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Dimensionality reduction

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https://www.readbyqxmd.com/read/27910398/development-of-beam-emission-spectroscopy-for-turbulence-transport-study-in-heliotron-j
#1
S Kobayashi, S Ohshima, H Matsuda, X X Lu, D Kokubu, K Ida, T Kobayashi, M Yoshinuma, S Kado, T Oishi, K Nagasaki, H Okada, T Minami, S Yamamoto, Y Nakamura, A Ishizawa, N Kenmochi, Y Otani, S Konoshima, T Mizuuchi
This paper describes the development study of the beam emission spectroscopy (BES) for the turbulent transport study in Heliotron J. Modification of the sightlines (10 × 4 for edge and 10 × 2 for edge) enables us to obtain 2-dimensional BES imaging. The cooling effect on the reduction in the electrical noise of avalanche photodiode (APD) assembly has been investigated using a refrigerant cooling system. When the temperature of the APD element has set to be -20 °C, the electrical noise can be reduced more than 50%...
November 2016: Review of Scientific Instruments
https://www.readbyqxmd.com/read/27906812/effect-of-cyclopentolate-on-in-vivo-schlemm-canal-microarchitecture-in-healthy-subjects
#2
Michael S Rosman, Alon Skaat, Jason L Chien, Mark P Ghassibi, Tarela F Sarimiye, Robert Ritch, Jeffrey M Liebmann, Sung Chul Park
PURPOSE: To characterize the in vivo effect of cyclopentolate on the microstructure of Schlemm canal (SC) in healthy eyes. METHODS: For healthy subjects, 81 serial horizontal enhanced depth imaging optical coherence tomography B-scans (interval between scans, ∼35 μm) of the nasal corneoscleral limbal area were obtained before and 1 hour after cyclopentolate 1% administration in 1 eye. The structures of aqueous and blood vessels in each scan were used as landmarks to select 50 overlapping scans between the 2 sets of 81 serial scans (before and after cyclopentolate administration)...
November 30, 2016: Journal of Glaucoma
https://www.readbyqxmd.com/read/27906482/three-dimensional-super-branched-pdcu-nanoarchitectures-exposed-on-controlled-crystal-facets
#3
Muhammad Iqbal, Cuiling Li, Jung Ho Kim, Saad M Alshehri, Tsuruo Nakayama, Yusuke Yamauchi
Despite the great success of controlled synthesis of metal nanocrystals with various sizes and morphologies, an efficient one-pot approach to preparing well-organized three-dimensional (3D) structures with unique facets exposed remains a great challenge. Herein, we report a unique 3D nanoarchitecture for PdCu alloy, created by a simple chemical reduction method, in which nanosized octahedral PdCu nanocrystals are directly assembled into 3D super-branched structures. Detailed investigations of its electrocatalytic performance demonstrate that the as-prepared facet-controlled PdCu super-branched nanostructures possess higher activity towards the formic acid oxidation reaction in comparison to the commercially available Pd black catalyst...
December 1, 2016: Chemistry: a European Journal
https://www.readbyqxmd.com/read/27905111/depth-enhancement-of-3d-microscopic-living-cell-image-using-incoherent-fluorescent-digital-holography
#4
L T Bang, H Y Wu, Y Zhao, E G Kim, N Kim
Multilayer images of living cells are typically obtained using confocal or multiphoton microscopy. However, limitations on the distance between consecutive scan layers hinder high-resolution three-dimensional reconstruction, and scattering strongly degrades images of living cell components. Consequently, when overlapping information from different layers is focused on a specific point in the camera, this causes uncertainty in the depiction of the cell components. We propose a method that combines the Fresnel incoherent correlation holography and a depth-of-focus reduction algorithm to enhance the depth information of three-dimensional cell images...
December 1, 2016: Journal of Microscopy
https://www.readbyqxmd.com/read/27903193/three-dimensional-assessment-of-the-effects-of-high-density-embolization-material-on-the-absorbed-dose-in-the-target-for-gamma-knife-radiosurgery-of-arteriovenous-malformations
#5
Yoichi Watanabe, Divyajot Sandhu, Leighton Warmington, Sean Moen, Ramachandra Tummala
OBJECTIVE Arteriovenous malformation (AVM) is an intracranial vascular disorder. Gamma Knife radiosurgery (GKRS) is used in conjunction with intraarterial embolization to eradicate the nidus of AVMs. Clinical results indicate that patients with prior embolization tend to gain less benefit from GKRS. The authors hypothesized that this was partly caused by dosimetric deficiency. The actual dose delivered to the target may be smaller than the intended dose because of increased photon attenuation by high-density embolic materials...
