/28887534/phylogeographic-studies-of-schizothoracine-fishes-on-the-central-qinghai-tibet-plateau-reveal-the-highest-known-glacial-microrefugia
#14
Yangyang Liang, Dekui He, Yintao Jia, Heying Sun, Yifeng Chen
Pleistocene climatic oscillations have greatly influenced the evolutionary history and distribution pattern of most extant species. However, their effects on species on the Qinghai-Tibet Plateau (QTP) are not well understood. To investigate the effects of past climatic shifts, particularly the Last Glacial Maximum (LGM), on plateau fish, we analysed the phylogeographic structure and demographic history of five closely related taxa of the subfamily Schizothoracinae, a representative endemic taxon of the QTP, from nine endorheic lakes on the central QTP and three peripheral exorheic rivers using the mitochondrial control region (D-loop) sequence and 12 microsatellite (SSR) markers...
September 8, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28882174/molecular-phylogeny-of-anopheles-hyrcanus-group-members-based-on-its2-rdna
#15
Yuan Fang, Wen-Qi Shi, Yi Zhang
BACKGROUND: The Anopheles hyrcanus group includes 25 species, and is widely distributed in the Oriental and Palaearctic regions. Several species within this group are vectors of malaria, lymphatic filariasis and Japanese encephalitis. It is difficult or impossible to identify cryptic species based on their morphological characteristics, with some closely related species of the Hyrcanus Group have similar adult morphological characteristics. Thus, their molecular identification has been an important complementary method to traditional morphological taxonomy...
September 7, 2017: Parasites & Vectors
https://www.readbyqxmd.com/read/28880091/mycolic-acid-containing-bacterium-stimulates-tandem-cyclization-of-polyene-macrolactam-in-a-lake-sediment-derived-rare-actinomycete
#16
Shotaro Hoshino, Masahiro Okada, Takayoshi Awakawa, Shumpei Asamizu, Hiroyasu Onaka, Ikuro Abe
Two novel macrolactams, dracolactams A and B, were identified from a combined-culture of Micromonospora species and a mycolic-acid containing bacterium (MACB). Their structures and stereochemistries were completely assigned, based on spectroscopic analyses and chemical derivatization. Both dracolactams were probably generated from a common macrolactam precursor produced by the Micromonospora species. In this combined-culture system, MACB is likely to activate cryptic oxidase genes in the Micromonospora species and induce the downstream polyene macrolactam cyclization...
September 7, 2017: Organic Letters
https://www.readbyqxmd.com/read/28878988/bias-associated-with-the-detectability-of-the-coral-eating-pest-crown-of-thorns-seastar-and-implications-for-reef-management
#17
Mohsen Kayal, Pauline Bosserelle, Mehdi Adjeroud
Outbreaks of the predator crown-of-thorns seastar (COTS) Acanthaster planci cause widespread coral mortality across the Indo-Pacific. Like many marine invertebrates, COTS is a nocturnal species whose cryptic behaviour during the day can affect its detectability, particularly in structurally complex reef habitats that provide many refuges for benthic creatures. We performed extensive day and night surveys of COTS populations in coral reef habitats showing differing levels of structural complexity and COTS abundance...
August 2017: Royal Society Open Science
https://www.readbyqxmd.com/read/28878964/the-role-of-climatic-and-geological-events-in-generating-diversity-in-ethiopian-grass-frogs-genus-ptychadena
#18
Megan L Smith, Brice P Noonan, Timothy J Colston
Ethiopia is a world biodiversity hotspot and harbours levels of biotic endemism unmatched in the Horn of Africa, largely due to topographic-and thus habitat-complexity, which results from a very active geological and climatic history. Among Ethiopian vertebrate fauna, amphibians harbour the highest levels of endemism, making amphibians a compelling system for the exploration of the impacts of Ethiopia's complex abiotic history on biotic diversification. Grass frogs of the genus Ptychadena are notably diverse in Ethiopia, where they have undergone an evolutionary radiation...
August 2017: Royal Society Open Science
https://www.readbyqxmd.com/read/28877741/morphometric-variability-among-the-species-of-the-sordida-subcomplex-hemiptera-reduviidae-triatominae-evidence-for-differentiation-across-the-distribution-range-of-triatoma-sordida
#19
Julieta Nattero, Romina Valeria Piccinali, Catarina Macedo Lopes, María Laura Hernández, Luciana Abrahan, Patricia Alejandra Lobbia, Claudia Susana Rodríguez, Ana Laura Carbajal de la Fuente
BACKGROUND: The Sordida subcomplex (Triatominae) comprises four species, Triatoma garciabesi, T. guasayana, T. patagonica and T. sordida, which differ in epidemiological importance and adaptations to human environments. Some morphological similarities among species make taxonomic identification, population differentiation and species delimitation controversial. Triatoma garciabesi and T. sordida are the most similar species, having been considered alternatively two and a single species until T...
September 6, 2017: Parasites & Vectors
https://www.readbyqxmd.com/read/28877201/acoustic-differentiation-and-behavioral-response-reveals-cryptic-species-within-buergeria-treefrogs-anura-rhacophoridae-from-taiwan
#20
Ying-Han Wang, Yu-Wei Hsiao, Ko-Huan Lee, Hui-Yun Tseng, Yen-Po Lin, Shohei Komaki, Si-Min Lin
Buergeria japonica is a widely distributed treefrog occurring from Ryukyu Archipelago to Taiwan. Across this wide distributional range, we combined molecular, acoustic, morphological, and behavioral characters to clarify the taxonomic status among these insular populations. Genetic differentiation in mitochondrial sequences indicated an over 16% divergence among two deeply divergent clades: Japanese clade distributes in Ryukyu Archipelago and northwestern drainages of Taiwan, while Taiwanese clade distributes in the remaining drainages on Taiwan...
2017: PloS One
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