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https://www.readbyqxmd.com/read/28813447/the-use-of-high-throughput-small-rna-sequencing-reveals-differentially-expressed-micrornas-in-response-to-aster-yellows-phytoplasma-infection-in-vitis-vinifera-cv-chardonnay
#1
Marius C Snyman, Marie-Chrystine Solofoharivelo, Rose Souza-Richards, Dirk Stephan, Shane Murray, Johan T Burger
Phytoplasmas are cell wall-less plant pathogenic bacteria responsible for major crop losses throughout the world. In grapevine they cause grapevine yellows, a detrimental disease associated with a variety of symptoms. The high economic impact of this disease has sparked considerable interest among researchers to understand molecular mechanisms related to pathogenesis. Increasing evidence exist that a class of small non-coding endogenous RNAs, known as microRNAs (miRNAs), play an important role in post-transcriptional gene regulation during plant development and responses to biotic and abiotic stresses...
2017: PloS One
https://www.readbyqxmd.com/read/28811598/effects-of-contaminants-of-emerging-concern-on-megaselia-scalaris-lowe-diptera-phoridae-and-its-microbial-community
#2
Marcus J Pennington, Jason A Rothman, Michael B Jones, Quinn S McFrederick, Jay Gan, John T Trumble
Drought, rising temperatures, and expanding human populations are increasing water demands. Many countries are extending potable water supplies by irrigating crops with wastewater. Unfortunately, wastewater contains biologically active, long-lived pharmaceuticals, even after treatment. Run-off from farms and wastewater treatment plant overflows contribute high concentrations of pharmaceuticals to the environment. This study assessed the effects of common pharmaceuticals on a cosmopolitan saprophagous insect, Megaselia scalaris (Diptera: Phoridae)...
August 15, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28811017/improved-methodology-for-analysis-of-multiple-phytohormones-using-sequential-magnetic-solid-phase-extraction-coupled-with-liquid-chromatography-tandem-mass-spectrometry
#3
Xiao-Tong Luo, Bao-Dong Cai, Xi Chen, Yu-Qi Feng
Phytohormones are special small molecules that play important role in plant growth and development at trace levels. Quantification of multiple phytohormones will be great helpful for researches about cross-talks that plant hormones regulate the responses of plants against both biotic and abiotic stresses by means of synergistic or antagonistic interactions. In the current study, we developed a method for profiling of phytohormones in one small sample, including indole-3-acetic acid, abscisic acid, jasmonic acid, gibberellins, cytokinins and brassinosteroids...
August 29, 2017: Analytica Chimica Acta
https://www.readbyqxmd.com/read/28808767/identification-and-expression-analysis-of-micrornas-during-ovule-development-in-rice-oryza-sativa-by-deep-sequencing
#4
Ya Wu, Liyu Yang, Meiling Yu, Jianbo Wang
MicroRNA (miRNA) expression profiles during rice ovule development revealed the possible miRNA-mediated regulation between ovule sporophytic tissue and female gametophyte and the involvement of miRNAs in programmed cell death. MiRNAs are 20-24-nucleotide small RNAs that play key roles in the regulation of many growth and developmental processes in plants. Rice ovule development comprises a series of biological events, which are regulated by complex molecular mechanisms. To gain insight into miRNA-mediated regulation of rice ovule development, Illumina sequencing was used to examine the expression of miRNAs from the megaspore mother cell meiosis stage to the fertilized ovule stage...
August 14, 2017: Plant Cell Reports
https://www.readbyqxmd.com/read/28808654/genome-wide-identification-and-transcriptional-expression-analysis-of-cucumber-superoxide-dismutase-sod-family-in-response-to-various-abiotic-stresses
#5
Yong Zhou, Lifang Hu, Hao Wu, Lunwei Jiang, Shiqiang Liu
Superoxide dismutase (SOD) proteins are widely present in the plant kingdom and play important roles in different biological processes. However, little is known about the SOD genes in cucumber. In this study, night SOD genes were identified from cucumber (Cucumis sativus) using bioinformatics-based methods, including 5 Cu/ZnSODs, 3 FeSODs, and 1 MnSOD. Gene structure and motif analysis indicated that most of the SOD genes have relatively conserved exon/intron arrangement and motif composition. Phylogenetic analyses with SODs from cucumber and several other species revealed that these SOD proteins can be traced back to two ancestral SODs before the divergence of monocot and dicot plants...
