keyword
https://read.qxmd.com/read/33761648/construction-of-a-prognostic-value-model-in-papillary-renal-cell-carcinoma-by-immune-related-genes
#21
JOURNAL ARTICLE
Leilei Wang, Weile Gu, Huijun Ni
Papillary renal cell carcinoma (PRCC) is the second most common type of renal carcinoma following clear cell renal cell carcinoma, and the role of immune-related genes (IRGs) in tumorigenesis and metastasis is evident; its prognostic value in PRCC remains unclear. In this study, we downloaded the gene expression profiles and clinical data of patients with PRCC from The Cancer Genome Atlas (TCGA) database and obtained IRGs from the ImmPort database. A total of 371 differentially expressed IRGs (DEIRGs) were discovered between PRCC and normal kidney tissues...
March 26, 2021: Medicine (Baltimore)
https://read.qxmd.com/read/33528699/sequencing-analysis-of-mrna-profile-in-endothelial-cells-in-response-to-ox-ldl
#22
JOURNAL ARTICLE
Dongmei Su, Li Yi, Lina Guan, Qian Li, Cuige Shi, Xu Ma
The pathogenesis of atherosclerosis (AS) and abnormal endothelial cells apoptosis is a multifactorial biological process. Oxidized low density lipoprotein (ox-LDL) is a critical factor in the formation of AS. However, the exact mechanism is still not clear. Therefore, the aim of this study was to investigate some genes and biological pathways in endothelial cells apoptosis in response to ox-LDL. First, our results has validated that ox-LDL is an effective inducer of endothelial cells apoptosis, then, transcriptome sequencing was used to detect differential expression genes...
June 2021: Biochemical Genetics
https://read.qxmd.com/read/33503546/2-3-7-8-tetrachlorodibenzo-p-dioxin-prompted-differentiation-to-cd4-cd8-cd25-and-cd4-cd8-cd25-tregs-and-altered-expression-of-immune-related-genes-in-the-thymus-of-chicken-embryos
#23
JOURNAL ARTICLE
Min-Kyung Cho, Jae-Gon Park, Hisato Iwata, Eun-Young Kim
The chicken (Gallus gallus), which has three aryl hydrocarbon receptor (AHR) isoforms (ckAHR1, ckAHR2, and ckAHR1β) and two AHR nuclear translocator (ARNT) isoforms (ckARNT1 and ckARNT2), is highly sensitive to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) and can serve as an avian model to gain an understanding of the mechanism underlying dioxin toxicity. To elucidate the mechanism of TCDD-induced immunotoxicity in avian species, we treated chicken embryos in ovo with graded concentrations of TCDD (1.5, 2.5, 3...
March 15, 2021: Ecotoxicology and Environmental Safety
https://read.qxmd.com/read/33401108/transcriptional-response-of-blood-leukocytes-from-turkeys-challenged-with-salmonella-enterica-serovar-typhimurium-uk1
#24
JOURNAL ARTICLE
Melissa S Monson, Bradley L Bearson, Matthew J Sylte, Torey Looft, Susan J Lamont, Shawn M D Bearson
Non-typhoidal Salmonella is one of the most common causes of bacterial foodborne disease and consumption of contaminated poultry products, including turkey, is one source of exposure. Minimizing Salmonella colonization of commercial turkeys could decrease the incidence of Salmonella-associated human foodborne illness. Understanding host responses to these bacteria is critical in developing strategies to minimize colonization and reduce food safety risk. In this study, we evaluated bacterial load and blood leukocyte transcriptomic responses of 3-week-old turkeys challenged with the Salmonella enterica serovar Typhimurium (S...
December 25, 2020: Veterinary Immunology and Immunopathology
https://read.qxmd.com/read/33193575/-nrg1-pip4k2a-and-htr2c-as-potential-candidate-biomarker-genes-for-several-clinical-subphenotypes-of-depression-and-bipolar-disorder
#25
JOURNAL ARTICLE
Anastasia Levchenko, Natalia M Vyalova, Timur Nurgaliev, Ivan V Pozhidaev, German G Simutkin, Nikolay A Bokhan, Svetlana A Ivanova
GSK3B, BDNF, NGF, NRG1, HTR2C, and PIP4K2A play important roles in molecular mechanisms of psychiatric disorders. GSK3B occupies a central position in these molecular mechanisms and is also modulated by psychotropic drugs. BDNF regulates a number of key aspects in neurodevelopment and synaptic plasticity. NGF exerts a trophic action and is implicated in cerebral alterations associated with psychiatric disorders. NRG1 is active in neural development, synaptic plasticity, and neurotransmission. HTR2C is another important psychopharmacological target...
