keyword
MENU ▼
Read by QxMD icon Read
search

Parallel evolution

keyword
https://www.readbyqxmd.com/read/28815540/long-noncoding-rnas-in-mammalian-development-and-diseases
#1
Parna Saha, Shreekant Verma, Rashmi U Pathak, Rakesh K Mishra
Following analysis of sequenced genomes and transcriptome of many eukaryotes, it is evident that virtually all protein-coding genes have already been discovered. These advances have highlighted an intriguing paradox whereby the relative amount of protein-coding sequences remain constant but nonprotein-coding sequences increase consistently in parallel to increasing evolutionary complexity. It is established that differences between species map to nonprotein-coding regions of the genome that surprisingly is transcribed extensively...
2017: Advances in Experimental Medicine and Biology
https://www.readbyqxmd.com/read/28814073/multi-electron-effects-in-the-strong-field-sequential-ionization-of-aligned-ch3i-molecules
#2
Sizuo Luo, Wenhui Hu, Jiaqi Yu, Xiaokai Li, Lanhai He, Chuncheng Wang, Fuchun Liu, Dajun Ding
Strong field sequential ionization of symmetric-top CH3I molecules is studied experimentally by using a combined method of femtosecond laser induced impulsive alignment and time-of-flight mass spectrometry. Both alignment and angular dependent ion yields have been measured and the sequential ionization of multi-electron has been discussed. It's find that the maximum ionization happens when the polarization of probe laser is perpendicular to the internuclear axis of molecules, and the signal of fragment ions peaks at the polarization of probe laser is parallel to the internuclear axis of molecules...
August 16, 2017: Journal of Physical Chemistry. A
https://www.readbyqxmd.com/read/28812721/predicting-evolution
#3
Michael Lässig, Ville Mustonen, Aleksandra M Walczak
The face of evolutionary biology is changing: from reconstructing and analysing the past to predicting future evolutionary processes. Recent developments include prediction of reproducible patterns in parallel evolution experiments, forecasting the future of individual populations using data from their past, and controlled manipulation of evolutionary dynamics. Here we undertake a synthesis of central concepts for evolutionary predictions, based on examples of microbial and viral systems, cancer cell populations, and immune receptor repertoires...
February 21, 2017: Nature ecology & evolution
https://www.readbyqxmd.com/read/28812668/evolutionary-transitions-towards-eusociality-in-snapping-shrimps
#4
Solomon Tin Chi Chak, J Emmett Duffy, Kristin M Hultgren, Dustin R Rubenstein
Animal social organization varies from complex societies where reproduction is dominated by a single individual (eusociality) to those where reproduction is more evenly distributed among group members (communal breeding). Yet, how simple groups transition evolutionarily to more complex societies remains unclear. Competing hypotheses suggest that eusociality and communal breeding are alternative evolutionary endpoints, or that communal breeding is an intermediate stage in the transition towards eusociality. We tested these alternative hypotheses in sponge-dwelling shrimps, Synalpheus spp...
March 20, 2017: Nature ecology & evolution
https://www.readbyqxmd.com/read/28812631/contrasting-effects-of-environment-and-genetics-generate-a-continuum-of-parallel-evolution
#5
Yoel E Stuart, Thor Veen, Jesse N Weber, Dieta Hanson, Mark Ravinet, Brian K Lohman, Cole J Thompson, Tania Tasneem, Andrew Doggett, Rebecca Izen, Newaz Ahmed, Rowan D H Barrett, Andrew P Hendry, Catherine L Peichel, Daniel I Bolnick
Parallel evolution of similar traits by independent populations in similar environments is considered strong evidence for adaptation by natural selection. Often, however, replicate populations in similar environments do not all evolve in the same way, thus deviating from any single, predominant outcome of evolution. This variation might arise from non-adaptive, population-specific effects of genetic drift, gene flow or limited genetic variation. Alternatively, these deviations from parallel evolution might also reflect predictable adaptation to cryptic environmental heterogeneity within discrete habitat categories...
