keyword
https://read.qxmd.com/read/38571790/population-genomics-provide-insight-into-ancestral-relationships-and-diversity-of-the-feral-horses-of-theodore-roosevelt-national-park
#1
JOURNAL ARTICLE
Melissa A Thompson, Blake E McCann, Turk Rhen, Rebecca Simmons
Theodore Roosevelt National Park (TRNP) manages a herd of feral horses ( Equus caballus ) which was present on the landscape prior to the establishment of the park. The population presents a unique scenario in that it has experienced fairly intensive and well-documented management since the park's establishment, including herd size reductions, intentional introduction of diversity, and subsequent attempts to remove introduced lineages. This provides an interesting case study on the genetic effects of diverse evolutionary forces on an isolated feral population...
April 2024: Ecology and Evolution
https://read.qxmd.com/read/38038477/hiv-1-active-and-latent-infections-induce-disparate-chromatin-reorganization-and-transcriptional-regulation-of-mrnas-and-lncrnas-in-supt1-cells
#2
JOURNAL ARTICLE
Gabrielle Lê-Bury, Yao Chen, Jordan M Rhen, Jennifer K Grenier, Amit Singhal, David G Russell, Saikat Boliar
HIV-1 infection of T-lymphocytes depends on co-opting cellular transcriptional and translational machineries for viral replication. This requires significant changes in the cellular microenvironment. We have characterized and compared the changes in cellular chromatin structures as well as gene expression landscapes in T cells that are either actively or latently infected with HIV-1. Our results reveal that chromatin accessibility and expression of both protein-coding mRNAs and non-coding lncRNAs are uniquely regulated in HIV-1-infected T cells, depending on whether the virus is actively transcribing or remains in a transcriptionally silent, latent state...
December 1, 2023: MBio
https://read.qxmd.com/read/37199156/endothelial-phactr1-promotes-endothelial-activation-and-atherosclerosis-by-repressing-ppar%C3%AE-activity-under-disturbed-flow-in-mice
#3
JOURNAL ARTICLE
Dongyang Jiang, Hao Liu, Guofu Zhu, Xiankai Li, Linlin Fan, Faxue Zhao, Chong Xu, Shumin Wang, Yara Rose, Jordan Rhen, Ze Yu, Yiheng Yin, Yuling Gu, Xiangbin Xu, Edward A Fisher, Junbo Ge, Yawei Xu, Jinjiang Pang
BACKGROUND: Numerous genome-wide association studies revealed that SNPs (single nucleotide polymorphisms) at the PHACTR1 (phosphatase and actin regulator 1) locus strongly correlate with coronary artery disease. However, the biological function of PHACTR1 remains poorly understood. Here, we identified the proatherosclerotic effect of endothelial PHACTR1, contrary to macrophage PHACTR1. METHODS: We generated global ( Phactr1-/- ) and endothelial cell (EC)-specific ( Phactr1ECKO ) Phactr1 KO (knockout) mice and crossed these mice with apolipoprotein E-deficient ( Apoe-/- ) mice...
August 2023: Arteriosclerosis, Thrombosis, and Vascular Biology
https://read.qxmd.com/read/37107787/reliability-and-validity-of-six-selected-observational-methods-for-risk-assessment-of-hand-intensive-and-repetitive-work
#4
JOURNAL ARTICLE
Teresia Nyman, Ida-Märta Rhén, Peter J Johansson, Kristina Eliasson, Katarina Kjellberg, Per Lindberg, Xuelong Fan, Mikael Forsman
Risk assessments of hand-intensive and repetitive work are commonly done using observational methods, and it is important that the methods are reliable and valid. However, comparisons of the reliability and validity of methods are hampered by differences in studies, e.g., regarding the background and competence of the observers, the complexity of the observed work tasks and the statistical methodology. The purpose of the present study was to evaluate six risk assessment methods, concerning inter- and intra-observer reliability and concurrent validity, using the same methodological design and statistical parameters in the analyses...
