keyword
https://read.qxmd.com/read/38599816/-application-and-optimization-of-crispri-to-the-biology-of-mycobacterium-tuberculosis
#1
JOURNAL ARTICLE
T H U T H U Y Le, Y Huang, J P Xie
Tuberculosis, caused by infection with Mycobacterium tuberculosis (MTB), remains a global public health challenge. Multidrug-resistant tuberculosis (MDR-TB) and extensively drug-resistant tuberculosis (XDR-TB) strains make tuberculosis more difficult to control. New tools to study the biology of MTB can identify novel targets for drug discovery. Recently, the Clustered Regularly Interspaced Short Palindromic Repeats interference (CRISPRi) combined with next-generation sequencing has provided many novel insights into the physiology and genetics of MTB...
April 12, 2024: Chinese Journal of Tuberculosis and Respiratory Diseases
https://read.qxmd.com/read/38597637/whole-genome-sequencing-of-clinical-isolates-from-tuberculosis-patients-in-india-real-world-data-indicates-a-high-proportion-of-pre-xdr-cases
#2
JOURNAL ARTICLE
Aparna Bhanushali, Sachin Atre, Preethi Nair, Geethanjali Anilkumar Thandaseery, Sanchi Shah, Sanjana Kuruwa, Amrutraj Zade, Chaitali Nikam, Mangala Gomare, Anirvan Chatterjee
UNLABELLED: Treatment decisions for tuberculosis (TB) in the absence of full drug-susceptibility data can result in amplifying resistance and may compromise treatment outcomes. Genomics of Mycobacterium tuberculosis ( M.tb ) from clinical samples enables detection of drug resistance to multiple drugs. We performed whole-genome sequencing (WGS) for 600 clinical samples from patients with tuberculosis to identify the drug-resistance profile and mutation spectrum. We documented the reasons reported by clinicians for referral...
April 10, 2024: Microbiology Spectrum
https://read.qxmd.com/read/38571639/a-pregnant-woman-with-pre-xdr-ptb-giving-birth-to-a-healthy-newborn-a-case-report
#3
Lei Wang, Xin Zhang, Weiyang Wang, Fuli Huang
We reported a late-pregnancy woman with pre-XDR PTB who had not received regular anti-tuberculosis treatment prior to delivery. Despite this, she successfully delivered a premature baby who exhibited normal growth and development, and subsequently completed her anti-tuberculosis treatment. This report suggests that delayed treatment for pre-XDR TB during late pregnancy does not necessarily increase the risk of treatment failure for the mother or the risk of neonatal tuberculosis.
April 15, 2024: Heliyon
https://read.qxmd.com/read/38556907/the-clinical-profile-and-outcomes-of-drug-resistant-tuberculosis-in-central-province-of-zambia
#4
JOURNAL ARTICLE
Evaristo Chanda
BACKGROUND: The emergence of Drug Resistant Tuberculosis (DR-TB) is one of the main public health and economic problems facing the world today. DR-TB affects mostly those in economically productive years and prevents them from being part of the workforce needed for economic growth. The aim of this study was to determine the Clinical Profile and Outcomes of DR-TB in Central Province of Zambia. METHODS: This was a retrospective cross sectional study that involved a review of records of patients with confirmed DR-TB who were managed at Kabwe Central Hospital's Multi-Drug Resistant TB (MDR-TB) Ward from the year 2017 to 2021...
April 1, 2024: BMC Infectious Diseases
https://read.qxmd.com/read/38547569/utilization-of-truenat-chips-in-defining-xdr-pre-xdr-and-mdr-in-tuberculous-meningitis
#5
JOURNAL ARTICLE
Kusum Sharma, Megha Sharma, Ritu Shree, Neeraj Singla, Himanshu Joshi, Tanish Modi, Manoj Goyal, Aman Sharma, Navneet Sharma, Manish Modi
SETTING AND OBJECTIVE: To develop and evaluate newer molecular tests that identify drug resistance according to contemporary definitions in Tuberculous meningitis (TBM), the most severe form of EPTB. DESIGN: 93 cerebrospinal fluid (CSF) specimens [41 culture-positive and 52 culture-negative], were subjected to Truenat MTB Plus assay along with chips for rifampicin, isoniazid, fluoroquinolones and bedaquiline resistance. The performance was compared against phenotypic drug susceptibility testing (pDST), Line probe assay (LPA) and gene sequencing...