May 22, 2017: Nature ecology & evolution
https://www.readbyqxmd.com/read/28811875/ecosystem-size-predicts-eco-morphological-variability-in-a-postglacial-diversification
#6
Hans Recknagel, Oliver E Hooker, Colin E Adams, Kathryn R Elmer
Identifying the processes by which new phenotypes and species emerge has been a long-standing effort in evolutionary biology. Young adaptive radiations provide a model to study patterns of morphological and ecological diversification in environmental context. Here, we use the recent radiation (ca. 12k years old) of the freshwater fish Arctic charr (Salvelinus alpinus) to identify abiotic and biotic environmental factors associated with adaptive morphological variation. Arctic charr are exceptionally diverse, and in postglacial lakes there is strong evidence of repeated parallel evolution of similar morphologies associated with foraging...
August 2017: Ecology and Evolution
https://www.readbyqxmd.com/read/28810709/parallel-evolution-of-sperm-hyper-activation-ca2-channels
#7
Jacob C Cooper, Nitin Phadnis
Sperm hyper-activation is a dramatic change in sperm behavior where mature sperm burst into a final sprint in the race to the egg. The mechanism of sperm hyper-activation in many metazoans, including humans, consists of a jolt of Ca2+ into the sperm flagellum via CatSper ion channels. Surprisingly, all nine CatSper genes have been independently lost in several animal lineages. In Drosophila, sperm hyper-activation is performed through the cooption of the polycystic kidney disease 2 (pkd2) Ca2+ channel. The parallels between CatSpers in primates and pkd2 in Drosophila provide a unique opportunity to examine the molecular evolution of the sperm hyper-activation machinery in two independent, nonhomologous calcium channels separated by > 500 million years of divergence...
July 1, 2017: Genome Biology and Evolution
https://www.readbyqxmd.com/read/28810228/evolution-of-molecular-weight-and-fluorescence-of-effluent-organic-matter-efom-during-oxidation-processes-revealed-by-advanced-spectrographic-and-chromatographic-tools
#8
Zhiqiang Chen, Mo Li, Qinxue Wen, Nanqi Ren
Effluent organic matter (EfOM) is an emerging concern to receiving aquatic environment due to its refractory property. The degradation of EfOM in ozonation and other two advanced oxidation processes (AOPs), UV/H2O2 and UV/persulfate (PS), was investigated in this study. Fluorescence spectra coupled with parallel factor analysis (PARAFAC) and two-dimensional correlation gel permeation chromatography (2D-GPC) were used to track the evolution of EfOM during each oxidation process. Results showed that the degradation of EfOM indicated by dissolved organic carbon (DOC), UV254 and fluorescence components, fitted well with pseudo-first-order kinetic model during the oxidation processes...
August 4, 2017: Water Research
https://www.readbyqxmd.com/read/28807934/a-novel-bounding-gait-in-swimming-turtles-implications-for-aquatic-locomotor-diversity
#9
Christopher J Mayerl, Richard W Blob
Turtles are an iconic lineage in studies of animal locomotion, typifying the use of slow, alternating footfalls during walking. Alternating movements of contralateral limbs are also typical during swimming gaits for most freshwater turtles. Here, we report a novel gait in turtles, in which the pleurodire Emydura subglobosa swims using a bounding gait that coordinates bilateral protraction of both forelimbs with bilateral retraction of both hindlimbs. Use of this bounding gait is correlated with increased limb excursion and decreased stride frequency, but not increased velocity when compared to standard swimming strokes...
August 14, 2017: Journal of Experimental Biology
https://www.readbyqxmd.com/read/28805849/topology-of-polymer-chains-under-nanoscale-confinement
#10
Vahid Satarifard, Maziar Heidari, Samaneh Mashaghi, Sander J Tans, Mohammad Reza Ejtehadi, Alireza Mashaghi
Spatial confinement limits the conformational space accessible to biomolecules but the implications for bimolecular topology are not yet known. Folded linear biopolymers can be seen as molecular circuits formed by intramolecular contacts. The pairwise arrangement of intra-chain contacts can be categorized as parallel, series or cross, and has been identified as a topological property. Using molecular dynamics simulations, we determine the contact order distributions and topological circuits of short semi-flexible linear and ring polymer chains with a persistence length of lp under a spherical confinement of radius Rc...