December 2016: Journal of Neurosurgery
https://www.readbyqxmd.com/read/27900268/management-of-syndesmotic-injuries-what-is-the-evidence
#6
REVIEW
Marc Schnetzke, Sven Y Vetter, Nils Beisemann, Benedict Swartman, Paul A Grützner, Jochen Franke
Ankle fractures are accompanied by a syndesmotic injury in about 10% of operatively treated ankle fractures. Usually, the total rupture of the syndesmotic ligaments with an external rotation force is associated with a Weber type B or C fracture or a Maisonneuve fracture. The clinical assessment should consist of a comprehensive history including mechanism of injury followed by a specific physical examination. Radiographs, and if in doubt magnetic resonance imaging, are needed to ascertain the syndesmotic injury...
November 18, 2016: World Journal of Orthopedics
https://www.readbyqxmd.com/read/27898366/synthesis-characterization-and-serum-albumin-binding-studies-of-vitamin-k3-derivatives
#7
Murugesan Suganthi, Kuppanagounder P Elango
Synthesis, characterization and bovine serum albumin (BSA) binding properties of three derivatives of vitamin K3 have been described. Results of UV-Vis and fluorescence spectra indicate complexation between BSA and the ligands with conformational changes in protein, which is strongly supported by synchronous and three dimensional fluorescence studies. Addition of the ligands quenches the fluorescence of BSA which is accompanied by reduction in quantum yield (Ф) from 0.1010 to 0.0775-0.0986 range. Thermodynamic investigations reveal that hydrophobic interaction is the major binding force in the spontaneous binding of these ligands with BSA...
November 22, 2016: Journal of Photochemistry and Photobiology. B, Biology
https://www.readbyqxmd.com/read/27898160/haptic-feedback-improves-surgeons-user-experience-and-fracture-reduction-in-facial-trauma-simulation
#8
Sabine Girod, Sara C Schvartzman, Dyani Gaudilliere, Kenneth Salisbury, Rebeka Silva
Computer-assisted surgical (CAS) planning tools are available for craniofacial surgery, but are usually based on computer-aided design (CAD) tools that lack the ability to detect the collision of virtual objects (i.e., fractured bone segments). We developed a CAS system featuring a sense of touch (haptic) that enables surgeons to physically interact with individual, patient-specific anatomy and immerse in a three-dimensional virtual environment. In this study, we evaluated initial user experience with our novel system compared to an existing CAD system...
2016: Journal of Rehabilitation Research and Development
https://www.readbyqxmd.com/read/27897146/magnetotransport-properties-near-the-dirac-point-of-dirac-semimetal-cd3as2-nanowires
#9
Li-Xian Wang, Shuo Wang, Jin-Guang Li, Cai-Zhen Li, Jun Xu, Dapeng Yu, Zhi-Min Liao
Three-dimensional (3D) Dirac semimetals are featured by 3D linear energy-momentum dispersion relation, which have been proposed to be a desirable system to study Dirac fermions in 3D space and Weyl fermions in solid-state materials. Significantly, to reveal exotic transport properties of Dirac semimetals, the Fermi level should be close to the Dirac point, around which the linear dispersion is retained. Here we report the magnetotransport properties near the Dirac point in Cd3As2 nanowires, manifesting the evolution of band structure under magnetic field...
November 29, 2016: Journal of Physics. Condensed Matter: An Institute of Physics Journal
https://www.readbyqxmd.com/read/27897009/an-updated-debarcoding-tool-for-mass-cytometry-with-cell-type-specific-and-cell-sample-specific-stringency-adjustment
#10
Kristen I Fread, William D Strickland, Garry P Nolan, Eli R Zunder
Pooled sample analysis by mass cytometry barcoding carries many advantages: reduced antibody consumption, increased sample throughput, removal of cell doublets, reduction of cross-contamination by sample carryover, and the elimination of tube-to-tube-variability in antibody staining. A single-cell debarcoding algorithm was previously developed to improve the accuracy and yield of sample deconvolution, but this method was limited to using fixed parameters for debarcoding stringency filtering, which could introduce cell-specific or sample-specific bias to cell yield in scenarios where barcode staining intensity and variance are not uniform across the pooled samples...