April 13, 2023: International Journal of Environmental Research and Public Health
https://read.qxmd.com/read/36462462/major-locus-on-eca18-influences-effectiveness-of-gonacon-vaccine-in-feral-horses
#5
JOURNAL ARTICLE
Melissa A Thompson, Blake E McCann, Rebecca B Simmons, Turk Rhen
Contraceptive vaccines are used to reduce birth rates in wild and feral animal populations. While the immunocontraceptive GonaCon-Equine has proven effective in reducing fertility among female feral horses, there is individual variation in the duration of infertility following treatment. To identify genetic factors influencing the effectiveness of GonaCon-Equine, we conducted a genome-wide association study of 88 mares from a feral population genotyped using the Illumina GGP Equine 70k SNP array. Contraceptive treatment schedules and long-term foaling rates have been recorded for each individual...
November 28, 2022: Journal of Reproductive Immunology
https://read.qxmd.com/read/36117547/an-optotracer-based-antibiotic-susceptibility-test-specifically-targeting-the-biofilm-lifestyle-of-salmonella
#6
JOURNAL ARTICLE
Johannes A Eckert, Ming Rosenberg, Mikael Rhen, Ferdinand X Choong, Agneta Richter-Dahlfors
Antimicrobial resistance is a medical threat of global dimensions. Proper antimicrobial susceptibility testing (AST) for drug development, patient diagnosis and treatment is crucial to counteract ineffective drug use and resistance development. Despite the important role of bacterial biofilms in chronic and device-associated infections, the efficacy of antibiotics is determined using planktonic cultures. To address the need for antibiotics targeting bacteria in the biofilm lifestyle, we here present an optotracing-based biofilm-AST using Salmonella as model...
December 2022: Biofilm
https://read.qxmd.com/read/35917697/mind-the-gap-development-of-conversion-models-between-accelerometer-and-imu-based-measurements-of-arm-and-trunk-postures-and-movements-in-warehouse-work
#7
JOURNAL ARTICLE
Mikael Forsman, Xuelong Fan, Ida-Märta Rhen, Carl Mikael Lind
Sensor type (accelerometers only versus inertial measurement units, IMUs) and angular velocity computational method (inclination versus generalized velocity) have been shown to affect the measurements of arm and trunk movements. This study developed models for conversions between accelerometer and IMU measurements of arm and trunk inclination and between accelerometer and IMU measurements of inclination and generalized (arm) velocities. Full-workday recordings from accelerometers and IMUs of arm and trunk postures and movements from 38 warehouse workers were used to develop 4 angular (posture) and 24 angular velocity (movement) conversion models for the distributions of the data...
July 30, 2022: Applied Ergonomics
https://read.qxmd.com/read/35412361/genome-sequences-of-14-siphophages-that-infect-serratia-marcescens
#8
JOURNAL ARTICLE
Emilee L Carr, McKay E Wilson, Stephen T Adams, Daniel K Arens, Moroni Ayala, Hayden Ayers, Austin Barker, Victoria Beecroft, Emily Bishop, Braden Brundage, Melany J Carroll, Jacob Chow, Hunter Cobbley, Rhen Davis, Christopher Fajardo, Samuel Flor, David Fuhriman, Rochelle Gaertner Tullis, Austen Gleave, Ciara Green, Tyler Hanis, Trevor Hoggan, Liam Johnson, Jared L Kruger, Andrew Lambert, Elvira Correa Lazaro, Emily Loertscher, Naomi Marshall, Elise Melhado, Riley Sarabia, Ruchira Sharma, Austin Steffensen, Jared B Stewart, Tyson Stoker, Andrew Swain, Simeon Toronto, Daniel W Thompson, J Zachary Todd, Jamison Walker, Andrew Wilkey, Derrek Wilson, Cynthia L Hallen, Sherwood R Casjens, Julianne H Grose
We announce the complete genome sequences of 14 Serratia bacteriophages isolated from wastewater treatment plants. These phages define two previously undescribed types which we call the Carrot-like phage cluster (phages Carrot, BigDog, LittleDog, Niamh, Opt-148, Opt-169, PhooPhighters, Rovert, Serratianator, Stoker, Swain, and Ulliraptor) and Tlacuache-like phage cluster (Tlacuache and Opt-155).
