keyword
https://read.qxmd.com/read/38612920/x-linked-epilepsies-a-narrative-review
#21
REVIEW
Pia Bernardo, Claudia Cuccurullo, Marica Rubino, Gabriella De Vita, Gaetano Terrone, Leonilda Bilo, Antonietta Coppola
X-linked epilepsies are a heterogeneous group of epileptic conditions, which often overlap with X-linked intellectual disability. To date, various X-linked genes responsible for epilepsy syndromes and/or developmental and epileptic encephalopathies have been recognized. The electro-clinical phenotype is well described for some genes in which epilepsy represents the core symptom, while less phenotypic details have been reported for other recently identified genes. In this review, we comprehensively describe the main features of both X-linked epileptic syndromes thoroughly characterized to date ( PCDH19 -related DEE, CDKL5 -related DEE, MECP2 -related disorders), forms of epilepsy related to X-linked neuronal migration disorders (e...
April 8, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38580404/real-time-mbdi-rpa-using-methyl-cpg-binding-protein-2-a-real-time-detection-method-for-simple-and-rapid-estimation-of-cpg-methylation-status
#22
JOURNAL ARTICLE
Mina Ishidoya, Toshitsugu Fujita, Sadatomo Tasaka, Hodaka Fujii
BACKGROUND: Analysis of CpG methylation is informative for cancer diagnosis. Previously, we developed a novel method to discriminate CpG methylation status in target DNA by blocking recombinase polymerase amplification (RPA), an isothermal DNA amplification technique, using methyl-CpG binding domain (MBD) protein 2 (MBD2). The method was named MBD protein interference-RPA (MBDi-RPA). In this study, MBDi-RPA was performed using methyl-CpG binding protein 2 (MeCP2), another MBD family protein, as the blocking agent...
May 8, 2024: Analytica Chimica Acta
https://read.qxmd.com/read/38578457/crl4-dcaf13-e3-ubiquitin-ligase-targets-mecp2-for-degradation-to-prevent-dna-hypermethylation-and-ensure-normal-transcription-in-growing-oocytes
#23
JOURNAL ARTICLE
Peipei Ren, Xiaomei Tong, Junjian Li, Huifang Jiang, Siya Liu, Xiang Li, Mengru Lai, Weijie Yang, Yan Rong, Yingyi Zhang, Jiamin Jin, Yerong Ma, Weiwei Pan, Heng-Yu Fan, Songying Zhang, Yin-Li Zhang
The DNA methylation is gradually acquired during oogenesis, a process sustained by successful follicle development. However, the functional roles of methyl-CpG-binding protein 2 (MeCP2), an epigenetic regulator displaying specifical binding with methylated DNA, remains unknown in oogenesis. In this study, we found MeCP2 protein was highly expressed in primordial and primary follicle, but was almost undetectable in secondary follicles. However, in aged ovary, MeCP2 protein is significantly increased in both oocyte and granulosa cells...
April 5, 2024: Cellular and Molecular Life Sciences: CMLS
https://read.qxmd.com/read/38566815/genomic-analysis-in-chilean-patients-with-suspected-rett-syndrome-keep-a-broad-differential-diagnosis
#24
JOURNAL ARTICLE
Florencia Brito, Catalina Lagos, Jessica Cubillos, Joan Orellana, Mallen Gajardo, Daniela Böhme, Gonzalo Encina, Gabriela M Repetto
Introduction: Rett syndrome (RTT, MIM #312750) is a rare genetic disorder that leads to developmental regression and severe disability and is caused by pathogenic variants in the MECP2 gene. The diagnosis of RTT is based on clinical features and, depending on resources and access, on molecular confirmation. There is scarce information on molecular diagnosis from patients in Latin America, mostly due to limited availability and coverage of genomic testing. This pilot study aimed to implement genomic testing and characterize clinical and molecular findings in a group of Chilean patients with a clinical diagnosis of RTT...