2017: International Journal of Genomics
https://www.readbyqxmd.com/read/28808380/identification-and-analysis-of-jasmonate-pathway-genes-in-coffea-canephora-robusta-coffee-by-in-silico-approach
#6
Kosaraju Bharathi, H L Sreenath
BACKGROUND: Coffea canephora is the commonly cultivated coffee species in the world along with Coffea arabica. Different pests and pathogens affect the production and quality of the coffee. Jasmonic acid (JA) is a plant hormone which plays an important role in plants growth, development, and defense mechanisms, particularly against insect pests. The key enzymes involved in the production of JA are lipoxygenase, allene oxide synthase, allene oxide cyclase, and 12-oxo-phytodienoic reductase...
July 2017: Pharmacognosy Magazine
https://www.readbyqxmd.com/read/28806739/combined-effects-of-o3-and-uv-radiation-on-secondary-metabolites-and-endogenous-hormones-of-soybean-leaves
#7
Bing Mao, Hong Yin, Yan Wang, Tian-Hong Zhao, Rong-Rong Tian, Wei Wang, Jia-Shu Ye
Enhanced ultraviolet radiation (UV) and elevated tropospheric ozone (O3) may individually cause reductions in the growth and productivity of important agricultural crops. However, research regarding their combined effects on important agricultural crops is still scarce, especially on changes in secondary metabolites and endogenous hormones, which are important protective substances and signal components that control plant responses to environment stresses. In this study, using an experimental setup of open top chambers, we monitored the responses of seed yield per plant, leaf secondary metabolites and leaf endogenous hormones under the stress of elevated O3 and enhanced UV radiation individually, as well as their combined stress...
2017: PloS One
https://www.readbyqxmd.com/read/28805882/plant-array-chip-for-the-germination-and-growth-screening-of-arabidopsis-thaliana
#8
Youn-Hee Park, Nayoung Lee, Giltsu Choi, Je-Kyun Park
A screening process for the germination and growth of seed is generally required for plant research. Such a repetitive screening process is costly and time-consuming, and its bulky setup requires a lot of space. In particular, the control of the variables, such as light, nutrients, hormones and temperature, is difficult due to the limited space for incubation. In addition, small seeds such as Arabidopsis thaliana are difficult to handle as they are hundreds of microns in diameter and require a more precisely controllable screening environment...
August 14, 2017: Lab on a Chip
https://www.readbyqxmd.com/read/28805715/identification-and-analysis-of-mitogen-activated-protein-kinase-mapk-cascades-in-fragaria-vesca
#9
Heying Zhou, Suyue Ren, Yuanfang Han, Qing Zhang, Ling Qin, Yu Xing
Mitogen-activated protein kinase (MAPK) cascades are highly conserved signaling modules in eukaryotes, including yeasts, plants and animals. MAPK cascades are responsible for protein phosphorylation during signal transduction events, and typically consist of three protein kinases: MAPK, MAPK kinase, and MAPK kinase kinase. In this current study, we identified a total of 12 FvMAPK, 7 FvMAPKK, 73 FvMAPKKK, and one FvMAPKKKK genes in the recently published Fragaria vesca genome sequence. This work reported the classification, annotation and phylogenetic evaluation of these genes and an assessment of conserved motifs and the expression profiling of members of the gene family were also analyzed here...
August 13, 2017: International Journal of Molecular Sciences
https://www.readbyqxmd.com/read/28803209/20-hydroxyecdysone-attenuates-cardiac-remodeling-in-spontaneously-hypertensive-rats
#10
Sukanya Phungphong, Anusak Kijtawornrat, Sirinut Chaiduang, Vitoon Saengsirisuwan, Tepmanas Bupha-Intr
BACKGROUND: Ecdysteroids, a group of steroid hormones found in insects and many plants, have been shown to prevent various changes in mammalian tissues after female sex hormone deprivation. PURPOSE: To examine whether an ecdysteroid, 20-hydroxyecdysone (20-HE), exhibits regulatory or protective roles in the cardiovascular system. STUDY DESIGN/METHOD: Blood pressure and cardiac function were evaluated in spontaneously hypertensive rats (SHR) during and after daily treatment with 20-HE for six weeks...
August 9, 2017: Steroids
https://www.readbyqxmd.com/read/28802186/a-l-type-lectin-gene-is-involved-in-the-response-to-hormonal-treatment-and-water-deficit-in-volkamer-lemon
#11
Dayse Drielly Sousa Santana Vieira, Giovanni Emiliani, Paola Bartolini, Alessandra Podda, Mauro Centritto, François Luro, Renata Del Carratore, Raphaël Morillon, Abelmon Gesteira, Biancaelena Maserti
Combination of biotic and abiotic stress is a major challenge for crop and fruit production. Thus, identification of genes involved in cross-response to abiotic and biotic stress is of great importance for breeding superior genotypes. Lectins are glycan-binding proteins with a functions in the developmental processes as well as in the response to biotic and abiotic stress. In this work, a lectin like gene, namely ClLectin1, was characterized in Volkamer lemon and its expression was studied in plants exposed to either water stress, hormonal elicitors (JA, SA, ABA) or wounding to understand whether this gene may have a function in the response to multiple stress combination...
