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https://www.readbyqxmd.com/read/27920797/genome-wide-association-study-for-identifying-loci-that-affect-fillet-yield-carcass-and-body-weight-traits-in-rainbow-trout-oncorhynchus-mykiss
#1
Dianelys Gonzalez-Pena, Guangtu Gao, Matthew Baranski, Thomas Moen, Beth M Cleveland, P Brett Kenney, Roger L Vallejo, Yniv Palti, Timothy D Leeds
Fillet yield (FY, %) is an economically-important trait in rainbow trout aquaculture that affects production efficiency. Despite that, FY has received little attention in breeding programs because it is difficult to measure on a large number of fish and cannot be directly measured on breeding candidates. The recent development of a high-density SNP array for rainbow trout has provided the needed tool for studying the underlying genetic architecture of this trait. A genome-wide association study (GWAS) was conducted for FY, body weight at 10 (BW10) and 13 (BW13) months post-hatching, head-off carcass weight (CAR), and fillet weight (FW) in a pedigreed rainbow trout population selectively bred for improved growth performance...
2016: Frontiers in Genetics
https://www.readbyqxmd.com/read/27919539/nanostructured-fusiform-hydroxyapatite-particles-precipitated-from-aquaculture-wastewater
#2
Covadonga Correas, Michael L Gerardo, Alexander M Lord, Michael B Ward, Enrico Andreoli, Andrew R Barron
The present work represents a new approach for the isolation of uniform nano particulate hydroxyapatite (HAp). The chemical characterization of a calcium phosphate product obtained from industrial trout farm aquaculture wastewater by two different routes, washing either with a basic aqueous medium (washNaOH) or followed by a further washing with ethanol (washEtOH), is explored. Characterization of the isolated materials includes morphology studies (SEM and TEM), structural (XRD, electron diffraction), compositional (EDX) and thermogravimetric analysis (TGA)...
December 2, 2016: Chemosphere
https://www.readbyqxmd.com/read/27918999/effect-of-silver-nanoparticles-on-the-metabolic-rate-hematological-response-and-survival-of-juvenile-white-shrimp-litopenaeus-vannamei
#3
Karla Juarez-Moreno, Claudio Humberto Mejía-Ruiz, Fernando Díaz, Horacio Reyna-Verdugo, Ana Denisse Re, Edgar F Vazquez-Felix, Edna Sánchez-Castrejón, Josué D Mota-Morales, Alexey Pestryakov, Nina Bogdanchikova
White spot syndrome virus (WSSV) is highly lethal and contagious in shrimps; its outbreaks causes an economic crisis for aquaculture. Several attempts have been made to treat this disease; however, to date, there is no effective cure. Because of their antimicrobial activities, silver nanoparticles (AgNPs) are the most studied nanomaterial. Although the antiviral properties of AgNPs have been studied, their antiviral effect against viral infection in aquaculture has not been reported. The AgNPs tested herein are coated with polyvinylpyrrolidone (PVP) and possess multiple international certifications for their use in veterinary and human applications...
December 2, 2016: Chemosphere
https://www.readbyqxmd.com/read/27917349/effect-of-acute-salinity-stress-on-ion-homeostasis-na-k-atpase-and-histological-structure-in-sea-cucumber-apostichopus-japonicus
#4
Chenfan Geng, Yi Tian, Yanpeng Shang, Liqiang Wang, Yanan Jiang, Yaqing Chang
BACKGROUND: Sea cucumbers (Apostichopus japonicus) are an imperiled fauna exposed to a variety of environmental condition such as salinity and studies are urgently needed to assess their effects to guide aquaculture efforts. The effects of acute salinity stress on coelomic fluid osmotic pressure, ion concentrations, the activity of Na(+)/K(+)-ATPase in respiratory trees and the histological variations were measured to evaluate the salinity tolerance of sea cucumbers. RESULTS: Significant correlations in osmotic pressure were observed between coelomic fluid and ambient environmental salinity...
2016: SpringerPlus
https://www.readbyqxmd.com/read/27916459/molecular-characterization-of-sdf1-and-cxcr4-in-the-mozambique-tilapia-oreochromis-mossambicus
#5
Jorge Amat-Fernandez, Michael J Hammond, Di Liang, Tianfang Wang, Tomer Ventura, Abigail Elizur, Scott F Cummins
Animal sexual reproduction relies on primordial germ cells (PGCs), the predecessors of the germ cell lineage, giving rise to either spermatogonia or oogonia after the completion of gonadal differentiation. There is limited information on the mechanism of PGC migration leading to the formation of the primordial gonad in Perciform fish. Oreochromis mossambicus, a tilapiine species, was investigated that is a commercially important aquaculture species in many parts of the world while in other areas it has become an invasive pest...