2016: Pacific Symposium on Biocomputing
https://www.readbyqxmd.com/read/27896959/prosnet-integrating-homology-with-molecular-networks-for-protein-function-prediction
#11
Sheng Wang, Meng Qu, Jian Peng
Automated annotation of protein function has become a critical task in the post-genomic era. Network-based approaches and homology-based approaches have been widely used and recently tested in large-scale community-wide assessment experiments. It is natural to integrate network data with homology information to further improve the predictive performance. However, integrating these two heterogeneous, high-dimensional and noisy datasets is non-trivial. In this work, we introduce a novel protein function prediction algorithm ProSNet...
2016: Pacific Symposium on Biocomputing
https://www.readbyqxmd.com/read/27895684/investigation-of-the-gold-nanoparticles-effects-on-the-prostate-dose-distribution-in-brachytherapy-gel-dosimetry-and-monte-carlo-method
#12
Hossein Khosravi, Bijan Hashemi, Faezeh Rahmani, Ahmad Ebadi
PURPOSE: In this work, gold nanoparticles (GNPs) were embedded in the MAGIC-f polymer gel irradiated with the (192)Ir brachytherapy sources. MATERIAL AND METHODS: At the first plexiglas phantom was made as the human pelvis. The GNPs were synthesized with 15 nm in diameter and 0.1 mM (0.0197 mg/ml) in concentration by using a chemical reduction method. Then, the MAGIC-f gel was synthesized. The fabricated gel was poured into the tubes located at the prostate (with and without the GNPs) locations of the phantom...
October 2016: Journal of Contemporary Brachytherapy
https://www.readbyqxmd.com/read/27895518/single-leg-squats-can-predict-leg-alignment-in-dancers-performing-ballet-movements-in-turnout
#13
Luke S Hopper, Nahoko Sato, Andries L Weidemann
The physical assessments used in dance injury surveillance programs are often adapted from the sports and exercise domain. Bespoke physical assessments may be required for dance, particularly when ballet movements involve "turning out" or external rotation of the legs beyond that typically used in sports. This study evaluated the ability of the traditional single-leg squat to predict the leg alignment of dancers performing ballet movements with turnout. Three-dimensional kinematic data of dancers performing the single-leg squat and five ballet movements were recorded and analyzed...
2016: Open Access Journal of Sports Medicine
https://www.readbyqxmd.com/read/27895039/region-specific-effect-of-the-decellularized-meniscus-extracellular-matrix-on-mesenchymal-stem-cell-based-meniscus-tissue-engineering
#14
Kazunori Shimomura, Benjamin B Rothrauff, Rocky S Tuan
BACKGROUND: The meniscus is the most commonly injured knee structure, and surgical repair is often ineffective. Tissue engineering-based repair or regeneration may provide a needed solution. Decellularized, tissue-derived extracellular matrices (ECMs) have received attention for their potential use as tissue-engineered scaffolds. In considering meniscus-derived ECMs (mECMs) for meniscus tissue engineering, it is noteworthy that the inner and outer regions of the meniscus have different structural and biochemical features, potentially directing the differentiation of cells toward region-specific phenotypes...
November 28, 2016: American Journal of Sports Medicine
https://www.readbyqxmd.com/read/27893716/hic-5-remodeling-of-the-stromal-matrix-promotes-breast-tumor-progression
#15
G J Goreczny, J L Ouderkirk-Pecone, E C Olson, M Krendel, C E Turner
The remodeling of the stromal extracellular matrix (ECM) has a crucial, but incompletely understood role during tumor progression and metastasis. Hic-5, a focal adhesion scaffold protein, has previously been implicated in tumor cell invasion, proliferation and metastasis. To investigate the role of Hic-5 in breast tumor progression in vivo, Hic-5(-/-) mice were generated and crossed with the Mouse Mammary Tumor Virus-Polyoma Middle T-Antigen mouse. Tumors from the Hic-5(-/-);PyMT mice exhibited increased latency and reduced growth, with fewer lung metastases, as compared with Hic-5(+/-);PyMT mice...