August 14, 2017: Nanoscale
https://www.readbyqxmd.com/read/28805218/electrochemical-de-lithiation-of-silver-ferrite-and-composites-mechanistic-insights-from-ex-situ-in-situ-and-operando-x-ray-techniques
#11
Jessica L Durham, Alexander B Brady, Christina A Cama, David C Bock, Christopher J Pelliccione, Qing Zhang, Mingyuan Ge, Yue Ru Li, Yiman Zhang, Hanfei Yan, Xiaojing Huang, Yong Chu, Esther S Takeuchi, Kenneth J Takeuchi, Amy C Marschilok
The structure of pristine AgFeO2 and phase makeup of Ag0.2FeO1.6 (a one-pot composite comprised of nanocrystalline stoichiometric AgFeO2 and amorphous γ-Fe2O3 phases) was investigated using synchrotron X-ray diffraction. A new stacking-fault model was proposed for AgFeO2 powder synthesized using the co-precipitation method. The lithiation/de-lithiation mechanisms of silver ferrite, AgFeO2 and Ag0.2FeO1.6 were investigated using ex situ, in situ, and operando characterization techniques. An amorphous γ-Fe2O3 component in the Ag0...
August 14, 2017: Physical Chemistry Chemical Physics: PCCP
https://www.readbyqxmd.com/read/28803487/a-mechanism-based-approach-to-management-of-children-with-end-stage-liver-disease
#12
Allah B Haafiz
Due to parallel advances in surgical and acute care disciplines, liver transplantation (LT) has revolutionized the outlook for children with end-stage liver disease (ESLD). Contrary to advances in technical aspects of LT and the peri-operative care, pre-transplant management of ESLD remains quite a formidable challenge. Areas covered: This review provides mechanisms based management strategies to address common complications of ESLD including malnutrition, amended metabolic pathways, gastrointestinal dysfunction, and development of ascites...
August 14, 2017: Expert Review of Gastroenterology & Hepatology
https://www.readbyqxmd.com/read/28800133/adaptive-evolution-of-rhizobial-symbiotic-compatibility-mediated-by-co-evolved-insertion-sequences
#13
Ran Zhao, Li Xue Liu, Yun Zeng Zhang, Jian Jiao, Wen Jing Cui, Biliang Zhang, Xiao Lin Wang, Meng Lin Li, Yi Chen, Zhu Qing Xiong, Wen Xin Chen, Chang Fu Tian
Mutualism between bacteria and eukaryotes has essential roles in the history of life, but the evolution of their compatibility is poorly understood. Here we show that different Sinorhizobium strains can form either nitrogen-fixing nodules or uninfected pseudonodules on certain cultivated soybeans, while being all effective microsymbionts of some wild soybeans. However, a few well-infected nodules can be found on a commercial soybean using inocula containing a mixed pool of Tn5 insertion mutants derived from an incompatible strain...
August 11, 2017: ISME Journal
https://www.readbyqxmd.com/read/28799681/genomic-and-clinical-evidence-uncovers-the-enterohepatic-species-helicobacter-valdiviensis-as-a-potential-human-intestinal-pathogen
#14
Pablo Fresia, Ronald Jara, Rafael Sierra, Ignacio Ferrés, Gonzalo Greif, Gregorio Iraola, Luis Collado
BACKGROUND: Helicobacter valdiviensis is a recently described enterohepatic species isolated from wild bird's fecal samples. Currently, its pathogenic potential and clinical significance are unknown mainly due to the lack of whole-genome sequences to compare with other helicobacters and the absence of specific screenings to determine its prevalence in humans. MATERIALS AND METHODS: The species type strain (WBE14(T) ) was whole-genome-sequenced, and comparative analyses were carried out including the genomes from other Helicobacter species to determine the exact phylogenetic position of H...
August 11, 2017: Helicobacter
https://www.readbyqxmd.com/read/28796217/evolution-parallel-lives
#15
Kevin Padian
No abstract text is available yet for this article.