2024: Frontiers in Genetics
https://read.qxmd.com/read/38562452/assessing-the-utility-of-large-language-models-for-phenotype-driven-gene-prioritization-in-rare-genetic-disorder-diagnosis
#25
Junyoung Kim, Jingye Yang, Kai Wang, Chunhua Weng, Cong Liu
Phenotype-driven gene prioritization is a critical process in the diagnosis of rare genetic disorders for identifying and ranking potential disease-causing genes based on observed physical traits or phenotypes. While traditional approaches rely on curated knowledge graphs with phenotype-gene relations, recent advancements in large language models have opened doors to the potential of AI predictions through extensive training on diverse corpora and complex models. This study conducted a comprehensive evaluation of five large language models, including two Generative Pre-trained Transformers series, and three Llama2 series, assessing their performance across three key metrics: task completeness, gene prediction accuracy, and adherence to required output structures...
March 21, 2024: ArXiv
https://read.qxmd.com/read/38559034/synthetic-dosage-compensating-mirna-circuits-for-quantitative-gene-therapy
#26
Michael James Flynn, Acacia M Mayfield, Rongrong Du, Viviana Gradinaru, Michael B Elowitz
A longstanding challenge in gene therapy is expressing a dosage-sensitive gene within a tight therapeutic window. For example, loss of MECP2 function causes Rett syndrome, while its duplication causes MECP2 duplication syndrome. Viral gene delivery methods generate variable numbers of gene copies in individual cells, creating a need for gene dosage-invariant expression systems. Here, we introduce a compact miRNA-based, incoherent feed-forward loop circuit that achieves precise control of Mecp2 expression in cells and brains, and improves outcomes in an AAV-based mouse model of Rett syndrome gene therapy...
March 14, 2024: bioRxiv
https://read.qxmd.com/read/38551133/behavioral-and-transcriptomic-analyses-of-mecp2-function-in-zebrafish
#27
JOURNAL ARTICLE
Nicholas J Santistevan, Colby T Ford, Cole S Gilsdorf, Yevgenya Grinblat
Rett syndrome (RTT), a human neurodevelopmental disorder characterized by severe cognitive and motor impairments, is caused by dysfunction of the conserved transcriptional regulator Methyl-CpG-binding protein 2 (MECP2). Genetic analyses in mouse Mecp2 mutants, which exhibit key features of human RTT, have been essential for deciphering the mechanisms of MeCP2 function; nonetheless, our understanding of these complex mechanisms is incomplete. Zebrafish mecp2 mutants exhibit mild behavioral deficits but have not been analyzed in depth...
March 29, 2024: American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics
https://read.qxmd.com/read/38540345/prevalence-of-endocrinopathies-in-a-cohort-of-patients-with-rett-syndrome-a-two-center-observational-study
#28
JOURNAL ARTICLE
Giorgia Pepe, Roberto Coco, Domenico Corica, Gabriella Di Rosa, Filip Bossowski, Magdalena Skorupska, Tommaso Aversa, Stefano Stagi, Malgorzata Wasniewska
Systematic data on endocrinopathies in Rett syndrome (RTT) patients remain limited and inconclusive. The aim of this retrospective observational two-center study was to assess the prevalence of endocrinopathies in a pediatric population of RTT patients. A total of 51 Caucasian patients (47 girls, 4 boys) with a genetically confirmed diagnosis of RTT were enrolled (mean age 9.65 ± 5.9 years). The patients were referred from the Rett Center of two Italian Hospitals for endocrinological evaluation. All the study population underwent clinical and auxological assessments and hormonal workups...
February 24, 2024: Genes
https://read.qxmd.com/read/38524134/autoimmune-and-neuropsychiatric-phenotypes-in-a-mecp2-transgenic-mouse-model-on-c57bl-6-background
#29
JOURNAL ARTICLE
Yaxi Li, Shu Zhang, Chenling Tang, Bowen Yang, Fatin Atrooz, Zhifeng Ren, Chandra Mohan, Samina Salim, Tianfu Wu
INTRODUCTION: Systemic Lupus Erythematosus (SLE) impacts the central nervous system (CNS), leading to severe neurological and psychiatric manifestations known as neuropsychiatric lupus (NPSLE). The complexity and heterogeneity of clinical presentations of NPSLE impede direct investigation of disease etiology in patients. The limitations of existing mouse models developed for NPSLE obstruct a comprehensive understanding of this disease. Hence, the identification of a robust mouse model of NPSLE is desirable...