November 21, 2016: Animal Reproduction Science
https://www.readbyqxmd.com/read/27915247/genomic-diversity-of-bacteriophages-infecting-the-fish-pathogen-flavobacterium-psychrophilum
#6
Daniel Castillo, Mathias Middelboe
Bacteriophages infecting the fish pathogen Flavobacterium psychrophilum can potentially be used to prevent and control outbreaks of this bacterium in salmonid aquaculture. However, application of bacteriophages in disease control requires detailed knowledge on their genetic composition. To explore the diversity of F. pyschrophilum bacteriophages we have analyzed the complete genome sequences of 17 phages isolated from two distant geographic areas (Denmark and Chile), including the previously characterized temperate bacteriophage 6H...
December 2, 2016: FEMS Microbiology Letters
https://www.readbyqxmd.com/read/27914997/transcriptomic-profiles-of-striped-snakehead-fish-cells-ssn-1-infected-with-red-spotted-grouper-nervous-necrosis-virus-rgnnv-with-an-emphasis-on-apoptosis-pathway
#7
Wenjie Chen, Lizhu Yi, Shuangshuang Feng, Xiaodan Liu, Muhammad Asim, Yongcan Zhou, Jiangfeng Lan, Sanjie Jiang, Jiagang Tu, Li Lin
Nervous necrosis virus (NNV), the causative agent of viral nervous necrosis (VNN) disease, has caused mass mortality of cultured marine and freshwater fish worldwide, resulting in enormous economic losses in the aquaculture industry. However, the molecular mechanisms underlying the pathogenicity of NNV are still poorly understood. In this study, the transcriptomic profiles of striped snakehead fish (Channa striatus) cells (SSN-1) infected with red-spotted grouper NNV (RGNNV) were investigated using deep RNA sequencing technique...
November 30, 2016: Fish & Shellfish Immunology
https://www.readbyqxmd.com/read/27913897/rainbow-trout-oncorhynchus-mykiss-pro-oxidant-and-genotoxic-responses-following-acute-and-chronic-exposure-to-the-antibiotic-oxytetracycline
#8
Sara Rodrigues, Sara C Antunes, Alberto T Correia, Bruno Nunes
Oxytetracycline (OTC), an antibacterial agent, is extensively used in aquaculture practices all over the world, but also in human and veterinary medicines. Because of its intensive use, low rates of absorption by treated animals, inadequate disposal, and low efficiency of removal in wastewater treatment plants, the potential harmful effects on aquatic organisms are of great concern. This work aimed to assess the effects of this antibiotic in rainbow trout, following both acute and chronic exposures. Catalase (CAT), total glutathione peroxidase (GPx), glutathione reductase (GRed) activities and lipid peroxidation (TBARS levels) were quantified as oxidative stress biomarkers, in gills and liver...
December 2, 2016: Ecotoxicology
https://www.readbyqxmd.com/read/27913275/dietary-fish-oil-replacement-by-linseed-oil-effect-on-growth-nutrient-utilization-tissue-fatty-acid-composition-and-desaturase-gene-expression-in-silver-barb-puntius-gonionotus-fingerlings
#9
Madhusmita Nayak, Ashis Saha, Avinash Pradhan, Mrinal Samanta, Shiba Shankar Giri
Silver barb (Puntius gonionotus) is considered a promising medium carp species for freshwater aquaculture in Asia. This study in silver barb was carried out to evaluate the effects of total or partial substitution of dietary fish oil (FO) with linseed oil (LO) on growth, nutrient utilization, whole-body composition, muscle and liver fatty acid composition. Fish (12.1±0.4g of initial body weight) were fed for 60days with five experimental iso-proteinous, iso-lipidic and iso-caloric diets in which FO (control diet) was replaced by 33...
November 29, 2016: Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology
https://www.readbyqxmd.com/read/27911873/interleukin-8-holds-promise-to-serve-as-a-molecular-adjuvant-in-dna-vaccination-model-against-streptococcus-iniae-infection-in-fish
#10
Erlong Wang, Bo Long, Kaiyu Wang, Jun Wang, Yang He, Xingli Wang, Qian Yang, Tao Liu, Defang Chen, Yi Geng, Xiaoli Huang, Ping Ouyang, Weimin Lai
DNA vaccines had been widely used in animal models against various viral infections, while it was not so convincing for many infectious diseases especially bacterial disease in aquaculture. Interleukin-8(IL-8) as one of the CXC chemokines, its immunological role and adjuvant potential which had been proved in mammals were rarely reported in fish species. In this study, recombination plasmid pcDNA3.1/IL-8(pcIL-8) was conducted and the capacity of IL-8 as molecular adjuvant was explored from several aspects by co-injecting with a DNA vaccine encoding α-enolase(pcENO) against Streptococcus iniae infection in channel catfish...
