keyword
https://read.qxmd.com/read/38674360/building-minimized-epigenetic-clock-by-iplex-massarray-platform
#1
JOURNAL ARTICLE
Ekaterina Davydova, Alexey Perenkov, Maria Vedunova
Epigenetic clocks are valuable tools for estimating both chronological and biological age by assessing DNA methylation levels at specific CpG dinucleotides. While conventional epigenetic clocks rely on genome-wide methylation data, targeted approaches offer a more efficient alternative. In this study, we explored the feasibility of constructing a minimized epigenetic clock utilizing data acquired through the iPlex MassARRAY technology. The study enrolled a cohort of relatively healthy individuals, and their methylation levels of eight specific CpG dinucleotides in genes SLC12A5 , LDB2 , FIGN , ACSS3 , FHL2 , and EPHX3 were evaluated using the iPlex MassARRAY system and the Illumina EPIC array...
March 28, 2024: Genes
https://read.qxmd.com/read/38664060/fhl2-in-arterial-medial-calcification-in-chronic-kidney-disease
#2
JOURNAL ARTICLE
Yuan-Ru Liao, Yu-Cheng Tsai, Tsung-Han Hsieh, Ming-Tsun Tsai, Feng-Yen Lin, Shing-Jong Lin, Chih-Ching Lin, Hou-Yu Chiang, Pao-Hsien Chu, Szu-Yuan Li
BACKGROUND AND HYPOTHESIS: Arterial medial calcification (AMC) is a common complication in individuals with chronic kidney disease (CKD), which can lead to cardiovascular morbidity and mortality. The progression of AMC is controlled by a key transcription factor called runt-related transcription factor 2 (RUNX2), which induces vascular smooth muscle cells (VSMCs) transdifferentiation into a osteogenic phenotype. However, RUNX2 has not been targeted for therapy due to its essential role in bone development...
April 25, 2024: Nephrology, Dialysis, Transplantation
https://read.qxmd.com/read/38629424/four-and-a-half-lim-domains-2-fhl2-attenuates-tumorigenesis-of-gastrointestinal-stromal-tumors-gists-by-negatively-regulating-kit-signaling
#3
JOURNAL ARTICLE
Shaoting Zhang, Liangying Zhang, Dan Zhang, Yue Guo, Yisha Gao, Zongying Jiang, Shujing Li, Anbu Liu, Xu Cao, Jinhai Tian, Sien Zhao, Yuanyuan Yu, Wei Yang, Ru Bai, Ling Huang, Hongli Yan, Hui Zhao, Jianmin Sun
Gastrointestinal stromal tumors (GISTs) are predominately induced by KIT mutants. In this study, we found that four and a half LIM domains 2 (FHL2) was highly expressed in GISTs and KIT signaling dramatically increased FHL2 transcription while FHL2 inhibited KIT transcription. In addition, our results showed that FHL2 associated with KIT and increased the ubiquitination of both wild-type KIT and primary KIT mutants in GISTs, leading to decreased expression and activation of KIT although primary KIT mutants were less inhibited by FHL2 than wild-type KIT...
April 17, 2024: Molecular Carcinogenesis
https://read.qxmd.com/read/38604403/titin-s-cardiac-specific-n2b-element-is-critical-to-mechanotransduction-during-volume-overload-of-the-heart
#4
JOURNAL ARTICLE
Joshua Strom, Mathew Bull, Jochen Gohlke, Chandra Saripalli, Mei Methawasin, Michael Gotthardt, Henk Granzier
The heart has the ability to detect and respond to changes in mechanical load through a process called mechanotransduction. In this study, we focused on investigating the role of the cardiac-specific N2B element within the spring region of titin, which has been proposed to function as a mechanosensor. To assess its significance, we conducted experiments using N2B knockout (KO) mice and wildtype (WT) mice, subjecting them to three different conditions: 1) cardiac pressure overload induced by transverse aortic constriction (TAC), 2) volume overload caused by aortocaval fistula (ACF), and 3) exercise-induced hypertrophy through swimming...