2024: Frontiers in Immunology
https://read.qxmd.com/read/38496825/distribution-of-hand-function-by-age-in-individuals-with-rett-syndrome
#30
JOURNAL ARTICLE
Jeffrey L Neul, Tim A Benke, Eric D Marsh, Jane B Lane, David N Lieberman, Steven A Skinner, Daniel G Glaze, Bernhard Suter, Peter T Heydemann, Arthur A Beisang, Shannon M Standridge, Robin C C Ryther, Richard H Haas, Lloyd J Edwards, Amitha Ananth, Alan K Percy
OBJECTIVE: To determine the longitudinal distribution of hand function skills in individuals with classic Rett Syndrome (RTT), an X-linked dominant neurodevelopmental disorder, and correlate with MECP2 variants. METHOD: We conducted a longitudinal study of 946 girls and young women with typical RTT seen between 2006 and 2021 in the US Natural History Study (NHS) featuring a structured clinical evaluation to assess the level of hand function skills. The specific focus in this study was to assess longitudinal variation of hand skills from age 2 through age 18 years in relation to specific MECP2 variant groups...
September 2023: Ann Child Neurol Soc
https://read.qxmd.com/read/38495533/nuclease-free-precise-genome-editing-corrects-mecp2-mutations-associated-with-rett-syndrome
#31
JOURNAL ARTICLE
Swati Bijlani, Ka Ming Pang, Lakshmi V Bugga, Sampath Rangasamy, Vinodh Narayanan, Saswati Chatterjee
Rett syndrome is an acquired progressive neurodevelopmental disorder caused by de novo mutations in the X-linked MECP2 gene which encodes a pleiotropic protein that functions as a global transcriptional regulator and a chromatin modifier. Rett syndrome predominantly affects heterozygous females while affected male hemizygotes rarely survive. Gene therapy of Rett syndrome has proven challenging due to a requirement for stringent regulation of expression with either over- or under-expression being toxic. Ectopic expression of MECP2 in conjunction with regulatory miRNA target sequences has achieved some success, but the durability of this approach remains unknown...
2024: Frontiers in genome editing
https://read.qxmd.com/read/38469559/-mecp2-knock-out-astrocytes-affect-synaptogenesis-by-interleukin-6-dependent-mechanisms
#32
JOURNAL ARTICLE
Elena Albizzati, Martina Breccia, Elena Florio, Cecilia Cabasino, Francesca Maddalena Postogna, Riccardo Grassi, Enrica Boda, Cristina Battaglia, Clara De Palma, Concetta De Quattro, Davide Pozzi, Nicoletta Landsberger, Angelisa Frasca
Synaptic abnormalities are a hallmark of several neurological diseases, and clarification of the underlying mechanisms represents a crucial step toward the development of therapeutic strategies. Rett syndrome (RTT) is a rare neurodevelopmental disorder, mainly affecting females, caused by mutations in the X-linked methyl-CpG-binding protein 2 ( MECP2 ) gene, leading to a deep derangement of synaptic connectivity. Although initial studies supported the exclusive involvement of neurons, recent data have highlighted the pivotal contribution of astrocytes in RTT pathogenesis through non-cell autonomous mechanisms...