2020: Frontiers in Genetics
https://read.qxmd.com/read/32913543/il13ra2-is-overexpressed-in-malignant-gliomas-and-related-to-clinical-outcome-of-patients
#26
JOURNAL ARTICLE
Jing Zeng, Ji Zhang, Yuan-Zhong Yang, Fang Wang, Hong Jiang, Hua-Dong Chen, Hui-Yu Wu, Ke Sai, Wan-Ming Hu
OBJECTIVE: To study the expression of IL13RA2 in gliomas and to analyze its correlation with clinicopathological/molecular features, immune cell infiltration and prognostic significance. METHODS: mRNA expression data for IL13RA2 were downloaded and analyzed from two open access datasets (TCGA & CGGA). IL13RA2 protein expression was examined by immunohistochemistry. The association between IL13RA2 and important clinicopathological/molecular markers was examined using χ2 and Spearman correlation tests...
2020: American Journal of Translational Research
https://read.qxmd.com/read/32812637/phase-i-trial-of-convection-enhanced-delivery-of-il13ra2-and-epha2-receptor-targeted-cytotoxins-in-dogs-with-spontaneous-intracranial-gliomas
#27
JOURNAL ARTICLE
John H Rossmeisl, Denise Herpai, Mindy Quigley, Thomas E Cecere, John L Robertson, Ralph B D'Agostino, Jonathan Hinckley, Stephen B Tatter, Peter J Dickinson, Waldemar Debinski
BACKGROUND: The interleukin 13 receptor alpha 2 (IL13RA2) and ephrin type-A receptor 2 (EPHA2) receptors are attractive therapeutic targets, being expressed in ~90% of canine and human gliomas, and absent in normal brain. Clinical trials using an earlier generation IL-13 based cytotoxin showed encouraging clinical effects in human glioma, but met with technical barriers associated with the convection enhanced delivery (CED) method. In this study, IL-13 mutant and Ephrin-A1 (EFNA1)-based bacterial cytotoxins targeted to IL13RA2 and EPHA2 receptors, respectively, were administered locoregionally by CED to dogs with intracranial gliomas to evaluate their safety and preliminary efficacy...
August 19, 2020: Neuro-oncology
https://read.qxmd.com/read/32558878/interleukin-13-receptor-subunit-alpha-2-is-a-target-of-progesterone-receptor-and-steroid-receptor-coactivator-1-in-the-mouse-uterus%C3%A2
#28
JOURNAL ARTICLE
Ryan M Marquardt, Kevin Lee, Tae Hoon Kim, Brandon Lee, Francesco J DeMayo, Jae-Wook Jeong
The endometrium, composed of epithelial and stromal cell compartments, is tightly regulated by the ovarian steroid hormones estrogen (E2) and progesterone (P4) during early pregnancy. Through the progesterone receptor (PGR), steroid receptor coactivators, and other transcriptional coregulators, progesterone inhibits E2-induced cell proliferation and induces the differentiation of stromal cells in a process called decidualization to promote endometrial receptivity. Although interleukin-13 receptor subunit alpha-2 (Il13ra2) is expressed in the human and mouse endometrium, its potential role in the steroid hormone regulation of the endometrium has not been thoroughly examined...
October 5, 2020: Biology of Reproduction
https://read.qxmd.com/read/32488176/a-unique-hybrid-characteristic-having-both-pro-and-anti-inflammatory-phenotype-transformed-by-repetitive-low-dose-lipopolysaccharide-in-c8-b4-microglia
#29
JOURNAL ARTICLE
Haruka Mizobuchi, Kazushi Yamamoto, Shoko Tsutsui, Masafumi Yamashita, Yoko Nakata, Hiroyuki Inagawa, Chie Kohchi, Gen-Ichiro Soma
Although lipopolysaccharide (LPS) is regarded as an inducer of inflammation, previous studies have suggested that repetitive low-dose LPS has neuroprotective effects via immunomodulation of microglia, resident macrophages of brain. However, microglia transformed by the stimulus of repetitive low-dose LPS (REPELL-microglia) are not well characterized, whereas microglia transformed by repetitive high-dose LPS are well studied as an endotoxin tolerance model in which the induction of pro-inflammatory molecules is suppressed...
