keyword
https://read.qxmd.com/read/38654216/modulating-dna-damage-response-in-uveal-melanoma-through-embryonic-stem-cell-microenvironment
#1
JOURNAL ARTICLE
Yingxu Zhang, Jinbiao Zheng, Minyu Chen, Shulun Zhao, Ruiqian Ma, Wenwei Chen, Jiahui Liu
BACKGROUND: Uveal melanoma (UVM) is the most common primary intraocular tumor in adults, with a median survival of 4-5 months following metastasis. DNA damage response (DDR) upregulation in UVM, which could be linked to its frequent activation of the PI3K/AKT pathway, contributes to its treatment resistance. We have reported that embryonic stem cell microenvironments (ESCMe) can revert cancer cells to less aggressive states through downregulation of the PI3K signaling, showing promise in modulating the DDR of UVM...
April 24, 2024: BMC Cancer
https://read.qxmd.com/read/38652747/c-di-amp-determines-the-hierarchical-organization-of-bacterial-rck-proteins
#2
JOURNAL ARTICLE
Rita Rocha, João M P Jorge, Celso M Teixeira-Duarte, Inês R Figueiredo-Costa, Tatiana B Cereija, Paula F Ferreira-Teixeira, Christina Herzberg, Jörg Stülke, João H Morais-Cabral
In bacteria, intracellular K+ is involved in the regulation of membrane potential, cytosolic pH, and cell turgor as well as in spore germination, environmental adaptation, cell-to-cell communication in biofilms, antibiotic sensitivity, and infectivity. The second messenger cyclic-di-AMP (c-di-AMP) has a central role in modulating the intracellular K+ concentration in many bacterial species, controlling transcription and function of K+ channels and transporters. However, our understanding of how this regulatory network responds to c-di-AMP remains poor...
April 30, 2024: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/38652659/hsv-1-employs-ul56-to-antagonize-expression-and-function-of-cgamp-channels
#3
JOURNAL ARTICLE
Henry T W Blest, Alexander Redmond, Jed Avissar, Jake Barker, Anne Bridgeman, Gerissa Fowler, Lise Chauveau, Jonny Hertzog, Iolanda Vendrell, Roman Fischer, Marie B Iversen, Lichen Jing, David M Koelle, Søren R Paludan, Benedikt M Kessler, Colin M Crump, Jan Rehwinkel
DNA sensing is important for antiviral immunity. The DNA sensor cGAS synthesizes 2'3'-cyclic GMP-AMP (cGAMP), a second messenger that activates STING, which induces innate immunity. cGAMP not only activates STING in the cell where it is produced but cGAMP also transfers to other cells. Transporters, channels, and pores (including SLC19A1, SLC46A2, P2X7, ABCC1, and volume-regulated anion channels (VRACs)) release cGAMP into the extracellular space and/or import cGAMP. We report that infection with multiple human viruses depletes some of these cGAMP conduits...
April 22, 2024: Cell Reports
https://read.qxmd.com/read/38651236/signalling-switches-maintain-intercellular-communication-in-the-vascular-endothelium
#4
JOURNAL ARTICLE
Charlotte Buckley, Matthew D Lee, Xun Zhang, Calum Wilson, John G McCarron
BACKGROUND AND PURPOSE: The single layer of cells lining all blood vessels, the endothelium, is a sophisticated signal co-ordination centre that controls a wide range of vascular functions including the regulation of blood pressure and blood flow. To co-ordinate activities, communication among cells is required for tissue level responses to emerge. While a significant form of communication occurs by the propagation of signals between cells, the mechanism of propagation in the intact endothelium is unresolved...
April 23, 2024: British Journal of Pharmacology
https://read.qxmd.com/read/38649796/increasing-fluid-viscosity-ensures-consistent-single-cell-encapsulation
#5
JOURNAL ARTICLE
Emile Pranauskaite, Valdemaras Milkus, Justas Ritmejeris, Rapolas Zilionis, Linas Mazutis
High-throughput single-cell analysis typically relies on the isolation of cells of interest in separate compartments for subsequent phenotypic or genotypic characterization. Using microfluidics, this is achieved by isolating individual cells in microdroplets or microwells. However, due to cell-to-cell variability in size, shape, and density, the cell capture efficiencies may vary significantly. This variability can negatively impact the measurements and introduce undesirable artifacts when trying to isolate and characterize heterogeneous cell populations...