April 9, 2024: Journal of Molecular and Cellular Cardiology
https://read.qxmd.com/read/38567377/collaborative-exercise-analysis-of-age-estimation-using-a-qiagen-protocol-and-the-pyromark-q48-platform
#5
JOURNAL ARTICLE
Marie-Louise Kampmann, Jan Fleckhaus, Claus Børsting, Helena Jurtikova, Alice Piters, Julien Papin, Quentin Gauthier, Mirna Ghemrawi, Christian Doutremepuich, Bruce McCord, Peter M Schneider, Jiri Drabek, Niels Morling
UNLABELLED: Human age estimation from trace samples may give important leads early in a police investigation by contributing to the description of the perpetrator. Several molecular biomarkers are available for the estimation of chronological age, and currently, DNA methylation patterns are the most promising. In this study, a QIAGEN age protocol for age estimation was tested by five forensic genetic laboratories. The assay comprised bisulfite treatment of the extracted DNA, amplification of five CpG loci (in the genes of ELOVL2 , C1orf132 , TRIM59 , KLF14 , and FHL2 ), and sequencing of the amplicons using the PyroMark Q48 platform...
March 2024: Forensic Sciences Research
https://read.qxmd.com/read/38547579/a-single-cell-characterised-signature-integrating-heterogeneity-and-microenvironment-of-lung-adenocarcinoma-for-prognostic-stratification
#6
JOURNAL ARTICLE
Jiachen Xu, Yundi Zhang, Man Li, Zhuo Shao, Yiting Dong, Qingqing Li, Hua Bai, Jianchun Duan, Jia Zhong, Rui Wan, Jing Bai, Xin Yi, Fuchou Tang, Jie Wang, Zhijie Wang
BACKGROUND: The high heterogeneity of tumour and the complexity of tumour microenvironment (TME) greatly impacted the tumour development and the prognosis of cancer in the era of immunotherapy. In this study, we aimed to portray the single cell-characterised landscape of lung adenocarcinoma (LUAD), and develop an integrated signature incorporating both tumour heterogeneity and TME for prognosis stratification. METHODS: Single-cell tagged reverse transcription sequencing (STRT-seq) was performed on tumour tissues and matched normal tissues from 14 patients with LUAD for immune landscape depiction and candidate key genes selection for signature construction...
March 27, 2024: EBioMedicine
https://read.qxmd.com/read/38512583/hsa-mir-92b-3p-targeting-fhl2-to-enhance-radiosensitivity-of-nasopharyngeal-carcinoma
#7
JOURNAL ARTICLE
Can Zeng, Shuangni Duan, Lin Zhao, Jing Jiang
Radiotherapy resistance is a major cause of treatment failure and leads to poor prognosis in nasopharyngeal carcinoma (NPC). Evidences indicate that microRNA (miRNAs) are closely associated with radiotherapy for NPC. In this study, we found that the expression level of miR-92b-3p was significantly higher in radiotherapy-sensitive NPC patients than in radiotherapy-resistant patients. High expression of miR-92b-3p was associated with good prognosis in patients with NPC, and high expression of FHL2 was associated with poor prognosis in patients with NPC...
March 21, 2024: Biochemical Genetics
https://read.qxmd.com/read/38507934/exposure-to-ambient-temperature-and-heat-index-in-relation-to-dna-methylation-age-a-population-based-study-in-taiwan
#8
JOURNAL ARTICLE
Kuan-Chih Chiu, Ming-Shun Hsieh, Yen-Tsung Huang, Chen-Yu Liu
BACKGROUND: Climate change caused an increase in ambient temperature in the past decades. Exposure to high ambient temperature could result in biological aging, but relevant studies in a warm environment were lacking. We aimed to study the exposure effects of ambient temperature and heat index (HI) in relation to age acceleration in Taiwan, a subtropical island in Asia. METHODS: The study included 2,084 participants from Taiwan Biobank. Daily temperature and relative humidity data were collected from weather monitoring stations...