March 24, 2024: Tuberculosis
https://read.qxmd.com/read/38532808/large-scale-pan-genomic-analysis-of-mycobacterium-tuberculosis-reveals-key-insights-into-molecular-evolutionary-rate-of-specific-processes-and-functions
#6
JOURNAL ARTICLE
Eshan Bundhoo, Anisah W Ghoorah, Yasmina Jaufeerally-Fakim
Mycobacterium tuberculosis (Mtb) is the causative agent of tuberculosis (TB), an infectious disease that is a major killer worldwide. Due to selection pressure caused by the use of antibacterial drugs, Mtb is characterised by mutational events that have given rise to multi drug resistant (MDR) and extensively drug resistant (XDR) phenotypes. The rate at which mutations occur is an important factor in the study of molecular evolution, and it helps understand gene evolution. Within the same species, different protein-coding genes evolve at different rates...
2024: Evolutionary Bioinformatics Online
https://read.qxmd.com/read/38532759/closure-of-tb-pulmonary-cavern-using-endobronchial-valve-placement
#7
Teona Mskhaladze, David Tchkonia, Kakha Vacharadze, Nana Kiria, Mikolay Chkonia
INTRODUCTION: Enhancing the efficacy of treatment for Multi-Drug Resistant (MDR) and Extensively Drug Resistant (XDR) Tuberculosis has prompted exploration into adjunctive therapies, such as Endobronchial Valve Placement (EVP) in addition to pharmacological interventions. MATERIALS AND METHODS: EVP was performed utilizing a combination of rigid and flexible bronchoscopes to address airway hemorrhage and facilitate closure of TB cavities. The procedure involved the deployment of large valves (12 mm and 17 mm), necessitating the utilization of a rigid bronchoscope...
March 2024: Oxford Medical Case Reports
https://read.qxmd.com/read/38526186/drug-resistant-tuberculosis-georgia-kazakhstan-kyrgyzstan-moldova-and-ukraine-2017-2022
#8
JOURNAL ARTICLE
Victor Naestholt Dahl, Tetiana Butova, Alex Rosenthal, Alina Grinev, Andrei Gabrielian, Sergo Vashakidze, Natalia Shubladze, Bekzat Toxanbayeva, Lyailya Chingissova, Valeriu Crudu, Dumitru Chesov, Gulmira Kalmambetova, Gulbarchyn Saparova, Christian Morberg Wejse, Dmytro Butov
In 2021, the World Health Organization recommended new extensively drug-resistant (XDR) and pre-XDR tuberculosis (TB) definitions. In a recent cohort of TB patients in Eastern Europe, we show that XDR TB as currently defined is associated with exceptionally poor treatment outcomes, considerably worse than for the former definition (31% vs. 54% treatment success).
April 2024: Emerging Infectious Diseases
https://read.qxmd.com/read/38523140/multidrug-resistant-tuberculosis
#9
REVIEW
Keertan Dheda, Fuad Mirzayev, Daniela Maria Cirillo, Zarir Udwadia, Kelly E Dooley, Kwok-Chiu Chang, Shaheed Vally Omar, Anja Reuter, Tahlia Perumal, C Robert Horsburgh, Megan Murray, Christoph Lange
Tuberculosis (TB) remains the foremost cause of death by an infectious disease globally. Multidrug-resistant or rifampicin-resistant TB (MDR/RR-TB; resistance to rifampicin and isoniazid, or rifampicin alone) is a burgeoning public health challenge in several parts of the world, and especially Eastern Europe, Russia, Asia and sub-Saharan Africa. Pre-extensively drug-resistant TB (pre-XDR-TB) refers to MDR/RR-TB that is also resistant to a fluoroquinolone, and extensively drug-resistant TB (XDR-TB) isolates are additionally resistant to other key drugs such as bedaquiline and/or linezolid...
March 24, 2024: Nature Reviews. Disease Primers
https://read.qxmd.com/read/38516786/tuberculosis-in-people-of-ukrainian-origin-in-the-european-union-and-the-european-economic-area-2019-to-2022
#10
JOURNAL ARTICLE
Krista Stoycheva, Veronica Cristea, Csaba Ködmön, Senia Rosales-Klintz, Dominik Zenner, Anca Vasiliu, Marieke van der Werf, Christoph Lange
Approximately five million Ukrainians were displaced to the EU/EEA following the Russian invasion of Ukraine. While tuberculosis (TB) notification rates per 100,000 Ukrainians in the EU/EEA remained stable, the number of notified TB cases in Ukrainians increased almost fourfold (mean 2019-2021: 201; 2022: 780). In 2022, 71% cases were notified in three countries, and almost 20% of drug-resistant TB cases were of Ukrainian origin. Targeted healthcare services for Ukrainians are vital for early diagnosis and treatment, and preventing transmission...