April 22, 2024: Analytical Chemistry
https://read.qxmd.com/read/38649185/combining-sophisticated-fast-flim-confocal-microscopy-and-sted-nanoscopy-for-live-cell-imaging-of-tunneling-nanotubes
#6
JOURNAL ARTICLE
Magalie Bénard, Christophe Chamot, Damien Schapman, Aurélien Debonne, Alexis Lebon, Fatéméh Dubois, Guénaëlle Levallet, Hitoshi Komuro, Ludovic Galas
Cell-to-cell communication via tunneling nanotubes (TNTs) is a challenging topic with a growing interest. In this work, we proposed several innovative tools that use red/near-infrared dye labeling and employ lifetime-based imaging strategies to investigate the dynamics of TNTs in a living mesothelial H28 cell line that exhibits spontaneously TNT1 and TNT2 subtypes. Thanks to a fluorescence lifetime imaging microscopy module being integrated into confocal microscopy and stimulated emission depletion nanoscopy, we applied lifetime imaging, lifetime dye unmixing, and lifetime denoising techniques to perform multiplexing experiments and time-lapses of tens of minutes, revealing therefore structural and functional characteristics of living TNTs that were preserved from light exposure...
July 2024: Life Science Alliance
https://read.qxmd.com/read/38645348/fibrillar-alpha-synuclein-alters-the-intracellular-chaperone-levels-within-hours-of-its-internalization
#7
JOURNAL ARTICLE
Tugay Çamoğlu, Zuhal Yurttaş, Ümit Yaşar Kına, Pınar Akkuş Süt, Fikrettin Sahin, Erdinç Dursun, Duygu Gezen-Ak
Parkinson's disease (PD) is the second most prevalent neurodegenerative disorder worldwide. According to the Braak hypothesis, the disease spreads along specific neuroanatomical pathways. Studies indicate that fibrillar alpha-synuclein (F-αSyn) can propagate from cell-to-cell by following intercellular connections, leading to the selective death of certain cell groups like substantia nigra dopaminergic neurons and advancing the pathology. Internalized F-αSyn can be eliminated by lysosomes, proteasomes, or chaperones before it replicates inside the cell...
April 16, 2024: ACS Omega
https://read.qxmd.com/read/38645203/mechanical-stress-through-growth-on-stiffer-substrates-impacts-animal-health-and-longevity-in-c-elegans
#8
Maria Oorloff, Adam Hruby, Maxim Averbukh, Athena Alcala, Naibedya Dutta, Toni Castro Torres, Darius Moaddeli, Matthew Vega, Juri Kim, Andrew Bong, Aeowynn J Coakley, Daniel Hicks, Jing Wang, Tiffany Wang, Sally Hoang, Kevin M Tharp, Gilberto Garcia, Ryo Higuchi-Sanabria
Mechanical stress is a measure of internal resistance exhibited by a body or material when external forces, such as compression, tension, bending, etc. are applied. The study of mechanical stress on health and aging is a continuously growing field, as major changes to the extracellular matrix and cell-to-cell adhesions can result in dramatic changes to tissue stiffness during aging and diseased conditions. For example, during normal aging, many tissues including the ovaries, skin, blood vessels, and heart exhibit increased stiffness, which can result in a significant reduction in function of that organ...
April 12, 2024: bioRxiv
https://read.qxmd.com/read/38644788/neuropeptidomics-of-the-american-lobster-homarus-americanus
#9
JOURNAL ARTICLE
Gaoyuan Lu, Vu Ngoc Huong Tran, Wenxin Wu, Min Ma, Lingjun Li
The American lobster, Homarus americanus , is not only of considerable economic importance but has also emerged as a premier model organism in neuroscience research. Neuropeptides, an important class of cell-to-cell signaling molecules, play crucial roles in a wide array of physiological and psychological processes. Leveraging the recently sequenced high-quality draft genome of the American lobster, our study sought to profile the neuropeptidome of this model organism. Employing advanced mass spectrometry techniques, we identified 24 neuropeptide precursors and 101 unique mature neuropeptides in Homarus americanus ...
April 22, 2024: Journal of Proteome Research
https://read.qxmd.com/read/38643747/ros-are-universal-cell-to-cell-stress-signals
#10
REVIEW
María Ángeles Peláez-Vico, Yosef Fichman, Sara I Zandalinas, Christine H Foyer, Ron Mittler
The interplay between reactive oxygen species (ROS) and the redox state of cells is deeply rooted in the biology of almost all organisms, regulating development, growth, and responses to the environment. Recent studies revealed that the ROS levels and redox state of one cell can be transmitted, as an information 'state' or 'currency', to other cells and spread by cell-to-cell communication within an entire community of cells or an organism. Here, we discuss the different pathways that mediate cell-to-cell signaling in plants, their hierarchy, and the different mechanisms that transmit ROS/redox signaling between different cells...
