keyword
https://read.qxmd.com/read/38603796/nutrient-deprivation-induces-mouse-embryonic-diapause-mediated-by-gator1-and-tsc2
#21
JOURNAL ARTICLE
Jiajia Ye, Yuting Xu, Qi Ren, Lu Liu, Qiang Sun
Embryonic diapause is a special reproductive phenomenon in mammals that helps embryos to survive various harsh stresses. However, the mechanisms of embryonic diapause induced by the maternal environment is still unclear. Here, we uncovered that nutrient deficiency in uterine fluid was essential for the induction of mouse embryonic diapause, shown by a decreased concentration of arginine, leucine, isoleucine, lysine, glucose and lactate in the uterine fluid of mice suffering from maternal starvation or ovariectomy...
April 1, 2024: Development
https://read.qxmd.com/read/38601784/identification-of-the-thermal-activation-network-in-human-15-lipoxygenase-2-divergence-from-plant-orthologs-and-its-relationship-to-hydrogen-tunneling-activation-barriers
#22
JOURNAL ARTICLE
Amanda Ohler, Paris E Taylor, Jasmine A Bledsoe, Anthony T Iavarone, Nathaniel C Gilbert, Adam R Offenbacher
The oxidation of polyunsaturated fatty acids by lipoxygenases (LOXs) is initiated by a C-H cleavage step in which the hydrogen atom is transferred quantum mechanically (i.e., via tunneling). In these reactions, protein thermal motions facilitate the conversion of ground-state enzyme-substrate complexes to tunneling-ready configurations and are thus important for transferring energy from the solvent to the active site for the activation of catalysis. In this report, we employed temperature-dependent hydrogen-deuterium exchange mass spectrometry (TDHDX-MS) to identify catalytically linked, thermally activated peptides in a representative animal LOX, human epithelial 15-LOX-2...
April 5, 2024: ACS Catalysis
https://read.qxmd.com/read/38598436/structural-bioinformatics-studies-of-glutamate-transporters-and-their-alphafold2-predicted-water-soluble-qty-variants-and-uncovering-the-natural-mutations-of-l-q-i-t-f-y-and-q-l-t-i-and-y-f
#23
JOURNAL ARTICLE
Alper Karagöl, Taner Karagöl, Eva Smorodina, Shuguang Zhang
Glutamate transporters play key roles in nervous physiology by modulating excitatory neurotransmitter levels, when malfunctioning, involving in a wide range of neurological and physiological disorders. However, integral transmembrane proteins including the glutamate transporters remain notoriously difficult to study, due to their localization within the cell membrane. Here we present the structural bioinformatics studies of glutamate transporters and their water-soluble variants generated through QTY-code, a protein design strategy based on systematic amino acid substitutions...
2024: PloS One
https://read.qxmd.com/read/38598422/chemoenzymatic-synthesis-of-4-5-dihydroxyisoleucine-fragment-of-%C3%AE-amanitin
#24
JOURNAL ARTICLE
Tsung-Han Chao, Hans Renata
The ability of α-amanitin to potently inhibit RNA polymerase II (RNAP II) has elicited further research into its use as a novel payload for antibody-drug conjugates. Despite this promise, the de novo synthesis of α-amanitin is still a major challenge as it possesses an unusual bicyclic octapeptide structure that contains several oxidized amino acids, most notably 4,5-dihydroxy-l-isoleucine. Here, we report a concise chemoenzymatic synthesis of this key amino acid residue, which features two regioselective and diastereoselective enzymatic C-H oxidations on l-isoleucine...