March 17, 2024: Environment International
https://read.qxmd.com/read/38505066/promotion-of-non-small-cell-lung-cancer-tumor-growth-by-fhl2-via-inducing-angiogenesis-and-vascular-permeability
#9
JOURNAL ARTICLE
Tengfei Chen, Jun Chen, Qiuyun Chen, Zhipan Liang, Liuying Pan, Jun Zhao, Xiaowei She
BACKGROUND: Antiangiogenetic therapy is one of the effective strategies for non-small cell lung cancer (NSCLC) treatment. Four-and-a-half LIM-domain protein 2 ( FHL2 ) serves as a key function in cell growth and metastasis of multiple cancers, but the role of FHL2 in NSCLC angiogenesis has not been intensely examined. METHODS: FHL2 expression in NSCLC tissues and cell lines and its correlation with patients prognosis were investigated by using The Cancer Genome Atlas (TCGA) database and quantitative polymerase chain reaction (qPCR)...
February 29, 2024: Journal of Thoracic Disease
https://read.qxmd.com/read/38488745/strategies-to-deal-with-genetic-analyzer-specific-dna-methylation-measurements
#10
JOURNAL ARTICLE
Moon Hyun So, Ji Eun Lee, Hwan Young Lee
Targeted bisulfite sequencing using single-base extension (SBE) can be used to measure DNA methylation via capillary electrophoresis on genetic analyzers in forensic labs. Several accurate age prediction models have been reported using this method. However, using different genetic analyzers with different software settings can generate different methylation values, leading to significant errors in age prediction. To address this issue, the study proposes and compares four methods as follows: (1) adjusting methylation values using numerous actual body fluid DNA samples, (2) adjusting methylation values using control DNAs with varying methylation ratios, (3) constructing new age prediction models for each genetic analyzer type, and (4) constructing new age prediction models that could be applied to all types of genetic analyzers...
March 15, 2024: Electrophoresis
https://read.qxmd.com/read/38431640/fhl2b-mediates-extraocular-muscle-protection-in-zebrafish-models-of-muscular-dystrophies-and-its-ectopic-expression-ameliorates-affected-body-muscles
#11
JOURNAL ARTICLE
Nils Dennhag, Abraha Kahsay, Itzel Nissen, Hanna Nord, Maria Chermenina, Jiao Liu, Anders Arner, Jing-Xia Liu, Ludvig J Backman, Silvia Remeseiro, Jonas von Hofsten, Fatima Pedrosa Domellöf
In muscular dystrophies, muscle fibers loose integrity and die, causing significant suffering and premature death. Strikingly, the extraocular muscles (EOMs) are spared, functioning well despite the disease progression. Although EOMs have been shown to differ from body musculature, the mechanisms underlying this inherent resistance to muscle dystrophies remain unknown. Here, we demonstrate important differences in gene expression as a response to muscle dystrophies between the EOMs and trunk muscles in zebrafish via transcriptomic profiling...
March 2, 2024: Nature Communications
https://read.qxmd.com/read/38323374/fhl2-promotes-the-aggressiveness-of-lung-adenocarcinoma-by-inhibiting-autophagy-via-activation-of-the-pi3k-akt-mtor-pathway
#12
JOURNAL ARTICLE
Shuaishuai Wang, Baomo Liu, Yan Su, Nian Wang, Peixin Dong, Xiongye Xu, Lixia Huang, Shaoli Li, Jincui Gu, Yanli Qiu, Jiating Deng, Ziying Lin, Yanbin Zhou
BACKGROUND: Increasing evidence indicates that four and a half LIM domains 2 (FHL2) plays a crucial role in the progression of various cancers. However, the biological functions and molecular mechanism of FHL2 in lung adenocarcinoma (LUAD) remain unclear. METHODS: We evaluated the prognostic value of FHL2 in LUAD using public datasets and further confirmed its prognostic value with our clinical data. The biological functions of FHL2 in LUAD were evaluated by in vitro and in vivo experiments...