April 20, 2024: Current Opinion in Plant Biology
https://read.qxmd.com/read/38643383/model-fusion-for-predicting-unconventional-proteins-secreted-by-exosomes-using-deep-learning
#11
JOURNAL ARTICLE
Yonglin Zhang, Lezheng Yu, Ming Yang, Bin Han, Jiesi Luo, Runyu Jing
Unconventional secretory proteins (USPs) are vital for cell-to-cell communication and are necessary for proper physiological processes. Unlike classical proteins that follow the conventional secretory pathway via the Golgi apparatus, these proteins are released using unconventional pathways. The primary modes of secretion for USPs are exosomes and ectosomes, which originate from the endoplasmic reticulum. Accurate and rapid identification of exosome-mediated secretory proteins is crucial for gaining valuable insights into the regulation of non-classical protein secretion and intercellular communication, as well as for the advancement of novel therapeutic approaches...
April 21, 2024: Proteomics
https://read.qxmd.com/read/38640929/burkholderia-thailandensis-uses-a-type-vi-secretion-system-to-lyse-protrusions-without-triggering-host-cell-responses
#12
JOURNAL ARTICLE
Miro Thorsten Wilhelm Plum, Hoi Ching Cheung, Patricia Reist Iscar, Yahua Chen, Yunn-Hwen Gan, Marek Basler
To spread within a host, intracellular Burkholderia form actin tails to generate membrane protrusions into neighboring host cells and use type VI secretion system-5 (T6SS-5) to induce cell-cell fusions. Here, we show that B. thailandensis also uses T6SS-5 to lyse protrusions to directly spread from cell to cell. Dynamin-2 recruitment to the membrane near a bacterium was followed by a short burst of T6SS-5 activity. This resulted in the polymerization of the actin of the newly invaded host cell and disruption of the protrusion membrane...
April 16, 2024: Cell Host & Microbe
https://read.qxmd.com/read/38631144/the-novel-insights-of-epithelial-derived-exosomes-in-various-fibrotic-diseases
#13
REVIEW
Rifu Wang, Yuxin Shi, Yonglin Lv, Changqing Xie, Yanjia Hu
The characteristics of fibrosis include the abnormal accumulation of extracellular matrix proteins and abnormal tissue repair caused by injury, infection, and inflammation, leading to a significant increase in organ failure and mortality. Effective and precise treatments are urgently needed to halt and reverse the progression of fibrotic diseases. Exosomes are tiny vesicles derived from endosomes, spanning from 40 to 160 nanometers in diameter, which are expelled into the extracellular matrix environment by various cell types...
April 16, 2024: Biomedicine & Pharmacotherapy
https://read.qxmd.com/read/38630812/topology-guided-polar-ordering-of-collective-cell-migration
#14
JOURNAL ARTICLE
Emma Lång, Anna Lång, Pernille Blicher, Torbjørn Rognes, Paul Gunnar Dommersnes, Stig Ove Bøe
The ability of epithelial monolayers to self-organize into a dynamic polarized state, where cells migrate in a uniform direction, is essential for tissue regeneration, development, and tumor progression. However, the mechanisms governing long-range polar ordering of motility direction in biological tissues remain unclear. Here, we investigate the self-organizing behavior of quiescent epithelial monolayers that transit to a dynamic state with long-range polar order upon growth factor exposure. We demonstrate that the heightened self-propelled activity of monolayer cells leads to formation of vortex-antivortex pairs that undergo sequential annihilation, ultimately driving the spread of long-range polar order throughout the system...
April 19, 2024: Science Advances
https://read.qxmd.com/read/38627986/programmable-enzymatic-reaction-network-in-artificial-cell-like-polymersomes
#15
JOURNAL ARTICLE
Hanjin Seo, Hyomin Lee
The ability to precisely control in vitro enzymatic reactions in synthetic cells plays a crucial role in the bottom-up design of artificial cell models that can recapitulate the key cellular features and functions such as metabolism. However, integration of enzymatic reactions has been limited to bulk or microfluidic emulsions without a membrane, lacking the ability to design more sophisticated higher-order artificial cell communities for reconstituting spatiotemporal biological information at multiple length scales...