April 10, 2024: Organic Letters
https://read.qxmd.com/read/38596652/aflailvb-g-i-and-aflailvd-are-involved-in-mycelial-production-aflatoxin-biosynthesis-and-fungal-virulence-in-aspergillus-flavus
#25
JOURNAL ARTICLE
Yarong Zhao, Chulan Huang, Rui Zeng, Peirong Chen, Kaihang Xu, Xiaomei Huang, Xu Wang
Aflatoxins (AFs) are produced by fungi such as Aspergillus flavus and A. parasiticus and are one of the most toxic mycotoxins found in agricultural products and food. Aflatoxin contamination, which requires the control of A. flavus , remains problematic because of the lack of effective strategies and the exploration of new compounds that can inhibit A. flavus growth and mycotoxin production is urgently required to alleviate potential deleterious effects. Acetohydroxy acid synthase (AHAS) and dihydroxy acid dehydratase are important enzymes in the biosynthetic pathways of branched-chain amino acids (BCAAs), including isoleucine, leucine, and valine...
2024: Frontiers in Cellular and Infection Microbiology
https://read.qxmd.com/read/38593545/proteomic-analyses-on-chicken-breast-meat-with-white-striping-myopathy
#26
JOURNAL ARTICLE
Byungwhi Kong, Casey Owens, Walter Bottje, Majid Shakeri, Janghan Choi, Hong Zhuang, Brian Bowker
White striping (WS) is an emerging myopathy that results in significant economic losses as high as $1 billion (combined with losses derived from other breast myopathies including woody breast and spaghetti meat) to the global poultry industry. White striping is detected as the occurrence of white lines on raw poultry meat. The exact etiologies for WS are still unclear. Proteomic analyses of co-expressed WS and woody breast phenotypes previously demonstrated dysfunctions in carbohydrate metabolism, protein synthesis, and calcium buffering capabilities in muscle cells...
March 22, 2024: Poultry Science
https://read.qxmd.com/read/38590561/transcriptome-and-proteome-analyses-reveal-that-upregulation-of-gstm2-by-allisartan-improves-cardiac-remodeling-and-dysfunction-in-hypertensive-rats
#27
JOURNAL ARTICLE
Hao Wu, Yajun Zhai, Jing Yu, Liping Wei, Xin Qi
Long-term hypertension can lead to hypertensive heart disease, which ultimately progresses to heart failure. As an angiotensin receptor blocker antihypertensive drug, allisartan can control blood pressure, and improve cardiac remodeling and cardiac dysfunction caused by hypertension. The aim of the present study was to investigate the protective effects of allisartan on the heart of spontaneously hypertensive rats (SHRs) and the underlying mechanisms. SHRs were used as an animal model of hypertensive heart disease and were treated with allisartan orally at a dose of 25 mg/kg/day...
May 2024: Experimental and Therapeutic Medicine
https://read.qxmd.com/read/38585213/safety-and-efficacy-of-a-feed-additive-consisting-of-l-isoleucine-produced-with-corynebacterium-glutamicum-%C3%A2-cgmcc-20437-for-all-animal-species-eppen-europe-sas
#28
JOURNAL ARTICLE
Vasileios Bampidis, Giovanna Azimonti, Maria de Lourdes Bastos, Henrik Christensen, Mojca Durjava, Birgit Dusemund, Maryline Kouba, Marta López-Alonso, Secundino López Puente, Francesca Marcon, Baltasar Mayo, Alena Pechová, Mariana Petkova, Fernando Ramos, Roberto Edoardo Villa, Ruud Woutersen, Anna Dioni, Joana Firmino, Matteo Innocenti, Jordi Tarrés-Call
Following a request from the European Commission, EFSA was asked to deliver a scientific opinion on the safety and efficacy of l-isoleucine produced by fermentation with Corynebacterium glutamicum CGMCC 20437 as a nutritional feed additive for use in feed and in water for drinking for all animal species. The production strain is non-genetically modified, qualifies for the QPS approach to safety assessment when used for production purposes, is susceptible to the relevant antibiotics and contains no antimicrobial resistance genes of concern...