March 2024: Euro Surveillance
https://read.qxmd.com/read/38500964/prison-as-a-driver-of-recent-transmissions-of-multidrug-resistant-tuberculosis-in-callao-peru-a-cross-sectional-study
#11
JOURNAL ARTICLE
Christian Utpatel, Milagros Zavaleta, Daniel Rojas-Bolivar, Andreas Mühlbach, Janet Picoy, Walter Portugal, Ana Esteve-Solé, Laia Alsina, Paolo Miotto, Daniella C Bartholomeu, Jorge Sanchez, Diego F Cuadros, Jorge O Alarcon, Stefan Niemann, Moises A Huaman
BACKGROUND: We sought to identify resistance patterns and key drivers of recent multidrug-resistant tuberculosis (MDR-TB) transmission in a TB-prevalent area in Peru. METHODS: Cross-sectional study including MDR Mycobacterium tuberculosis complex (Mtbc) strains identified in Callao-Peru between April 2017 and February 2019. Mtbc DNA was extracted for whole genome sequencing which was used for phylogenetic inference, clustering, and resistance mutation analyses. Clusters indicative of recent transmission were defined based on a strain-to-strain distance of ≤5 (D5) single nucleotide polymorphisms (SNPs)...
March 2024: Lancet Reg Health Am
https://read.qxmd.com/read/38482355/targeted-genome-sequencing-for-tuberculosis-drug-susceptibility-testing-in-south-africa-a-proposed-diagnostic-pipeline
#12
REVIEW
Tayarv J Bagratee, David J Studholme
In July 2023, the World Health Organization (WHO) began recommending targeted next-generation sequencing (tNGS), due to its ability to detect resistance to many drugs with a single test. In March 2023, South Africa further adopted the GeneXpert XDR cartridge, which detects mutations associated with resistance to second-line injectable drugs. Here, we consider the feasibility for implementing tNGS in South Africa, what such a facility might look like and the specific context of this upper-middle-income country...
2024: Access microbiology
https://read.qxmd.com/read/38455612/profile-and-risk-factors-of-pre-xdr-tb-and-xdr-tb-patients-in-a-national-reference-hospital-for-sumatra-region-of-indonesia
#13
JOURNAL ARTICLE
Herison E Sinulingga, Bintang Ym Sinaga, Parluhutan Siagian, Taufik Ashar
The low treatment rate, low treatment success rate and high mortality rate of patients with pre-extensively drug-resistant tuberculosis (pre-XDR-TB) and extensively drug-resistant TB (XDR-TB) need serious attention. The aim of this study was to describe the profiles of patients with pre-XDR-TB and XDR-TB cases and to determine associated risk factors of their incidence in Indonesia. A retrospective case-control study was conducted at H. Adam Malik General Hospital in Medan, North Sumatra of which all sensitive-drug TB (SD-TB), pre-XDR-TB, and XDR-TB patients aged 18 years or older treated between October 2019 to June 2022 were included...
December 2023: Narra J
https://read.qxmd.com/read/38438500/in-vitro-and-ex-vivo-activity-of-the-fluoroquinolone-dc-159a-against-mycobacteria
#14
JOURNAL ARTICLE
Belén R Imperiale, María B Mancino, Roberto D Moyano, Silvia de la Barrera, Nora S Morcillo
Antimicrobial resistance is a global health problem. In 2021, it was estimated almost half a million of multidrug-resistant tuberculosis (MDR-TB) cases. Besides, non-tuberculous mycobacteria (NTM) are highly resistant to several drugs and the emergence of fluoroquinolone (FQ) resistant M. tuberculosis (Mtb) is also a global concern making treatments difficult and with variable outcome. The aim of this study was to evaluate the activity of the FQ, DC-159a, against Mtb and NTM and to explore the cross-resistance with the currently used FQs...
March 4, 2024: Journal of Antibiotics
https://read.qxmd.com/read/38390619/evaluation-of-sulfasalazine-as-an-adjunctive-therapy-in-treating-pulmonary-pre-xdr-tb-efficacy-safety-and-treatment-implication
#15
JOURNAL ARTICLE
Liang Fu, Wenfei Wang, Juan Xiong, Peize Zhang, Hui Li, Xilin Zhang, Hancheng Liang, Qianting Yang, Zhaoqin Wang, Xinchun Chen, Guofang Deng, Yi Cai, Shenjie Tang
BACKGROUND: The rising prevalence and limited efficacy of treatments for pre-extensively drug-resistant tuberculosis (pre-XDR-TB) underscore an immediate need for innovative therapeutic options. A combination of host-directed therapy (HDT) and anti-TB treatment presents a viable alternative for pre-XDR-TB management. Sulfasalazine (SASP), by targeting the amino acid transport system xc (xCT), potentially reduces the intracellular Mycobacterium tuberculosis load and mitigates lung pathology, positioning it as a promising TB HDT agent...