February 7, 2024: Thoracic Cancer
https://read.qxmd.com/read/38308398/epigenetic-based-age-prediction-in-blood-samples-model-development
#13
JOURNAL ARTICLE
Gonul Filoglu, Sumeyye Zulal Sımsek, Gokhan Ersoy, Kadriye Can, Ozlem Bulbul
Aging is a complex process influenced by genetic, epigenetic, and environmental factors that lead to tissue deterioration and frailty. Epigenetic mechanisms, such as DNA methylation, play a significant role in gene expression regulation and aging. This study presents a new age estimation model developed for the Turkish population using blood samples. Eight CpG sites in loci TOM1L1, ELOVL2, ASPA, FHL2, C1orf132, CCDC102B, cg07082267, and RASSF5 were selected based on their correlation with age. Methylation patterns of these sites were analyzed in blood samples from 100 volunteers, grouped into age categories (20-35, 36-55, and ≥56)...
February 2, 2024: Journal of Forensic Sciences
https://read.qxmd.com/read/38306418/precise-crispr-cas9-gene-repair-in-autologous-memory-t-cells-to-treat-familial-hemophagocytic-lymphohistiocytosis
#14
JOURNAL ARTICLE
Xun Li, Tristan Wirtz, Timm Weber, Mikhail Lebedin, Elijah D Lowenstein, Thomas Sommermann, Andreas Zach, Tomoharu Yasuda, Kathrin de la Rosa, Van Trung Chu, Johannes H Schulte, Ingo Müller, Christine Kocks, Klaus Rajewsky
Familial hemophagocytic lymphohistiocytosis (FHL) is an inherited, often fatal immune deficiency characterized by severe systemic hyperinflammation. Although allogeneic bone marrow transplantation can be curative, more effective therapies are urgently needed. FHL is caused by inactivating mutations in proteins that regulate cellular immunity. Here, we used an adeno-associated virus-based CRISPR-Cas9 system with an inhibitor of nonhomologous end joining to repair such mutations in potentially long-lived T cells ex vivo...
February 2, 2024: Science Immunology
https://read.qxmd.com/read/38304464/salivary-cardiac-enriched-fhl2-interacting-protein-is-associated-with-higher-diastolic-to-systolic-blood-pressure-ratio-sedentary-time-and-center-of-pressure-displacement-in-healthy-7-9-years-old-school-children
#15
JOURNAL ARTICLE
Fidanka Vasileva, Raquel Font-Lladó, Gemma Carreras-Badosa, Blanca Roman-Viñas, Aïda Cadellans-Arróniz, Abel López-Bermejo, Anna Prats-Puig
INTRODUCTION: Cardiac-enriched FHL2-interacting protein (CEFIP) is a recently identified protein, first found in the z-disc of striated muscles, and related to cardiovascular diseases. Our objectives are: 1) to quantify CEFIP in saliva in healthy 7-9 years old school-children; and 2) to assess the associations of salivary CEFIP concentration and blood pressure, physical (in)activity and physical fitness in these children. METHODS: A total of 72 children (7.6 ± 0...
2024: Frontiers in Endocrinology
https://read.qxmd.com/read/38301433/predicting-age-from-blood-by-droplet-digital-pcr-using-a-set-of-three-dna-methylation-markers
#16
JOURNAL ARTICLE
Helena Correia Dias, Licínio Manco
Evaluation of DNA methylation (DNAm) patterns is a promising tool for age estimation. The duplex droplet digital PCR (ddPCR) method has been recently investigated for DNAm evaluation, revealing to be a potential methodology for DNAm evaluation and molecular age estimation. In this study, we evaluated DNAm levels of CpGs located at the three age-associated genes ELOVL2, FHL2 and PDE4C using ddPCR to develop an age prediction model. Blood-derived DNA samples from 58 healthy individuals (42 women and 16 men; aged 1-93 years old) were submitted to bisulfite conversion followed by ddPCR using dual-labeled probes targeting methylated and unmethylated DNA sequences...