April 2024: EFSA journal
https://read.qxmd.com/read/38581931/omics-analysis-unveils-changes-in-the-metabolome-and-lipidome-of-caenorhabditis-elegans-upon-polydopamine-exposure
#29
JOURNAL ARTICLE
Bao Tan Nguyen, Quoc-Viet Le, Jeongjun Ahn, Ky Anh Nguyen, Huy Truong Nguyen, Jong Seong Kang, Nguyen Phuoc Long, Hyung Min Kim
Polydopamine (PDA) is an insoluble biopolymer with a dark brown-black color that forms through the autoxidation of dopamine. Because of its outstanding biocompatibility and durability, PDA holds enormous promise for various applications, both in the biomedical and non-medical domains. To ensure human safety, protect health, and minimize environmental impacts, the assessment of PDA toxicity is important. In this study, metabolomics and lipidomics assessed the impact of acute PDA exposure on Caenorhabditis elegans (C...
April 1, 2024: Journal of Pharmaceutical and Biomedical Analysis
https://read.qxmd.com/read/38581348/bcat2-mediated-branched-chain-amino-acid-catabolism-is-linked-to-the-aggravated-inflammation-in-obese-with-psoriasis-mice
#30
JOURNAL ARTICLE
Yazhuo Wang, Ning Zhao, Yujiao Meng, Jia Chen, Cong Qi, Xueqing Hu, Haoyue Zhu, Danyang Yang, Xiawei Zhang, Huike Ma, Jingxia Zhao, Tingting Di, Ping Li, Yan Wang
SCOPE: The global prevalence of obesity has significantly increased, presenting a major health challenge. High-fat diet (HFD)-induced obesity is closely related to the disease severity of psoriasis, but the mechanism is not fully understood. METHODS AND RESULTS: The study utilizes the HFD-induced obesity model along with an imiquimod (IMQ)-induced psoriasis-like mouse model (HFD-IMQ) to conduct transcriptomics and metabolomic analyses. HFD-induced obese mice exhibits more severe psoriasis-like lesions compared to normal diet (ND)-IMQ mice...
April 6, 2024: Molecular Nutrition & Food Research
https://read.qxmd.com/read/38580055/effect-of-wq-3334-on-campylobacter-jejuni-carrying-a-dna-gyrase-with-dominant-amino-acid-substitutions-conferring-quinolone-resistance
#31
JOURNAL ARTICLE
Nami Miura-Ajima, Pondpan Suwanthada, Siriporn Kongsoi, Hyun Kim, Ruttana Pachanon, Kentaro Koide, Shigetarou Mori, Jeewan Thapa, Chie Nakajima, Yasuhiko Suzuki
INTRODUCTION: Campylobacteriosis stands as one of the most frequent bacterial gastroenteritis worldwide necessitating antibiotic treatment in severe cases and the rise of quinolones-resistant Campylobacter jejuni poses a significant challenge. The predominant mechanism of quinolones-resistance in this bacterium involves point mutations in the gyrA, resulting in amino acid substitution from threonine to isoleucine at 86th position, representing more than 90% of mutant DNA gyrase, and aspartic acid to asparagine at 90th position...
April 3, 2024: Journal of Infection and Chemotherapy: Official Journal of the Japan Society of Chemotherapy
https://read.qxmd.com/read/38578370/variability-in-genome-size-of-trigonella-foenum-graecum-trigonella-corniculata-and-trigonella-caerulea-as-estimated-by-flow-cytometry-indicates-complex-evolutionary-history-of-fenugreek
#32
JOURNAL ARTICLE
Sheel Yadav, Ratna Kumari, Parimalan Rangan, Ambika Baldev Gaikwad
BACKGROUND: The determination of genome size is a fundamental step which provides a basis to initiate studies aimed at deciphering the genetic similarity of a species and to carry out other genomics based investigations. Fenugreek (Trigonella spp.) is an important spice crop which has numerous health promoting phytochemicals. Many species within this genus are known for their various health benefits owing to the presence of a wide diversity of important phytochemicals like diosgenin, trigonelline, fenugreekine, galactomannan, 4-hydroxy isoleucine, etc...
