keyword
https://read.qxmd.com/read/37842862/whole-genome-sequencing-analysis-in-fetal-structural-anomalies-novel-phenotype-genotype-discoveries
#21
JOURNAL ARTICLE
Q Qi, Y Jiang, X Zhou, Y Lü, R Xiao, J Bai, H Lou, W Sun, Y Lian, N Hao, M Li, J Chang
OBJECTIVES: The identification of structural variants and single nucleotide variants is essential in finding molecular etiologies of monogenic genetic disorders. Whole genome sequencing (WGS) is becoming more widespread in genetic disease diagnosis. However, data on its clinical utility remain limited in prenatal practice. We aimed to expand our understanding of implementing WGS in the genetic diagnosis of fetal structural anomalies. METHODS: We employed trio WGS with a minimum coverage of 40X on the MGI DNBSEQ-T7 platform in a cohort of 17 families with fetuses presenting with aberrations detected by ultrasonography but uninformative findings of standard chromosome microarray analysis (CMA) and exome sequencing (ES) testing...
October 16, 2023: Ultrasound in Obstetrics & Gynecology
https://read.qxmd.com/read/37840469/a-chemo-mechanical-model-of-endoderm-movements-driving-elongation-of-the-amniote-hindgut
#22
JOURNAL ARTICLE
Panagiotis Oikonomou, Helena C Cirne, Nandan L Nerurkar
While mechanical and biochemical descriptions of development are each essential, integration of upstream morphogenic cues with downstream tissue mechanics remains understudied during vertebrate morphogenesis. Here, we developed a two-dimensional chemo-mechanical model to investigate how mechanical properties of the endoderm and transport properties of FGF coordinately regulate avian hindgut morphogenesis. Posterior endoderm cells convert a gradient of FGF ligands into a contractile force gradient, leadingto a force imbalance that drives collective cell movements that elongate the forming hindgut tube...
October 16, 2023: Development
https://read.qxmd.com/read/37794731/the-fuzzy-planar-cell-polarity-protein-fuz-necessary-for-primary-cilium-formation-is-essential-for-pituitary-development
#23
JOURNAL ARTICLE
Emily J Lodge, William B Barrell, Karen J Liu, Cynthia L Andoniadou
The primary cilium is an essential organelle that is important for normal cell signalling during development and homeostasis but its role in pituitary development has not been reported. The primary cilium facilitates signal transduction for multiple pathways, the best-characterised being the SHH pathway, which is known to be necessary for correct pituitary gland development. FUZ is a planar cell polarity (PCP) effector that is essential for normal ciliogenesis, where the primary cilia of Fuz-/- mutants are shorter or non-functional...
October 4, 2023: Journal of Anatomy
https://read.qxmd.com/read/37762545/unveiling-the-significance-of-fgf8-overexpression-in-orchestrating-the-progression-of-ovarian-cancer
#24
JOURNAL ARTICLE
Kumari Binita Chandra, Vikrant Kumar, Swati Ranjan, Abhinav Saini, Anil Kumar Tomar, Jai Bhagwan Sharma, Sandeep R Mathur, Savita Yadav
The asymptomatic nature, high rate of disease recurrence, and resistance to platinum-based chemotherapy highlight the need to identify and characterize novel target molecules for ovarian cancer. Fibroblast growth factor 8 (FGF8) aids in the development and metastasis of ovarian cancer; however, its definite role is not clear. We employed ELISA and IHC to examine the expression of FGF8 in the saliva and tissue samples of epithelial ovarian cancer (EOC) patients and controls. Furthermore, various cell assays were conducted to determine how FGF8 silencing influences ovarian cancer cell survival, adhesion, migration, and invasion to learn more about the functions of FGF8...
September 18, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/37700650/pre-mandibular-pharyngeal-pouches-in-early-non-teleost-fish-embryos
#25
JOURNAL ARTICLE
Agata Horackova, Anna Pospisilova, Jan Stundl, Martin Minarik, David Jandzik, Robert Cerny
The vertebrate pharynx is a key embryonic structure with crucial importance for the metameric organization of the head and face. The pharynx is primarily built upon progressive formation of paired pharyngeal pouches that typically develop in post-oral (mandibular, hyoid and branchial) domains. However, in the early embryos of non-teleost fishes, we have previously identified pharyngeal pouch-like outpocketings also in the pre-oral domain of the cranial endoderm. This pre-oral gut (POG) forms by early pouching of the primitive gut cavity, followed by the sequential formation of typical (post-oral) pharyngeal pouches...