November 30, 2016: Oncotarget
https://www.readbyqxmd.com/read/27907925/the-reversible-sex-of-gonochoristic-fish-insights-and-consequences
#11
Jean-François Baroiller, Helena D'Cotta
Fish sex reversal is a means to understand sex determination and differentiation, but it is also used to control sex in aquaculture. This review discusses sex reversal in gonochoristic fish, with the coexistence of genetic and environmental influences. The different periods of fish sensitivity to sex reversal treatments are presented with the mechanisms implicated. The old players of sex differentiation are revisited with transcriptome data and loss of function studies following hormone- or temperature-induced sex reversal...
December 2, 2016: Sexual Development: Genetics, Molecular Biology, Evolution, Endocrinology, Embryology, and Pathology of Sex Determination and Differentiation
https://www.readbyqxmd.com/read/27905882/plasticity-in-growth-of-farmed-and-wild-atlantic-salmon-is-the-increased-growth-rate-of-farmed-salmon-caused-by-evolutionary-adaptations-to-the-commercial-diet
#12
Alison Catherine Harvey, Monica Favnebøe Solberg, Eva Troianou, Gary Robert Carvalho, Martin Ian Taylor, Simon Creer, Lise Dyrhovden, Ivar Helge Matre, Kevin Alan Glover
BACKGROUND: Domestication of Atlantic salmon for commercial aquaculture has resulted in farmed salmon displaying substantially higher growth rates than wild salmon under farming conditions. In contrast, growth differences between farmed and wild salmon are much smaller when compared in the wild. The mechanisms underlying this contrast between environments remain largely unknown. It is possible that farmed salmon have adapted to the high-energy pellets developed specifically for aquaculture, contributing to inflated growth differences when fed on this diet...
December 1, 2016: BMC Evolutionary Biology
https://www.readbyqxmd.com/read/27905123/selective-precipitation-reaction-a-novel-diagnostic-test-for-tissue-pathology-in-atlantic-salmon-salmo-salar-infected-with-salmonid-alphavirus-sav3
#13
M Braceland, J Tinsley, D Cockerill, R Bickerdike, M F McLoughlin, P D Eckersall
While investigating biomarkers for infection with salmonid alphavirus (SAV), the cause of pancreas disease (PD), a selective precipitation reaction (SPR) has been discovered in serum which could be an on-farm qualitative test and an in-laboratory quantitative assay for health assessments in aquaculture. Mixing serum from Atlantic salmon, Salmo salar, with SAV infection with a sodium acetate buffer caused a visible precipitation which does not occur with serum from healthy salmon. Proteomic examination of the precipitate has revealed that the components are a mix of muscle proteins, for example enolase and aldolase, along with serum protein such as serotransferrin and complement C9...
November 30, 2016: Journal of Fish Diseases
https://www.readbyqxmd.com/read/27904978/development-and-characterization-of-twelve-microsatellite-markers-for-porphyra-linearis-greville
#14
Elena Varela-Álvarez, Cristina Paulino, Ester A Serrão
The genus Porphyra (and its sister genus Pyropia) contains important red algal species that are cultivated and/or harvested for human consumption, sustaining a billion-dollar aquaculture industry. A vast amount of research has been focused on species of this genus, including studies on genetics and genomics among other areas. Twelve novel microsatellite markers were developed here for Porphyra linearis. Markers were characterized using 32 individuals collected from four natural populations of P. linearis with total heterozygosity varying from 0...
November 30, 2016: Genetica
https://www.readbyqxmd.com/read/27903801/inhibition-of-an-aquatic-rhabdovirus-demonstrates-promise-of-a-broad-spectrum-antiviral-for-use-in-aquaculture
#15
Bethany F Balmer, Rachel L Powers, Ting-Hu Zhang, Jihye Lee, Frederic Vigant, Benhur Lee, Michael E Jung, Maureen K Purcell, Kevin Snekvik, Hector C Aguilar
: Many enveloped viruses cause devastating disease in aquaculture, resulting in significant economic impact. LJ001 is a broad-spectrum antiviral compound that inhibits enveloped viral infections by specifically targeting phospholipids in the lipid bilayer via production of singlet oxygen ((1)O2). This stabilizes positive curvature and decreases membrane fluidity, which inhibits viral-cell membrane fusion during viral entry. Based on previous mammalian studies and the requirement of light for activation of LJ001, we hypothesized that LJ001 may be useful as a preventative and/or therapeutic agent for enveloped viral infections in aquaculture...