March 15, 2024: IScience
https://read.qxmd.com/read/38458775/association-of-genetic-variation-on-x-chromosome-with-systemic-lupus-erythematosus-in-both-thai-and-chinese-populations
#33
JOURNAL ARTICLE
Pattarin Tangtanatakul, Yao Lei, Krisana Jaiwan, Wanling Yang, Manon Boonbangyang, Punna Kunhapan, Pimpayao Sodsai, Surakameth Mahasirimongkol, Prapaporn Pisitkun, Yi Yang, Jakris Eu-Ahsunthornwattana, Wichai Aekplakorn, Natini Jinawath, Nareemarn Neelapaichit, Nattiya Hirankarn, Yong-Fei Wang
OBJECTIVES: X chromosome has been considered as a risk factor for SLE, which is a prototype of autoimmune diseases with a significant sex difference (female:male ratio is around 9:1). Our study aimed at exploring the association of genetic variants in X chromosome and investigating the influence of trisomy X in the development of SLE. METHODS: X chromosome-wide association studies were conducted using data from both Thai (835 patients with SLE and 2995 controls) and Chinese populations (1604 patients with SLE and 3324 controls)...
March 8, 2024: Lupus Science & Medicine
https://read.qxmd.com/read/38456444/stroke-causes-dna-methylation-at-ncx1-heart-promoter-in-the-brain-via-dnmt1-mecp2-rest-epigenetic-complex
#34
JOURNAL ARTICLE
Natascia Guida, Angelo Serani, Luca Sanguigno, Luigi Mascolo, Ornella Cuomo, Salvatore Fioriniello, Domenico Marano, Floriana Della Ragione, Serenella Anzilotti, Paola Brancaccio, Pasquale Molinaro, Giuseppe Pignataro, Lucio Annunziato, Luigi Formisano
BACKGROUND: REST (Repressor-Element 1 [RE1]-silencing transcription factor) inhibits Na+ /Ca2+ exchanger-1 ( Ncx1 ) transcription in neurons through the binding of RE1 site on brain promoter (Br) after stroke. We identified a new putative RE1 site in Ncx1 heart promoter (Ht) sequence ( Ht -RE1) that participates in neuronal Ncx1 transcription. Because REST recruits DNA-methyltransferase-1 (DNMT1) and MeCP2 (methyl-CpG binding protein 2) on different neuronal genes, we investigated the role of this complex in Ncx1 transcriptional regulation after stroke...
March 8, 2024: Journal of the American Heart Association
https://read.qxmd.com/read/38452586/prognostic-value-of-genome-wide-methylation-in-acute-on-chronic-hepatitis-b-liver-failure
#35
JOURNAL ARTICLE
Haiming Li, Shuai Gao, Jieru Yang, Ying Zhang, Xuefei, Yuchen Fan, Kai Wang
AIM: Methylation status of genome varies between pre-acute-on-chronic hepatitis B liver failure (pre-ACHBLF), acute-on-chronic hepatitis B liver failure (ACHBLF), and chronic hepatitis B patients. This study aimed to find better prognostic indicators for acute-on-chronic liver failure. METHODS: The level of global genome methylation in peripheral blood mononuclear cells (PBMCs) was detected. The overall genome methylation rate was determined using MethylFlash™ Methylated DNA Quantification Kit(Colorimetric)...
March 2, 2024: Pathology, Research and Practice
https://read.qxmd.com/read/38448019/-genetic-analysis-and-prenatal-diagnosis-for-a-chinese-pedigree-affected-with-co-morbid-ornithine-carbamoyl-transferase-deficiency-and-mecp2-duplication-syndrome
#36
JOURNAL ARTICLE
Qinghua Zhang, Shengju Hao, Ling Hui, Lei Zheng, Xing Wang, Xuan Feng, Furong Liu, Xue Chen, Bingbo Zhou, Yupei Wang, Chuan Zhang
OBJECTIVE: To explore the genetic basis for a Chinese pedigree affected with co-morbid Ornithine carbamoyl transferase deficiency (OTCD) and MECP2 duplication syndrome. METHODS: A proband who was admitted to the Neonatal Intensive Care Unit of Gansu Provincial Maternal and Child Health Care Hospital on December 19, 2017 was selected as the study subject. High-throughput sequencing and multiplex ligation-dependent probe amplification (MLPA) were carried out for her pedigree, and short tandem repeat-based linkage analysis and chromosome copy number variation sequencing (CNV-seq) were used for the prenatal diagnosis...