September 13, 2023: Proceedings. Biological Sciences
https://read.qxmd.com/read/37690177/developmental-toxicity-in-early-chicken-embryos-on-exposure-to-an-organophosphorus-flame-retardant-tris-2-chloroisopropyl-phosphate
#26
JOURNAL ARTICLE
Kaori Chigusa, Kazuki Kanda, Hisato Iwata
Tris(2-chloroisopropyl) phosphate (TCIPP) is an organophosphate flame retardant detected in the environment and eggs, feathers, and livers. Early-developmental-stage avian embryos are vulnerable to the toxic effects of chemicals. However, studies on the specific effects of TCIPP on avian embryonic development are limited. We aimed to investigate the toxicity of TCIPP in early chicken embryos using a previously developed shell-less incubation system. Fertilized chicken (Gallus gallus domesticus) eggs (n = 220) were exposed to 50 or 500 nmol TCIPP/(g egg) or dimethyl sulfoxide (DMSO) as a vehicle control on Day 0 of incubation...
September 8, 2023: Ecotoxicology and Environmental Safety
https://read.qxmd.com/read/37665325/self-formation-of-concentric-zones-of-telencephalic-and-ocular-tissues-and-directional-retinal-ganglion-cell-axons
#27
JOURNAL ARTICLE
Wei Liu, Rupendra Shrestha, Albert Lowe, Xusheng Zhang, Ludovic Spaeth
The telencephalon and eye in mammals are originated from adjacent fields at the anterior neural plate. Morphogenesis of these fields generates telencephalon, optic-stalk, optic-disc, and neuroretina along a spatial axis. How these telencephalic and ocular tissues are specified coordinately to ensure directional retinal ganglion cell (RGC) axon growth is unclear. Here, we report self-formation of human telencephalon-eye organoids comprising concentric zones of telencephalic, optic-stalk, optic-disc, and neuroretinal tissues along the center-periphery axis...
September 4, 2023: ELife
https://read.qxmd.com/read/37642135/zbtb16-mediates-a-switch-between-fgf-signalling-regimes-in-the-developing-hindbrain
#28
JOURNAL ARTICLE
Sami A Leino, Sean C J Constable, Andrea Streit, David G Wilkinson
Developing tissues are sequentially patterned by extracellular signals that are turned on and off at specific times. In the zebrafish hindbrain, fibroblast growth factor (Fgf) signalling has different roles at different developmental stages: in the early hindbrain, transient Fgf3 and Fgf8 signalling from rhombomere 4 is required for correct segmentation, whereas later, neuronal Fgf20 expression confines neurogenesis to specific spatial domains within each rhombomere. How the switch between these two signalling regimes is coordinated is not known...
August 28, 2023: Development
https://read.qxmd.com/read/37600656/immune-related-gene-il17ra-as-a-diagnostic-marker-in-osteoporosis
#29
JOURNAL ARTICLE
Ya-Jun Deng, Zhi Li, Bo Wang, Jie Li, Jun Ma, Xiong Xue, Xin Tian, Quan-Cheng Liu, Ying Zhang, Bin Yuan
Objectives: Bone immune disorders are major contributors to osteoporosis development. This study aims to identify potential diagnostic markers and molecular targets for osteoporosis treatment from an immunological perspective. Method: We downloaded dataset GSE56116 from the Gene Expression Omnibus database, and identified differentially expressed genes (DEGs) between normal and osteoporosis groups. Subsequently, differentially expressed immune-related genes (DEIRGs) were identified, and a functional enrichment analysis was performed...
2023: Frontiers in Genetics
https://read.qxmd.com/read/37451010/fibroblast-growth-factor-8-facilitates-cell-cell-communication-in-chondrocytes-via-p38-mapk-signaling
#30
JOURNAL ARTICLE
Xiaoling Cao, Lang Cai, Daimo Guo, Demao Zhang, Xuedong Zhou, Jing Xie
Gap junction intercellular communication (GJIC) is essential for regulating the development of the organism and sustaining the internal environmental homeostasis of multi-cellular tissue. Fibroblast growth factor 8 (FGF8), an indispensable regulator of the skeletal system, is implicated in regulating chondrocyte growth, differentiation, and disease occurrence. However, the influence of FGF8 on GJIC in chondrocytes is not yet known. The study aims to investigate the role of FGF8 on cell-cell communication in chondrocytes and its underlying biomechanism...