November 30, 2016: Journal of Virology
https://www.readbyqxmd.com/read/27901504/evaluation-of-medicinal-plants-and-colloidal-silver-efficiency-against-vibrio-parahaemolyticus-infection-in-litopenaeus-vannamei-cultured-at-low-salinity
#16
María Soledad Morales-Covarrubias, Noemí García-Aguilar, María Del Bolan-Mejía, Ana Carmela Puello-Cruz
In shrimp aquaculture, reduction in the use of synthetic antibiotics is a priority due to the high incidence of resistant bacteria (Vibrio) in the white shrimp Litopenaeus vannamei. An increasing number of studies show bactericidal activity of natural treatments in aquaculture. The effectiveness of neem (Azadirachta indica) and oregano (Lippia berlandieri) aqueous extracts and colloidal silver against V. parahaemolyticus were evaluated in low salinity shrimp culture. Results show that aqueous extracts of oregano and neem each present a minimum inhibitory concentration (MIC) of 62...
November 22, 2016: Diseases of Aquatic Organisms
https://www.readbyqxmd.com/read/27899175/bioaccumulation-of-sediment-bound-dichlorodiphenyltrichloroethane-and-heavy-metals-in-benthic-polychaete-nereis-succinea-from-a-typical-mariculture-zone-in-south-china
#17
Huizhen Li, Fei Wang, Jing You
: Bioaccumulation potential and associated ecological risk of sediment-bound DDT and its metabolites (DDXs) and heavy metals in Hailing Bay, a typical mariculture zone along the southern coast of China, were evaluated. The estuarine sediments were co-polluted by DDXs (120-4882ng/g dry wt.) and heavy metals (292-409mg/kg dry wt.). Both DDXs and metals in sediment were bioavailable to Nereis succinea, although the biota-sediment accumulation factors were less than 1 except for DDE. Significant transformation of DDT in organism was observed and DDE was the main metabolite...
November 26, 2016: Marine Pollution Bulletin
https://www.readbyqxmd.com/read/27899075/thermal-sensitivity-of-growth-indicates-heritable-variation-in-1-year-old-rainbow-trout-oncorhynchus-mykiss
#18
Matti Janhunen, Juha Koskela, Nguyễn Hữu Ninh, Harri Vehviläinen, Heikki Koskinen, Antti Nousiainen, Ngô Phú Thỏa
BACKGROUND: Rainbow trout is an important aquaculture species, which has a worldwide distribution across various production environments. The diverse locations of trout farms involve remarkable variation in environmental factors such as water temperature, which is of major importance for the performance of fish. Thus, robust fish that could thrive under different and suboptimal thermal conditions is a desirable goal for trout breeding. Using a split-family experimental design (40 full-/half-sib groups) for a rainbow trout population derived from the Finnish national breeding program, we studied how two different rearing temperatures (14 and 20 °C) affect feed intake, growth rate and feed conversion ratio in 1-year-old fish...
November 29, 2016: Genetics, Selection, Evolution: GSE
https://www.readbyqxmd.com/read/27898954/proposal-of-a-production-and-management-index-pmi-for-tilapia-farms
#19
A Muniesa, A L Rey-Castaño, I Ruiz-Zarzuela, M Guarín, C Iregui, I de Blas
Tilapia is one of the most important species in aquaculture; however, there is no available index to show the performance of a production unit. It is desirable to assess the productivity using indexes, such as the production and management index for shrimps and the European production efficacy factor for broilers. These indexes are based on data production: growth, survival, and feed conversion of a full production cycle. Taking into account these parameters, we propose a production and management index (PMI) for tilapia that is applicable for a specific period of the production cycle...
November 2016: Journal of Animal Science
https://www.readbyqxmd.com/read/27895630/comparative-functional-genomic-analysis-of-two-vibrio-phages-reveals-complex-metabolic-interactions-with-the-host-cell
#20
Dimitrios Skliros, Panos G Kalatzis, Pantelis Katharios, Emmanouil Flemetakis
Sequencing and annotation was performed for two large double stranded DNA bacteriophages, φGrn1 and φSt2 of the Myoviridae family, considered to be of great interest for phage therapy against Vibrios in aquaculture live feeds. In addition, phage-host metabolic interactions and exploitation was studied by transcript profiling of selected viral and host genes. Comparative genomic analysis with other large Vibrio phages was also performed to establish the presence and location of homing endonucleases highlighting distinct features for both phages...
2016: Frontiers in Microbiology
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