August 9, 2017: Nature
https://www.readbyqxmd.com/read/28794059/evolution-and-development-of-monocot-stomata
#16
Paula J Rudall, Elisabeth D Chen, Erin Cullen
PREMISE OF THE STUDY: Leaves of monocots are typically linear with parallel venation, though a few taxa have broad leaves. Studies of stomatal patterning and development in monocots required updating in the context of rapidly improving knowledge of both the phylogenetic and development-genetic context of monocots that facilitate studies of character evolution. METHODS: We used an existing microscope-slide collection to obtain data on stomatal structure across all the major monocot clades, including some species with relatively broad leaves...
August 9, 2017: American Journal of Botany
https://www.readbyqxmd.com/read/28789553/rrkm-and-master-equation-kinetic-analysis-of-parallel-addition-reactions-of-isomeric-radical-intermediates-in-hydrocarbon-flames
#17
Pierre M Winter, Michael Rheaume, Andrew L Cooksy
We have calculated the temperature-dependent rate coefficients of the addition reactions of butadien-2-yl (C4H5) and acroylyl (C3H3O) radicals with ethene (C2H4), carbon monoxide (CO), formaldehyde (H2CO), hydrogen cyanide (HCN), and ketene (H2CCO), in order to explore the balance between kinetic and thermodynamic control in these combustion-related reactions. For the C4H5 radical, the 1,3-diene form of the addition products is more stable than the 1,2-diene, but the 1,2-diene form of the radical intermediate is stabilized by an allylic delocalization, which may influence the relative activation energies...
August 7, 2017: Journal of Chemical Physics
https://www.readbyqxmd.com/read/28783058/evolution-of-diagnostic-tests-for-chronic-wasting-disease-a-naturally-occurring-prion-disease-of-cervids
#18
REVIEW
Nicholas J Haley, Jürgen A Richt
Since chronic wasting disease (CWD) was first identified nearly 50 years ago in a captive mule deer herd in the Rocky Mountains of the United States, it has slowly spread across North America through the natural and anthropogenic movement of cervids and their carcasses. As the endemic areas have expanded, so has the need for rapid, sensitive, and cost effective diagnostic tests-especially those which take advantage of samples collected antemortem. Over the past two decades, strategies have evolved from the recognition of microscopic spongiform pathology and associated immunohistochemical staining of the misfolded prion protein to enzyme-linked immunoassays capable of detecting the abnormal prion conformer in postmortem samples...
August 5, 2017: Pathogens
https://www.readbyqxmd.com/read/28782803/genomic-analyses-suggest-parallel-ecological-divergence-in-heliosperma-pusillum-caryophyllaceae
#19
Emiliano Trucchi, Božo Frajman, Thomas H A Haverkamp, Peter Schönswetter, Ovidiu Paun
The mosaic distribution of interbreeding taxa with contrasting ecology and morphology offers an opportunity to study microevolutionary dynamics during ecological divergence. We investigate here the evolutionary history of an alpine and a montane ecotype of Heliosperma pusillum (Caryophyllaceae) in the south-eastern Alps. From six pairs of geographically close populations of the two ecotypes (120 individuals) we obtained a high-coverage restriction site associated DNA sequencing (RADseq) dataset that was used for demographic inference to test the hypothesis of parallel evolution of the two ecotypes...
August 7, 2017: New Phytologist
https://www.readbyqxmd.com/read/28780371/modelling-of-the-dissolution-and-reprecipitation-of-uranium-under-oxidising-conditions-in-the-zone-of-shallow-groundwater-circulation
#20
Ekaterina M Dutova, Aleksei N Nikitenkov, Vitaly D Pokrovskiy, David Banks, Bjørn S Frengstad, Valerii P Parnachev
Generic hydrochemical modelling of a grantoid-groundwater system, using the Russian software "HydroGeo", has been carried out with an emphasis on simulating the accumulation of uranium in the aqueous phase. The baseline model run simulates shallow granitoid aquifers (U content 5 ppm) under conditions broadly representative of southern Norway and southwestern Siberia: i.e. temperature 10 °C, equilibrated with a soil gas partial CO2 pressure (PCO2, open system) of 10(-2.5) atm. and a mildly oxidising redox environment (Eh = +50 mV)...
August 3, 2017: Journal of Environmental Radioactivity
keyword
keyword
4792
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"