March 10, 2024: Zhonghua Yi Xue Yi Chuan Xue za Zhi, Zhonghua Yixue Yichuanxue Zazhi, Chinese Journal of Medical Genetics
https://read.qxmd.com/read/38433353/sensory-experiences-questionnaire-unravels-differences-in-sensory-profiles-between-mecp2-related-disorders
#37
JOURNAL ARTICLE
Bernhard Suter, Davut Pehlivan, Muharrem Ak, Holly K Harris, Ariel M Lyons-Warren
The methyl CpG-binding protein-2 (MECP2) gene is located on the Xq28 region. Loss of function mutations or increased copies of MECP2 result in Rett syndrome (RTT) and MECP2 duplication syndrome (MDS), respectively. Individuals with both disorders exhibit overlapping autism symptoms, yet few studies have dissected the differences between these gene dosage sensitive disorders. Further, research examining sensory processing patterns in persons with RTT and MDS is largely absent. Thus, the goal of this study was to analyze and compare sensory processing patterns in persons with RTT and MDS...
March 3, 2024: Autism Research: Official Journal of the International Society for Autism Research
https://read.qxmd.com/read/38430393/systematic-and-quantitative-analysis-of-stop-codon-readthrough-in-rett-syndrome-nonsense-mutations
#38
JOURNAL ARTICLE
Dennis Lebeda, Adrian Fierenz, Lina Werfel, Rina Rosin-Arbesfeld, Julia Hofhuis, Sven Thoms
Rett syndrome (RTT) is a neurodevelopmental disorder resulting from genetic mutations in the methyl CpG binding protein 2 (MeCP2) gene. Specifically, around 35% of RTT patients harbor premature termination codons (PTCs) within the MeCP2 gene due to nonsense mutations. A promising therapeutic avenue for these individuals involves the use of aminoglycosides, which stimulate translational readthrough (TR) by causing stop codons to be interpreted as sense codons. However, the effectiveness of this treatment depends on several factors, including the type of stop codon and the surrounding nucleotides, collectively referred to as the stop codon context (SCC)...
March 2, 2024: Journal of Molecular Medicine: Official Organ of the "Gesellschaft Deutscher Naturforscher und Ärzte"
https://read.qxmd.com/read/38429622/the-alpha-synuclein-gene-snca-is-a-genomic-target-of-methyl-cpg-binding-protein-2-mecp2-implications-for-parkinson-s-disease-and-rett-syndrome
#39
JOURNAL ARTICLE
Ina Schmitt, Bernd O Evert, Amit Sharma, Hassan Khazneh, Chris Murgatroyd, Ullrich Wüllner
Mounting evidence suggests a prominent role for alpha-synuclein (a-syn) in neuronal cell function. Alterations in the levels of cellular a-syn have been hypothesized to play a critical role in the development of Parkinson's disease (PD); however, mechanisms that control expression of the gene for a-syn (SNCA) in cis and trans as well as turnover of a-syn are not well understood. We analyzed whether methyl-CpG binding protein 2 (MeCP2), a protein that specifically binds methylated DNA, thus regulating transcription, binds at predicted binding sites in intron 1 of the SNCA gene and regulates a-syn protein expression...
March 2, 2024: Molecular Neurobiology
https://read.qxmd.com/read/38420187/calcium-dependent-hyperexcitability-in-human-stem-cell-derived-rett-syndrome-neuronal-networks
#40
JOURNAL ARTICLE
Kartik S Pradeepan, Fraser P McCready, Wei Wei, Milad Khaki, Wenbo Zhang, Michael W Salter, James Ellis, Julio Martinez-Trujillo
BACKGROUND: Mutations in MECP2 predominantly cause Rett syndrome and can be modeled in vitro using human stem cell-derived neurons. Patients with Rett syndrome have signs of cortical hyperexcitability, such as seizures. Human stem cell-derived MECP2 null excitatory neurons have smaller soma size and reduced synaptic connectivity but are also hyperexcitable due to higher input resistance. Paradoxically, networks of MECP2 null neurons show a decrease in the frequency of network bursts consistent with a hypoconnectivity phenotype...
March 2024: Biol Psychiatry Glob Open Sci
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