June 2, 2020: Scientific Reports
https://read.qxmd.com/read/31927669/changes-in-global-gene-expression-indicate-disordered-autophagy-apoptosis-and-inflammatory-processes-and-downregulation-of-cytoskeletal-signalling-and-neuronal-development-in-patients-with-niemann-pick-c-disease
#30
JOURNAL ARTICLE
Katarzyna Hetmańczyk-Sawicka, Roksana Iwanicka-Nowicka, Anna Fogtman, Jarosław Cieśla, Paweł Włodarski, Barbara Żyżyńska-Granica, Mirella Filocamo, Andrea Dardis, Paolo Peruzzo, Małgorzata Bednarska-Makaruk, Marta Koblowska, Agnieszka Ługowska
Changes in gene expression profiles were investigated in 23 patients with Niemann-Pick C1 disease (NPC). cDNA expression microarrays with subsequent validation by qRT-PCR were used. Comparison of NPC to control samples revealed upregulation of genes involved in inflammation (MMP3, THBS4), cytokine signalling (MMP3), extracellular matrix degradation (MMP3, CTSK), autophagy and apoptosis (CTSK, GPNMB, PTGIS), immune response (AKR1C3, RCAN2, PTGIS) and processes of neuronal development (RCAN2). Downregulated genes were associated with cytoskeletal signalling (ACTG2, CNN1); inflammation and oxidative stress (CNN1); inhibition of cell proliferation, migration and differentiation; ERK-MAPK pathway (COL4A1, COL4A2, CPA4); cell adhesion (IGFBP7); autophagy and apoptosis (CDH2, IGFBP7, COL4A2); neuronal function and development (CSRP1); and extracellular matrix stability (PLOD2)...
April 2020: Neurogenetics
https://read.qxmd.com/read/31918598/mucosal-gene-transcription-of-ulcerative-colitis-in-endoscopic-remission
#31
JOURNAL ARTICLE
Christian Børde Arkteg, Rasmus Goll, Mona Dixon Gundersen, Endre Anderssen, Christopher Fenton, Jon Florholmen
Aim/Objective: Ulcerative colitis (UC) is a chronic inflammatory bowel disease. In UC, a wide range of criteria are used for disease remission, with few studies investigating the differences between disease remission and normal control groups. This paper compares known inflammatory and healing mediators in the mucosa of UC in clinical remission and normal controls, in order to better describe the remission state. Method: Mucosal biopsies from 72 study participants (48 UC and 24 normal controls) were included from the Advanced Study of Inflammatory Bowel Disease (ASIB Study), Arctic University of Norway, Norway...
February 2020: Scandinavian Journal of Gastroenterology
https://read.qxmd.com/read/31832114/tmt-based-quantitative-proteomics-revealed-follicle-stimulating-hormone-fsh-related-molecular-characterizations-for-potentially-prognostic-assessment-and-personalized-treatment-of-fsh-positive-non-functional-pituitary-adenomas
#32
JOURNAL ARTICLE
Ya Wang, Tingting Cheng, Miaolong Lu, Yun Mu, Biao Li, Xuejun Li, Xianquan Zhan
BACKGROUND: Non-functional pituitary adenoma (NFPA) is highly heterogeneous with different hormone expression subtypes. Of them, follicle-stimulating hormone (FSH)-positive expression is an important subtype of NFPAs. It is well-known that FSH exerted its functions through binding its receptor. However, the expression rate of FSH receptor was significantly higher in aggressive pituitary adenomas. This study aimed to investigate the molecular characteristics of FSH-positive NFPAs for effective stratification of patient, target treatment, prognostic assessment, and personalized treatment of FSH-positive NFPAs...