April 16, 2024: Advanced Science (Weinheim, Baden-Wurttemberg, Germany)
https://read.qxmd.com/read/38626210/network-neuron-interactions-underlying-sensory-responses-of-layer-5-pyramidal-tract-neurons-in-barrel-cortex
#16
JOURNAL ARTICLE
Arco Bast, Rieke Fruengel, Christiaan P J de Kock, Marcel Oberlaender
Neurons in the cerebral cortex receive thousands of synaptic inputs per second from thousands of presynaptic neurons. How the dendritic location of inputs, their timing, strength, and presynaptic origin, in conjunction with complex dendritic physiology, impact the transformation of synaptic input into action potential (AP) output remains generally unknown for in vivo conditions. Here, we introduce a computational approach to reveal which properties of the input causally underlie AP output, and how this neuronal input-output computation is influenced by the morphology and biophysical properties of the dendrites...
April 16, 2024: PLoS Computational Biology
https://read.qxmd.com/read/38626007/egfr-dependent-endocytosis-of-wnt9a-and-fzd9b-promotes-%C3%AE-catenin-signaling-during-hematopoietic-stem-cell-development-in-zebrafish
#17
JOURNAL ARTICLE
Nicole Nguyen, Kelsey A Carpenter, Jessica Ensing, Carla Gilliland, Emma J Rudisel, Emily M Mu, Kate E Thurlow, Timothy J Triche, Stephanie Grainger
Cell-to-cell communication through secreted Wnt ligands that bind to members of the Frizzled (Fzd) family of transmembrane receptors is critical for development and homeostasis. Wnt9a signals through Fzd9b, the co-receptor LRP5 or LRP6 (LRP5/6), and the epidermal growth factor receptor (EGFR) to promote early proliferation of zebrafish and human hematopoietic stem cells during development. Here, we developed fluorescently labeled, biologically active Wnt9a and Fzd9b fusion proteins to demonstrate that EGFR-dependent endocytosis of the ligand-receptor complex was required for signaling...
April 16, 2024: Science Signaling
https://read.qxmd.com/read/38622884/single-cell-and-bulk-rna-sequencing-reveal-spp1-and-cxcl12-as-cell-to-cell-communication-markers-to-predict-prognosis-in-lung-adenocarcinoma
#18
JOURNAL ARTICLE
Zengtuan Xiao, Zhe Nian, Mengzhe Zhang, Zuo Liu, Pengpeng Zhang, Zhenfa Zhang
Lung adenocarcinoma (LUAD) generally presents as an immunosuppressive microenvironment. The characteristics of cell-to-cell communication in the LUAD microenvironment has been unclear. In this study, the LUAD bulk RNA-seq data and single-cell RNA-seq data were retrieved from public dataset. Differential expression genes (DEGs) between LUAD tumor and adjacent non-tumor tissues were calculated by limma algorithm, and then detected by PPI, KEGG, and GO analysis. Cell-cell interactions were explored using the single-cell RNA-seq data...
April 15, 2024: Environmental Toxicology
https://read.qxmd.com/read/38619090/bacterial-pathogenesis-assessment-of-intracellular-positioning-of-pathogen-containing-vacuoles-during-infection
#19
JOURNAL ARTICLE
Farah Nasser, Mosopefoluwa T Oke, Sara Knezevic, Vanessa M D'Costa
Intracellular bacterial pathogens implement a diverse array of strategies to target host cells and establish infection. For vacuolar pathogens, the process of pathogen-containing vacuole movement within host cells, termed intracellular trafficking, is central to both pathogen survival and infection progression. Typically a process mediated by secreted virulence factors that manipulate the host cytoskeletal machinery, internalized pathogen-containing vacuoles traffic to the site of replication to establish a unique replicative niche, and if applicable, traffic back toward the host cell periphery for cell-to-cell spread...
April 2024: Current protocols
https://read.qxmd.com/read/38617354/seeding-competent-tdp-43-persists-in-human-patient-and-mouse-muscle
#20
Eileen M Lynch, Sara Pittman, Jil Daw, Chiseko Ikenaga, Sheng Chen, Dhruva D Dhavale, Meredith E Jackrel, Yuna M Ayala, Paul Kotzbauer, Cindy V Ly, Alan Pestronk, Thomas E Lloyd, Conrad C Weihl
UNLABELLED: TAR DNA-binding protein 43 (TDP-43) is an RNA binding protein that accumulates as aggregates in the central nervous system of some neurodegenerative diseases. However, TDP-43 aggregation is also a sensitive and specific pathologic feature found in a family of degenerative muscle diseases termed inclusion body myopathy (IBM). TDP-43 aggregates from ALS and FTD brain lysates may serve as self-templating aggregate seeds in vitro and in vivo, supporting a prion-like spread from cell to cell...
April 4, 2024: bioRxiv
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