July 7, 2023: Tissue & Cell
https://read.qxmd.com/read/37436928/distinct-retinoic-gene-signatures-discriminate-merkel-cell-polyomavirus-positive-from-negative-merkel-cell-carcinoma-cells
#31
JOURNAL ARTICLE
Chiara Mazziotta, Christian Felice Cervellera, Giada Badiale, Ilaria Vitali, Antoine Touzé, Mauro Tognon, Fernanda Martini, John Charles Rotondo
Limited molecular knowledge of Merkel cell polyomavirus (MCPyV)-positive and -negative Merkel cell carcinoma (MCC) subsets (MCCP/MCCN) has prevented so far the identification of the MCC origin cell type and, therefore, the development of effective therapies. The retinoic gene signature was investigated in various MCCP, MCCN, and control fibroblast/epithelial cell lines to elucidate the heterogeneous nature of MCC. Hierarchical clustering and principal component analysis indicated that MCCP and MCCN cells were clusterizable from each other and control cells, according to their retinoic gene signature...
July 2023: Journal of Medical Virology
https://read.qxmd.com/read/37372393/transcriptome-analysis-of-leg-muscles-and-the-effects-of-alox5-on-proliferation-and-differentiation-of-myoblasts-in-haiyang-yellow-chickens
#32
JOURNAL ARTICLE
Xumei Yin, Wenna Fang, Manman Yuan, Hao Sun, Jinyu Wang
Skeletal muscle growth and development from embryo to adult consists of a series of carefully regulated changes in gene expression. This study aimed to identify candidate genes involved in Haiyang Yellow Chickens' growth and to understand the regulatory role of the key gene ALOX5 (arachidonate 5-lipoxygenase) in myoblast proliferation and differentiation. In order to search the key candidate genes in the process of muscle growth and development, RNA sequencing was used to compare the transcriptomes of chicken muscle tissues at four developmental stages and to analyze the effects of ALOX5 gene interference and overexpression on myoblast proliferation and differentiation at the cellular level...
June 1, 2023: Genes
https://read.qxmd.com/read/37333984/integration-failure-of-regenerated-limb-tissue-is-associated-with-incongruencies-in-positional-information-in-the-mexican-axolotl
#33
JOURNAL ARTICLE
Warren A Vieira, Michael Raymond, Kristina Kelley, Matthew A Cherubino, Hande Sahin, Catherine D McCusker
Introduction: Little is known about how the newly regenerated limb tissues in the Mexican axolotl seamlessly integrate with the remaining stump tissues to form a functional structure, and why this doesn't occur in some regenerative scenarios. In this study, we evaluate the phenomenological and transcriptional characteristics associated with integration failure in ectopic limb structures generated by treating anterior-located ectopic blastemas with Retinoic Acid (RA) and focusing on the "bulbus mass" tissue that forms between the ectopic limb and the host site...
2023: Frontiers in Cell and Developmental Biology
https://read.qxmd.com/read/37298722/the-midbrain-preisthmus-a-poorly-known-effect-of-the-isthmic-organizer
#34
JOURNAL ARTICLE
Luis Puelles, Matias Hidalgo-Sánchez
This essay reexamines molecular evidence supporting the existence of the 'preisthmus', a caudal midbrain domain present in vertebrates (studied here in the mouse). It is thought to derive from the embryonic m2 mesomere and appears intercalated between the isthmus (caudally) and the inferior colliculus (rostrally). Among a substantial list of gene expression mappings examined from the Allen Developing and Adult Brain Atlases, a number of quite consistent selective positive markers, plus some neatly negative markers, were followed across embryonic stages E11...
June 5, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/37292966/a-chemo-mechanical-model-of-endoderm-movements-driving-elongation-of-the-amniote-hindgut
#35
Panagiotis Oikonomou, Helena C Cirne, Nandan L Nerurkar
UNLABELLED: While mechanical and biochemical descriptions of development are each essential, integration of upstream morphogenic cues with downstream tissue mechanics remains understudied in many contexts during vertebrate morphogenesis. A posterior gradient of Fibroblast Growth Factor (FGF) ligands generates a contractile force gradient in the definitive endoderm, driving collective cell movements to form the hindgut. Here, we developed a two-dimensional chemo-mechanical model to investigate how mechanical properties of the endoderm and transport properties of FGF coordinately regulate this process...