April 5, 2024: Molecular Biology Reports
https://read.qxmd.com/read/38577032/structural-bioinformatics-studies-of-six-human-abc-transporters-and-their-alphafold2-predicted-water-soluble-qty-variants
#33
JOURNAL ARTICLE
Emily Pan, Fei Tao, Eva Smorodina, Shuguang Zhang
Human ATP-binding cassette (ABC) transporters are one of the largest families of membrane proteins and perform diverse functions. Many of them are associated with multidrug resistance that often results in cancer treatment with poor outcomes. Here, we present the structural bioinformatics study of six human ABC membrane transporters with experimentally determined cryo-electron microscopy (CryoEM) structures including ABCB7, ABCC8, ABCD1, ABCD4, ABCG1, ABCG5, and their AlphaFold2-predicted water-soluble QTY variants...
2024: QRB discovery
https://read.qxmd.com/read/38576560/transcriptomics-and-metabonomics-study-on-the-effect-of-exercise-combined-with-curcumin-supplementation-on-breast-cancer-in-mice
#34
JOURNAL ARTICLE
Yong Guo, Jinxing Su, Shangquan Jiang, Yan Xu, Binbin Dou, Ting Li, Jiabin Zhu, Kan He
Curcumin and exercise have been reported to show good anti-tumour effects. However, relevant research on the combined effects of physical exercise and curcumin supplementation on cancer and the underlying mechanisms is still lacking. The current study aimed to construct an anti-breast tumour mouse model using the combined effects of curcumin treatment and swimming exercise. Transcriptomic and metabolomic techniques were used to screen for differentially expressed genes and metabolites, evaluate the anticancer effects, and analyse the molecular regulatory mechanisms related to metabolism...
April 15, 2024: Heliyon
https://read.qxmd.com/read/38569413/efficient-biotransformation-of-naringenin-to-naringenin-%C3%AE-glucoside-a-novel-%C3%AE-glucosidase-inhibitor-by-amylosucrase-from-deinococcus-wulumuquiensis
#35
JOURNAL ARTICLE
Su-Jeong Yu, Yun-Sang So, Changjin Lim, Chi Heung Cho, Sang-Gil Lee, Sang-Ho Yoo, Cheon-Seok Park, Byung-Hoo Lee, Kyung Hyun Min, Dong-Ho Seo
Amylosucrase (ASase) efficiently biosynthesizes α-glucoside using flavonoids as acceptor molecules and sucrose as a donor molecule. Here, ASase from Deinococcus wulumuqiensis (DwAS) biosynthesized more naringenin α-glucoside (NαG) with sucrose and naringenin as donor and acceptor molecules, respectively, than other ASases from Deinococcus sp. The biotransformation rate of DwAS to NαG was 21.3% compared to 7.1-16.2% for other ASases. Docking simulations showed that the active site of DwAS was more accessible to naringenin than those of others...
March 30, 2024: Food Chemistry
https://read.qxmd.com/read/38569082/natural-amino-acid-bearing-carbamate-prodrugs-of-daidzein-increase-water-solubility-and-improve-phase-ii-metabolic-stability-for-enhanced-oral-bioavailability
#36
JOURNAL ARTICLE
Yingchao Li, Xiaoyu Liu, Farong Lu, Huichao Li, Jiaming Zhang, Yawei Zhang, Wenchao Li, Weiping Wang, Miaomiao Yang, Zhining Ma, Hui Zhang, Xiaomian Zhou, Youjun Xu, Zhonggui He, Jin Sun, Tianhong Zhang, Qikun Jiang
Daidzein (DAN) is an isoflavone, and it is often found in its natural form in soybean and food supplements. DAN has poor bioavailability owing to its extremely low water solubility and first-pass metabolism. Herein, we hypothesized that a bioactivatable natural amino acid-bearing carbamate prodrug strategy could increase the water solubility and metabolic stability of DAN. To test our hypothesis, nine amino acid prodrugs of DAN were designed and synthesized. Compared with DAN, the optimal prodrug (daidzein-4'- O -CO- N -isoleucine, D-4'-I) demonstrated enhanced water solubility and improved phase II metabolic stability and activation to DAN in plasma...