2024: Infection and Drug Resistance
https://read.qxmd.com/read/38385476/pangenomic-analyses-of-tuberculosis-strains-to-identify-resistomes-using-computational-approaches
#16
JOURNAL ARTICLE
Dur-E-Shahwar Tariq
OBJECTIVE: To locate resistomes in tuberculosis strains, to determine the severity of drug resistance, and to infer its implications with respect to high tuberculosis prevalence in a Third World setting. METHODS: The pangenomic study was conducted from October 2022 to January 2023 in Sir Syed University of Engineering and Technology, Karachi, and comprised 2012-22 data on multiple sequence alignment to assess the genetic evolution of tuberculosis strains. Antibiotic resistance drug classes were identified using the Canadian Antibiotic Resistance Database, which entailed multidrug-resistant and extremely drug-resistant strains...
February 2024: JPMA. the Journal of the Pakistan Medical Association
https://read.qxmd.com/read/38384306/transmission-dynamics-of-drug-resistant-tuberculosis-in-ningbo-china-an-epidemiological-and-genomic-analysis
#17
JOURNAL ARTICLE
Yang Che, Xiangchen Li, Tong Chen, Yewei Lu, Guoxin Sang, Junli Gao, Junshun Gao, Zhengwei Liu, Tianfeng He, Yi Chen
BACKGROUND: Tuberculosis (TB), particularly drug-resistant TB (DR-TB), remains a significant public health concern in Ningbo, China. Understanding its molecular epidemiology and spatial distribution is paramount for effective control. METHODS: From December 24, 2020, to March 12, 2023, we collected clinical Mycobacterium tuberculosis (MTB) strains in Ningbo, with whole-genome sequencing performed on 130 MTB strains. We analyzed DR-related gene mutations, conducted phylogenetic and phylodynamic analyses, identified recent transmission clusters, and assessed spatial distribution...
2024: Frontiers in Cellular and Infection Microbiology
https://read.qxmd.com/read/38367094/global-burden-of-mdr-tb-and-xdr-tb-attributable-to-high-fasting-plasma-glucose-from-1990-to-2019-a-retrospective-analysis-based-on-the-global-burden-of-disease-study-2019
#18
JOURNAL ARTICLE
Yuqian Chen, Jin Liu, Qianqian Zhang, Huan Chen, Limin Chai, Yan Wang, Jia Zhang, Yuanjie Qiu, Nirui Shen, Xiangyu Shi, Qingting Wang, Jian Wang, Shaojun Li, Manxiang Li
PURPOSE: High fasting plasma glucose (HFPG) has been identified as a risk factor for drug-resistant tuberculosis incidence and mortality. However, the epidemic characteristics of HFPG-attributable multidrug-resistant tuberculosis (MDR-TB) and extensively drug-resistant tuberculosis (XDR-TB) remain unclear. We aimed to analyze the global spatial patterns and temporal trends of HFPG-attributable MDR-TB and XDR-TB from 1990 to 2019. METHODS: Utilizing data from the Global Burden of Disease 2019 project, annual deaths and disability-adjusted life years (DALYs) of HFPG-attributable MDR-TB and XDR-TB were conducted from 1990 to 2019...
February 17, 2024: European Journal of Clinical Microbiology & Infectious Diseases
https://read.qxmd.com/read/38357663/integrative-analysis-of-multimodal-patient-data-identifies-personalized-predictors-of-tuberculosis-treatment-prognosis
#19
JOURNAL ARTICLE
Awanti Sambarey, Kirk Smith, Carolina Chung, Harkirat Singh Arora, Zhenhua Yang, Prachi P Agarwal, Sriram Chandrasekaran
Tuberculosis (TB) afflicted 10.6 million people in 2021, and its global burden is increasing due to multidrug-resistant TB (MDR-TB) and extensively resistant TB (XDR-TB). Here, we analyze multi-domain information from 5,060 TB patients spanning 10 countries with high burden of MDR-TB from the NIAID TB Portals database to determine predictors of TB treatment outcome. Our analysis revealed significant associations between radiological, microbiological, therapeutic, and demographic data modalities. Our machine learning model, built with 203 features across modalities outperforms models built using each modality alone in predicting treatment outcomes, with an accuracy of 83% and area under the curve of 0...
February 16, 2024: IScience
https://read.qxmd.com/read/38357296/bacprotacs-targeting-clp-protease-a-promising-strategy-for-anti-mycobacterial-drug-discovery
#20
JOURNAL ARTICLE
Andressa Francielli Bonjorno, Aline Renata Pavan, Guilherme F S Fernandes, Cauê Benito Scarim, Daniele Castagnolo, Jean Leandro Dos Santos
Tuberculosis (TB) has claimed more lives over the course of two millennia than any other infectious disease worldwide. In 2021, the World Health Organization (WHO) estimated that 10.6 million people were diagnosed with TB, resulting in the deaths of 1.4 million HIV-negative individuals. The emergence of multidrug-resistant TB (MDR-TB), defined as resistance to at least rifampicin (RIF) and isoniazid (INH), and extensively drug-resistant TB (XDR-TB), poses the primary challenge to overcome in the coming years...
2024: Frontiers in Chemistry
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