December 2019: EPMA Journal
https://read.qxmd.com/read/31823484/silencing-of-il13ra2-promotes-partial-epithelial-mesenchymal-transition-in-hepatocellular-carcinoma-via-erk-signaling-pathway-activation
#33
JOURNAL ARTICLE
Mimi Wang, Rongrong Yao, Yanhong Wang
Lack of insight into the mechanisms underlying hepatocellular carcinoma (HCC) metastasis has hindered the development of curative treatments. Overexpression of Interleukin 13 receptor alpha 2 (IL13RA2) has been reported to contribute to invasion and metastasis in several tumors. However, the role of IL13RA2 in HCC remains to be characterized. In this study, we identified that low expression of IL13RA2 is associated with poor survival of patients in HCC, and demonstrated that IL13RA2 knockdown endows HCC cells with invasive potential...
December 11, 2019: FEBS Open Bio
https://read.qxmd.com/read/31745762/transcriptome-sequencing-of-endometrium-revealed-alterations-in-mrnas-and-lncrnas-after-ovarian-stimulation
#34
JOURNAL ARTICLE
Lingxiu Li, Peng Wang, Shan Liu, Xueyan Bai, Binbin Zou, Yuan Li
RESEARCH QUESTION: Using RNA-sequencing analysis, we investigated the relationship between ovarian stimulation and endometrial transcriptome profiles during the window of implantation (WOI) to identify candidate predictive factors for the WOI and to optimize timing for embryo transfer. METHODS: Twelve women with normal basal hormone levels and regular ovulation were randomly assigned into three groups based on sampling time: late-proliferate phase (P group), and receptive phase in natural cycles (LH+7, N group) and stimulated cycles (hCG+7, S group)...
November 19, 2019: Journal of Assisted Reproduction and Genetics
https://read.qxmd.com/read/31607839/five-novel-genes-related-to-the-pathogenesis-and-progression-of-pancreatic-neuroendocrine-tumors-by-bioinformatics-analysis-with-rt-qpcr-verification
#35
JOURNAL ARTICLE
Yu Xiao, Yuemei Yang, Yanfeng Wang, Xiaoou Li, Wenze Wang
Objective: To explore novel related genes and potential biomarkers of pancreatic neuroendocrine tumors (PanNETs). Materials and Methods: Two data sets from ICGC and two from the NCBI GEO database were used to identify the differentially expressed genes (DEGs) in PanNETs. The common DEGs among the four sources were analyzed; furthermore, the relationship of these gene expression patterns with different PanNET grades, their mutation status and corresponding impact on prognosis, the interaction network, and the relationship with three known PanNET genes (ATRX, DAXX, and MEN1) were analyzed by two other GEO data and cBioPortal database...
2019: Frontiers in Neuroscience
https://read.qxmd.com/read/31561550/astrogliosis-releases-pro-oncogenic-chitinase-3-like-1-causing-mapk-signaling-in-glioblastoma
#36
JOURNAL ARTICLE
Julian Wurm, Simon P Behringer, Vidhya M Ravi, Kevin Joseph, Nicolas Neidert, Julian P Maier, Roberto Doria-Medina, Marie Follo, Daniel Delev, Dietmar Pfeifer, Jürgen Beck, Roman Sankowski, Oliver Schnell, Dieter H Heiland
Although reactive astrocytes constitute a major component of the cellular environment in glioblastoma, their function and crosstalk to other components of the environment is still poorly understood. Gene expression analysis of purified astrocytes from both the tumor core and non-infiltrated cortex reveals a tumor-related up-regulation of Chitinase 3-like 1 (CHI3L1), a cytokine which is related to inflammation, extracellular tissue remodeling, and fibrosis. Further, we established and validated a co-culture model to investigate the impact of reactive astrocytes within the tumor microenvironment...
September 26, 2019: Cancers
https://read.qxmd.com/read/31384406/selenium-l-methionine-modulates-radiation-injury-and-duox1-and-duox2-upregulation-in-rat-s-heart-tissues
#37
JOURNAL ARTICLE
Sedighe Kolivand, Peyman Amini, Hana Saffar, Saeed Rezapoor, Masoud Najafi, Elahe Motevaseli, Farzad Nouruzi, Dheyauldeen Shabeeb, Ahmed Eleojo Musa
Introduction: Redox interactions play a key role in radiation injury including heart diseases. In present study, we aimed to detect the possible protective role of selenium-L-methionine on infiltration of immune cells and Duox1&2 upregulation in rat's heart tissues. Methods: In this study, 20 rats were divided into 4 groups (5 rats in each) namely: irradiation; irradiation plus Selenium-L-methionine; control; and Selenium-L-methionine treatment. Irradiation (15 Gy to chest) was performed using a cobalt-60 gamma ray source while 4 mg/kg of selenium-L-methionine was administered intraperitoneally...