April 3, 2024: Journal of Agricultural and Food Chemistry
https://read.qxmd.com/read/38568835/enhanced-protein-metabolite-correlation-analysis-to-investigate-the-association-between-staphylococcus-aureus-mastitis-and-metabolic-immune-pathways
#37
JOURNAL ARTICLE
Kuo Chen, Binhong Hu, Jingyuan Ren, Xin Deng, Qing Li, Rong Zhang, Yuanyuan Zhang, Gengyu Shen, Songqing Liu, Jiacheng Zhang, Pengwei Lu
Mastitis is a disease characterized by congestion, swelling, and inflammation of the mammary gland and usually caused by infection with pathogenic microorganisms. Furthermore, the development of mastitis is closely linked to the exogenous pathway of the gastrointestinal tract. However, the regulatory mechanisms governing the gut-metabolism-mammary axis remain incompletely understood. The present study revealed alterations in the gut microbiota of mastitis rats characterized by an increased abundance of the Proteobacteria phylum...
April 15, 2024: FASEB Journal: Official Publication of the Federation of American Societies for Experimental Biology
https://read.qxmd.com/read/38568327/metabolomic-profiling-of-maternal-plasma-identifies-inverse-associations-of-acetate-and-urea-with-anti-sars-cov-2-antibody-titers-following-covid-19-vaccination-during-pregnancy
#38
JOURNAL ARTICLE
An-Shine Chao, Chiao-Yun Lin, Meng-Han Chiang, Kuan-Ying Lu, Cheng-Kun Tsai, Kuan-Ju Chen, Chih-Wei Chien, Ting-Shu Wu, Yao-Lung Chang, Angel Chao, Gigin Lin, Chih-Yung Chiu
We conducted a comprehensive metabolomic analysis of plasma samples obtained from pregnant women who displayed varying post-vaccination antibody titers after receiving mRNA-1273-SARS-CoV-2 vaccines. The study involved 62 pregnant women, all of whom had been vaccinated after reaching 24 weeks of gestation. To quantify post-vaccination plasma antibody titers, we employed binding antibody units (BAU) in accordance with the World Health Organization International Standard. Subsequently, we classified the study participants into three distinct BAU/mL categories: those with high titers (above 2000), medium titers (ranging from 1000 to 2000), and low titers (below 1000)...
April 3, 2024: Journal of Molecular Medicine: Official Organ of the "Gesellschaft Deutscher Naturforscher und Ärzte"
https://read.qxmd.com/read/38567076/the-effects-of-food-provisioning-on-the-gut-microbiota-community-and-antibiotic-resistance-genes-of-yunnan-snub-nosed-monkey
#39
JOURNAL ARTICLE
Lei Li, Shan Jing, Yun Tang, Dayong Li, Mingsen Qin
Yunnan snub-nosed monkeys ( Rhinopithecus bieti ) are the highest elevation lived non-human primate, and their survival has been threatened for decades. To promote their population growth, a reserve provides a typical monkey population with supplemental food. However, the influences of this food provisioning on their gut microbiota and antibiotic resistance genes (ARGs) were unknown. Therefore, we investigated the gut microbiota and ARGs of the food-provisioned monkey population compared with another wild foraging population...
2024: Frontiers in Microbiology
https://read.qxmd.com/read/38565013/oxidation-of-branched-chain-amino-acids-by-hocl-kinetics-and-mechanism
#40
JOURNAL ARTICLE
Fruzsina Simon, István Fábián, Mária Szabó
The kinetics of the chlorination of leucine, isoleucine, and valine (BCAAs) was studied in excess HOCl by stopped-flow and spectrophotometric methods (25 ◦ C, I = 1.0 M NaClO4 ). The intermediates and products were identified and monitored by 1 H NMR spectroscopy. It was established that these reactions are fully analogous and proceed according to distinct mechanisms under alkaline and neutral conditions. At high pH, the formation and subsequent rate determining decomposition of N-monochloroamino acid control the process...
March 28, 2024: Journal of Hazardous Materials
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