May 18, 2023: bioRxiv
https://read.qxmd.com/read/37287454/-fgf8-regulates-first-pharyngeal-arch-segmentation-through-pouch-cleft-interactions
#36
JOURNAL ARTICLE
Nathaniel Zbasnik, Jennifer L Fish
Introduction: The pharyngeal arches are transient developmental structures that, in vertebrates, give rise to tissues of the head and neck. A critical process underlying the specification of distinct arch derivatives is segmentation of the arches along the anterior-posterior axis. Formation of ectodermal-endodermal interfaces is a key mediator of this process, and although it is essential, mechanisms regulating the establishment of these interfaces vary between pouches and between taxa. Methods: Here, we focus on the patterning and morphogenesis of epithelia associated with the first pharyngeal arch, the first pharyngeal pouch (pp1) and the first pharyngeal cleft (pc1), and the role of Fgf8 dosage in these processes in the mouse model system...
2023: Frontiers in Cell and Developmental Biology
https://read.qxmd.com/read/37233921/fgf8-p2a-3%C3%A3-gfp-a-new-genetic-mouse-model-for-specifically-labeling-and-sorting-cochlear-inner-hair-cells
#37
JOURNAL ARTICLE
Yi Pan, Shuting Li, Shunji He, Guangqin Wang, Chao Li, Zhiyong Liu, Mingliang Xiang
The cochlear auditory epithelium contains two types of sound receptors, inner hair cells (IHCs) and outer hair cells (OHCs). Mouse models for labelling juvenile and adult IHCs or OHCs exist; however, labelling for embryonic and perinatal IHCs or OHCs are lacking. Here, we generated a new knock-in Fgf8P2A-3×GFP/+ (Fgf8GFP/+ ) strain, in which the expression of a series of three GFP fragments is controlled by endogenous Fgf8 cis-regulatory elements. After confirming that GFP expression accurately reflects the expression of Fgf8, we successfully obtained both embryonic and neonatal IHCs with high purity, highlighting the power of Fgf8GFP/+ ...
May 26, 2023: Neuroscience Bulletin
https://read.qxmd.com/read/37229703/shared-and-distinctive-transcriptomic-and-proteomic-pathways-in-adult-and-juvenile-dermatomyositis
#38
JOURNAL ARTICLE
James Ward, Mythri Ambatipudi, Terrance P O'Hanlon, Michael A Smith, Melissa de Los Reyes, Adam Schiffenbauer, Saifur Rahman, Kamelia Zerrouki, Frederick W Miller, Miguel A Sanjuan, Jian-Liang Li, Kerry A Casey, Lisa G Rider
OBJECTIVE: Transcript and protein expression were interrogated to examine gene locus and pathway regulation in the peripheral blood of active adult dermatomyositis (DM) and juvenile DM (JDM) patients receiving immunosuppressive therapies. METHODS: Expression data from 14 DM and 12 JDM patients were compared to matched healthy controls. Regulatory effects at the transcript and protein level were analyzed by multi-enrichment analysis for assessment of affected pathways within DM and JDM...
May 25, 2023: Arthritis & Rheumatology
https://read.qxmd.com/read/37202388/publisher-correction-combinatorial-effects-on-gene-expression-at-the-lbx1-fgf8-locus-resolve-split-hand-foot-malformation-type-3
#39
Giulia Cova, Juliane Glaser, Robert Schöpflin, Cesar Augusto Prada-Medina, Salaheddine Ali, Martin Franke, Rita Falcone, Miriam Federer, Emanuela Ponzi, Romina Ficarella, Francesca Novara, Lars Wittler, Bernd Timmermann, Mattia Gentile, Orsetta Zuffardi, Malte Spielmann, Stefan Mundlos
No abstract text is available yet for this article.
May 18, 2023: Nature Communications
https://read.qxmd.com/read/37165954/identification-of-genetic-variants-and-phenotypic-characterization-of-a-large-cohort-of-patients-with-congenital-hypopituitarism-and-related-disorders
#40
JOURNAL ARTICLE
Louise C Gregory, Cecilia Cionna, Manuela Cerbone, GOSgene, Mehul T Dattani
PURPOSE: Congenital hypopituitarism (CH) disorders are phenotypically variable. Variants in multiple genes are associated with these disorders, with variable penetrance and inheritance. METHODS: We screened a large cohort (n=1,765) of patients with or at risk of CH using Sanger sequencing, selected according to phenotype, and conducted next generation sequencing (NGS) in 51 families within our cohort. We report the clinical, hormonal and neuroradiological phenotypes of patients with variants in known genes associated with CH...
May 8, 2023: Genetics in Medicine: Official Journal of the American College of Medical Genetics
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