January 28, 2024: Forensic Science International
https://read.qxmd.com/read/38275209/epigenetic-age-prediction-using-costal-cartilage-for-the-investigation-of-disaster-victims-and-missing-persons
#17
JOURNAL ARTICLE
Ju Yeon Jung, Moon Hyun So, Kyu-Sik Jeong, Sang-In Kim, Eun Jin Kim, Ji Hwan Park, Eungsoo Kim, Hwan Young Lee
The DNA intelligence tool, DNA methylation-based age prediction, can help identify disaster victims and suspects in criminal investigations. In this study, we developed a costal cartilage-based age prediction tool that uses massive parallel sequencing (MPS) of age-associated DNA methylation markers. Costal cartilage samples were obtained from 85 deceased Koreans, aged between 26 and 89 years. An MPS library was prepared using two rounds of multiplex polymerase chain reaction of nine genes (TMEM51, MIR29B2CHG, EDARADD, FHL2, TRIM59, ELOVL2, KLF14, ASPA, and PDE4C)...
January 26, 2024: Journal of Forensic Sciences
https://read.qxmd.com/read/38256009/estimation-of-human-chronological-age-from-buccal-swab-samples-through-a-dna-methylation-analysis-approach-of-a-five-locus-multiple-regression-model
#18
JOURNAL ARTICLE
Beatrice Marcante, Arianna Delicati, Martina Onofri, Pamela Tozzo, Luciana Caenazzo
Recent advancements in forensic genetics have facilitated the extraction of additional characteristics from unidentified samples. This study delves into the predictive potential of a five-gene ( ELOVL2 , FHL2 , KLF14 , C1orf132 , and TRIM59 ) methylation rate analysis for human age estimation using buccal swabs collected from 60 Italian volunteers. The methylation levels of specific CpG sites in the five genes were analyzed through bisulfite conversion, single-base extension, and capillary electrophoresis. A multivariate linear regression model was crafted on the training set, then the test set was employed to validate the predictive model...
January 11, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38203523/-fhl2-inhibits-sars-cov-2-replication-by-enhancing-ifn-%C3%AE-expression-through-regulating-irf-3
#19
JOURNAL ARTICLE
Zhiqiang Xu, Mingyao Tian, Qihan Tan, Pengfei Hao, Zihan Gao, Chang Li, Ningyi Jin
SARS-CoV-2 triggered the global COVID-19 pandemic, posing a severe threat to public health worldwide. The innate immune response in cells infected by SARS-CoV-2 is primarily orchestrated by type I interferon (IFN), with IFN-β exhibiting a notable inhibitory impact on SARS-CoV-2 replication. FHL2 , acting as a docking site, facilitates the assembly of multiprotein complexes and regulates the transcription of diverse genes. However, the association between SARS-CoV-2 and FHL2 remains unclear. In this study, we report for the first time that SARS-CoV-2 infection in Caco2 cells results in the upregulation of FHL2 expression, while the virus's N proteins can enhance FHL2 expression...
December 26, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/38183876/unraveling-the-role-of-the-fhl-family-in-cardiac-diseases-mechanisms-implications-and-future-directions
#20
REVIEW
Tongbing Qi, Jingwen Zhang, Kexin Zhang, Wenqiang Zhang, Yixin Song, Kexin Lian, Chengxia Kan, Fang Han, Ningning Hou, Xiaodong Sun
Heart diseases are a major cause of morbidity and mortality worldwide. Understanding the molecular mechanisms underlying these diseases is essential for the development of effective diagnostic and therapeutic strategies. The FHL family consists of five members: FHL1, FHL2, FHL3, FHL4, and FHL5/Act. These members exhibit different expression patterns in various tissues including the heart. FHL family proteins are implicated in cardiac remodeling, regulation of metabolic enzymes, and cardiac biomechanical stress perception...
January 3, 2024: Biochemical and Biophysical Research Communications
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