August 1, 2017: Journal of Plant Physiology
https://www.readbyqxmd.com/read/28802165/the-world-according-to-garp-transcription-factors
#12
REVIEW
Alaeddine Safi, Anna Medici, Wojciech Szponarski, Sandrine Ruffel, Benoît Lacombe, Gabriel Krouk
Plant specific GARP transcription factor family (made of ARR-B and G2-like) contains genes with very diverse in planta functions: nutrient sensing, root and shoot development, floral transition, chloroplast development, circadian clock oscillation maintenance, hormonal transport and signaling. In this work we review: first, their structural but distant relationships with MYB transcription factors, second, their role in planta, third, the diversity of their Cis-regulatory elements, fourth, their potential protein partners...
August 10, 2017: Current Opinion in Plant Biology
https://www.readbyqxmd.com/read/28802024/the-cereal-pathogen-fusarium-pseudograminearum-produces-a-new-class-of-active-cytokinins-during-infection
#13
Jens Laurids Sørensen, Aurelie H Benfield, Rasmus Dam Wollenberg, Klaus Westphal, Reinhard Wimmer, Mikkel Rank Nielsen, Kristian Fog Nielsen, Jason Carere, Lorenzo Covarelli, Giovanni Beccari, Jonathan Powell, Takafumi Yamashino, Herbert Kogler, Teis Esben Sondergaard, Donald Max Gardiner
The fungal pathogen Fusarium pseudograminearum causes important diseases of wheat and barley. During a survey of secondary metabolites produced by this fungus, a novel class of cytokinins, herein termed Fusarium cytokinins, was discovered. Cytokinins are known for their growth promoting and anti-senescence activities and the production of a cytokinin mimic by what was once considered a necrotrophic pathogen that promotes cell death and senescence challenges the simple view that this pathogen invades its hosts by employing a barrage of lytic enzymes and toxins...
August 12, 2017: Molecular Plant Pathology
https://www.readbyqxmd.com/read/28798767/in-arabidopsis-thaliana-cadmium-impact-on-the-growth-of-primary-root-by-altering-scr-expression-and-auxin-cytokinin-cross-talk
#14
Leonardo Bruno, Marianna Pacenza, Ivano Forgione, Liam R Lamerton, Maria Greco, Adriana Chiappetta, Maria B Bitonti
Cadmium is one of the most widespread pollutant in both terrestrial and marine environment, and its inhibitory effect on plant growth has been largely demonstrated. However, the molecular mechanisms underlying Cd toxicity in plant and mainly in root, as the first organ sensing soil heavy metals, need to be better investigated. To this aim, in the present work we analyzed the growth and the organization of Arabidopsis thaliana primary root in seedlings exposed to Cd (25 and 50 μM) for 8 days starting from germination...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28798491/phytochromobilin-deficiency-impairs-sugar-metabolism-through-the-regulation-of-cytokinin-and-auxin-signaling-in-tomato-fruits
#15
Ricardo Ernesto Bianchetti, Aline Bertinatto Cruz, Bruna Soares Oliveira, Diego Demarco, Eduardo Purgatto, Lázaro Eustáquio Pereira Peres, Magdalena Rossi, Luciano Freschi
Phytochomes and plant hormones have been emerging as important regulators of fleshy fruit biology and quality traits; however, the relevance of phytochrome-hormonal signaling crosstalk in controlling fruit development and metabolism remains elusive. Here, we show that the deficiency in phytochrome chromophore phytochromobilin (PΦB) biosynthesis inhibits sugar accumulation in tomato (Solanum lycopersicum) fruits by transcriptionally downregulating sink- and starch biosynthesis-related enzymes, such as cell-wall invertases, sucrose transporters and ADP-glucose pyrophosphorylases...