November 28, 2016: Oncogene
https://www.readbyqxmd.com/read/27891206/atomic-structural-evolution-during-the-reduction-of-%C3%AE-fe2o3-nanowires
#16
Wenhui Zhu, Jonathan Winterstein, Itai Maimon, Qiyue Yin, Lu Yuan, Aleksey N Kolmogorov, Renu Sharma, Guangwen Zhou
The atomic-scale reduction mechanism of α-Fe2O3 nanowires by H2 was followed using transmission electron microscopy to reveal the evolution of atomic structures and the associated transformation pathways for different iron oxides. The reduction commences with the generation of oxygen vacancies that order onto every 10(th) [Formula: see text] plane. This vacancy ordering is followed by an allotropic transformation of α-Fe2O3 → γ-Fe2O3 along with the formation of Fe3O4 nanoparticles on the surface of the γ-Fe2O3 nanowire by a topotactic transformation process, which shows 3D correspondence between the structures of the product and its host...
July 14, 2016: Journal of Physical Chemistry. C, Nanomaterials and Interfaces
https://www.readbyqxmd.com/read/27891085/pain-perception-can-be-modulated-by-mindfulness-training-a-resting-state-fmri-study
#17
I-Wen Su, Fang-Wei Wu, Keng-Chen Liang, Kai-Yuan Cheng, Sung-Tsang Hsieh, Wei-Zen Sun, Tai-Li Chou
The multi-dimensional nature of pain renders difficult a holistic understanding of it. The conceptual framework of pain is said to be cognitive-evaluative, in addition to being sensory-discriminative and affective-motivational. To compare participants' brain-behavior response before and after a 6-week mindfulness-based stress reduction training course on mindfulness in relation to pain modulation, three questionnaires (the Dallas Pain Questionnaire, Short Form McGill Pain Questionnaire-SFMPQ, and Kentucky Inventory of Mindfulness) as well as resting-state functional magnetic resonance imaging were administered to participants, divided into a pain-afflicted group (N = 18) and a control group (N = 16)...
2016: Frontiers in Human Neuroscience
https://www.readbyqxmd.com/read/27891080/enhanced-burst-suppression-and-disruption-of-local-field-potential-synchrony-in-a-mouse-model-of-focal-cortical-dysplasia-exhibiting-spike-wave-seizures
#18
Anthony J Williams, Chen Zhou, Qian-Quan Sun
Focal cortical dysplasias (FCDs) are a common cause of brain seizures and are often associated with intractable epilepsy. Here we evaluated aberrant brain neurophysiology in an in vivo mouse model of FCD induced by neonatal freeze lesions (FLs) to the right cortical hemisphere (near S1). Linear multi-electrode arrays were used to record extracellular potentials from cortical and subcortical brain regions near the FL in anesthetized mice (5-13 months old) followed by 24 h cortical electroencephalogram (EEG) recordings...
2016: Frontiers in Neural Circuits
https://www.readbyqxmd.com/read/27889665/a-three-dimensional-spheroidal-cancer-model-based-on-peg-fibrinogen-hydrogel-microspheres
#19
Shantanu Pradhan, Jacob M Clary, Dror Seliktar, Elizabeth A Lipke
Three-dimensional (3D) in vitro cancer models offer an attractive approach towards the investigation of tumorigenic phenomena and other cancer studies by providing dimensional context and higher degree of physiological relevance than that offered by conventional two-dimensional (2D) models. The multicellular tumor spheroid model, formed by cell aggregation, is considered to be the "gold standard" for 3D cancer models, due to its ease and simplicity of use. Although better than 2D models, tumor spheroids are unable to replicate key features of the native tumor microenvironment, particularly due to a lack of surrounding extracellular matrix components and heterogeneity in shape, size and aggregate forming tendencies...
November 1, 2016: Biomaterials
https://www.readbyqxmd.com/read/27888317/effect-of-tibial-slope-changes-on-femorotibial-contact-kinematics-after-cruciate-retaining-total-knee-arthroplasty
#20
Xi-Qing Pan, A-Qin Peng, Fei Wang, Feng Li, Xi-Zeng Nie, Xi Yang, Gang Ji, Xiao-Meng Wang
PURPOSE: The present study was undertaken to evaluate the effect of tibial slope (TS) changes on the femorotibial articular contact kinematics in subjects undergoing posterior cruciate-retaining total knee arthroplasty (CRTKA). METHODS: Eighteen knees in nine patients with medial osteoarthritis who underwent CRTKA using the same size prosthesis were analysed preoperatively and 2 years after TKA. TS changes were calculated on lateral radiographs taken before and after TKA...
November 25, 2016: Knee Surgery, Sports Traumatology, Arthroscopy: Official Journal of the ESSKA
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