2019: Journal of Cardiovascular and Thoracic Research
https://read.qxmd.com/read/31348891/intra-and-inter-cellular-rewiring-of-the-human-colon-during-ulcerative-colitis
#38
JOURNAL ARTICLE
Christopher S Smillie, Moshe Biton, Jose Ordovas-Montanes, Keri M Sullivan, Grace Burgin, Daniel B Graham, Rebecca H Herbst, Noga Rogel, Michal Slyper, Julia Waldman, Malika Sud, Elizabeth Andrews, Gabriella Velonias, Adam L Haber, Karthik Jagadeesh, Sanja Vickovic, Junmei Yao, Christine Stevens, Danielle Dionne, Lan T Nguyen, Alexandra-Chloé Villani, Matan Hofree, Elizabeth A Creasey, Hailiang Huang, Orit Rozenblatt-Rosen, John J Garber, Hamed Khalili, A Nicole Desch, Mark J Daly, Ashwin N Ananthakrishnan, Alex K Shalek, Ramnik J Xavier, Aviv Regev
Genome-wide association studies (GWAS) have revealed risk alleles for ulcerative colitis (UC). To understand their cell type specificities and pathways of action, we generate an atlas of 366,650 cells from the colon mucosa of 18 UC patients and 12 healthy individuals, revealing 51 epithelial, stromal, and immune cell subsets, including BEST4+ enterocytes, microfold-like cells, and IL13RA2+ IL11+ inflammatory fibroblasts, which we associate with resistance to anti-TNF treatment. Inflammatory fibroblasts, inflammatory monocytes, microfold-like cells, and T cells that co-express CD8 and IL-17 expand with disease, forming intercellular interaction hubs...
July 25, 2019: Cell
https://read.qxmd.com/read/31308480/anti-il-13r%C3%AE-2-therapy-promotes-recovery-in-a-murine-model-of-inflammatory-bowel-disease
#39
JOURNAL ARTICLE
Erik P Karmele, Trisha S Pasricha, Thirumalai R Ramalingam, Robert W Thompson, Richard L Gieseck, Kayla J Knilans, Martin Hegen, Mark Farmer, Fang Jin, Aaron Kleinman, David A Hinds, Thiago Almeida Pereira, Rafael de Queiroz Prado, Nan Bing, Lioudmila Tchistiakova, Marion T Kasaian, Thomas A Wynn, Kevin M Vannella
There continues to be a major need for more effective inflammatory bowel disease (IBD) therapies. IL-13Rα2 is a decoy receptor that binds the cytokine IL-13 with high affinity and diminishes its STAT6-mediated effector functions. Previously, we found that IL-13Rα2 was necessary for IBD in mice deficient in the anti-inflammatory cytokine IL-10. Here, we tested for the first time a therapeutic antibody specifically targeting IL-13Rα2. We also used the antibody and Il13ra2-/- mice to dissect the role of IL-13Rα2 in IBD pathogenesis and recovery...
September 2019: Mucosal Immunology
https://read.qxmd.com/read/31290966/il13ra2-is-differentially-regulated-in-papillary-thyroid-carcinoma-vs-follicular-thyroid-carcinoma
#40
JOURNAL ARTICLE
Siao Ting Chong, Khee Ming Tan, Catherine Y L Kok, Shou Ping Guan, Siang Hui Lai, Cindy Lim, Jiancheng Hu, Charles Sturgis, Charis Eng, Paula Y P Lam, Joanne Ngeow
CONTEXT: The interleukin-13 receptor alpha2 (IL13RA2), which is known to be overexpressed in glioblastoma multiforme, plays a role in various cellular processes such as cell migration that may contribute to tumor progression. Studies have attributed IL13RA2 to invasion and metastasis in cancers of the ovary, breast, and pancreas, but the pathological role of IL13RA2 in thyroid cancer is still unclear. OBJECTIVE: This study aims to evaluate IL13RA2 expression in thyroid carcinomas and to examine the role of IL13RA2 in the progression of papillary thyroid carcinoma (PTC)...
November 1, 2019: Journal of Clinical Endocrinology and Metabolism
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