August 10, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28798320/chickpea-fusarium-oxysporum-interaction-transcriptome-reveals-differential-modulation-of-plant-defense-strategies
#16
Medha L Upasani, Bhakti M Limaye, Gayatri S Gurjar, Sunitha M Kasibhatla, Rajendra R Joshi, Narendra Y Kadoo, Vidya S Gupta
Fusarium wilt is one of the major biotic stresses reducing chickpea productivity. The use of wilt-resistant cultivars is the most appropriate means to combat the disease and secure productivity. As a step towards understanding the molecular basis of wilt resistance in chickpea, we investigated the transcriptomes of wilt-susceptible and wilt-resistant cultivars under both Fusarium oxysporum f.sp. ciceri (Foc) challenged and unchallenged conditions. Transcriptome profiling using LongSAGE provided a valuable insight into the molecular interactions between chickpea and Foc, which revealed several known as well as novel genes with differential or unique expression patterns in chickpea contributing to lignification, hormonal homeostasis, plant defense signaling, ROS homeostasis, R-gene mediated defense, etc...
August 10, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28797083/the-transcriptional-response-to-the-olive-fruit-fly-bactrocera-oleae-reveals-extended-differences-between-tolerant-and-susceptible-olive-olea-europaea-l-varieties
#17
Filomena Grasso, Mariangela Coppola, Fabrizio Carbone, Luciana Baldoni, Fiammetta Alagna, Gaetano Perrotta, Antonio J Pérez-Pulido, Antonio Garonna, Paolo Facella, Loretta Daddiego, Loredana Lopez, Alessia Vitiello, Rosa Rao, Giandomenico Corrado
The olive fruit fly Bactrocera oleae (Diptera: Tephritidae) is the most devastating pest of cultivated olive (Olea europaea L.). Intraspecific variation in plant resistance to B. oleae has been described only at phenotypic level. In this work, we used a transcriptomic approach to study the molecular response to the olive fruit fly in two olive cultivars with contrasting level of susceptibility. Using next-generation pyrosequencing, we first generated a catalogue of more than 80,000 sequences expressed in drupes from approximately 700k reads...
2017: PloS One
https://www.readbyqxmd.com/read/28792110/toxicity-of-extracts-from-municipal-wastewater-to-early-life-stages-of-japanese-medaka-oryzias-latipes-to-evaluate-removals-of-micropollutants-by-wastewater-treatment
#18
Nicholas Maya, Calvin Crispo, Victoria McFarland, Deniz Nasuhoglu, Siavash Isazadeh, Viviane Yargeau, Chris D Metcalfe
Treatment of municipal wastewater reduces the concentrations of some pharmaceuticals and personal care products, hormones and drugs of abuse. However, reduced concentrations of these micropollutants in wastewater may not correlate with reduced toxicity, as transformations of micropollutants and/or the formation of disinfection by-products may generate toxic compounds. In this study, we prepared extracts by solid phase extraction of samples collected from wastewater treatment plants (WWTPs) at various stages of treatment and tested these extracts for toxicity to early life stages of Japanese medaka (Oryzias latipes)...
August 9, 2017: Environmental Toxicology and Chemistry
https://www.readbyqxmd.com/read/28791296/metabolomics-and-proteomics-of-brassica-napus-guard-cells-in-response-to-low-co2
#19
Sisi Geng, Bing Yu, Ning Zhu, Craig Dufresne, Sixue Chen
Stomatal guard cell response to various stimuli is an important process that balances plant carbon dioxide (CO2) uptake and water transpiration. Elevated CO2 induces stomatal closure, while low CO2 promotes stomatal opening. The signaling process of elevated CO2 induced stomatal closure has been extensively studied in recent years. However, the mechanism of low CO2 induced stomatal opening is not fully understood. Here we report metabolomic and proteomic responses of Brassica napus guard cells to low CO2 using hyphenated mass spectrometry technologies...
2017: Frontiers in Molecular Biosciences
https://www.readbyqxmd.com/read/28780645/the-mediator-genes-med12-and-med13-control-arabidopsis-root-system-configuration-influencing-sugar-and-auxin-responses
#20
Javier Raya-González, Jesús Salvador López-Bucio, José Carlos Prado-Rodríguez, León Francisco Ruiz-Herrera, Ángel Arturo Guevara-García, José López-Bucio
Arabidopsis med12 and med13 mutants exhibit shoot and root phenotypes related to an altered auxin homeostasis. Sucrose supplementation reactivates both cell division and elongation in primary roots as well as auxin-responsive and stem cell niche gene expression in these mutants. An analysis of primary root growth of WT, med12, aux1-7 and med12 aux1 single and double mutants in response to sucrose and/or N-1-naphthylphthalamic acid (NPA) placed MED12 upstream of auxin transport for the sugar modulation of root growth...
August 5, 2017: Plant Molecular Biology
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