April 12, 2022: Microbiology Resource Announcements
https://read.qxmd.com/read/35315271/retraction-of-medium-and-large-n-heterocycle-formation-via-allene-hydroamination-with-a-bimetallic-rh-ii-catalyst
#9
Kelton G Forson, Benjamin O Bohman, Coriantumr Z Wayment, Rachel N Owens, Caitlyn E McKnight, Rhen C Davis, Lillian R Stillwell, Stacey J Smith, David J Michaelis
No abstract text is available yet for this article.
March 22, 2022: Journal of the American Chemical Society
https://read.qxmd.com/read/34965105/medium-and-large-n-heterocycle-formation-via-allene-hydroamination-with-a-bimetallic-rh-ii-catalyst
#10
JOURNAL ARTICLE
Kelton G Forson, Benjamin O Bohman, Coriantumr Z Wayment, Rachel N Owens, Caitlyn E McKnight, Rhen C Davis, Lillian R Stillwell, Stacey J Smith, David J Michaelis
We report the synthesis of a 2-phosphinoimidazole-derived bimetallic Rh(II) complex that enables intramolecular allene hydroamination to form 7- to 10-member rings in high yield. Monometallic Rh complexes, in contrast, fail to achieve any product formation. We demonstrate a broad substrate scope for formation of various N -heterocycles. Macrocyclizations that form 11- to 15-member N -heterocycles are also demonstrated. Mechanistic studies suggest that the reaction proceeds via reversible allene insertion with a Rh-hydride followed by C-N bond-forming reductive elimination...
December 29, 2021: Journal of the American Chemical Society
https://read.qxmd.com/read/34888928/sensitivity-of-a-model-reptile-the-common-snapping-turtle-chelydra-serpentina-to-in-ovo-exposure-to-tcdd-and-other-dioxin-like-chemicals
#11
JOURNAL ARTICLE
Jon A Doering, Markus Brinkmann, Maria Lucio, Serena Stoeck, Alex Vien, Stephanie Petersen, Turk Rhen, Paul D Jones, Markus Hecker, Anthony Schroeder
Reptiles represent the least studied group of vertebrates with regards to ecotoxicology and no empirical toxicity data existed for dioxin-like chemicals (DLCs). This lack of toxicity data represents a significant uncertainty in ecological risk assessments of this taxon. Therefore, the present study assessed early life sensitivity to select DLCs and developed relative potencies in the common snapping turtle (Chelydra serpentina) as a model reptile. Specifically, survival to hatch and incidence of pathologies was assessed in common snapping turtle exposed in ovo to serial concentrations of the prototypical reference congener, 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), and 3 other DLCs of environmental relevance, namely 2,3,4,7,8-pentachlorodibenzofuran (PeCDF), 2,3,7,8-tetrachlorodibenzofuran (TCDF), and 3,3',4,4',5-pentachlorobiphenyl (PCB 126)...
December 9, 2021: Environmental Toxicology and Chemistry
https://read.qxmd.com/read/34796471/a-novel-peptide-inhibitor-of-dll4-notch1-signalling-and-its-pro-angiogenic-functions
#12
JOURNAL ARTICLE
Guofu Zhu, Ying Lin, Tandi Ge, Shekhar Singh, Hao Liu, Linlin Fan, Shumin Wang, Jordan Rhen, Dongyang Jiang, Yuyan Lyu, Yiheng Yin, Xiankai Li, Danielle S W Benoit, Weiming Li, Yawei Xu, Jinjiang Pang
BACKGROUND AND PURPOSE: The Dll4-Notch1 signalling pathway plays an important role in sprouting angiogenesis, vascular remodelling and arterial or venous specificity. Genetic or pharmacological inhibition of Dll4-Notch1 signalling leads to excessive sprouting angiogenesis. However, transcriptional inhibitors of Dll4-Notch1 signalling have not been described. EXPERIMENTAL APPROACH: We designed a new peptide targeting Notch signalling, referred to as TAT-ANK, and assessed its effects on angiogenesis...
April 2022: British Journal of Pharmacology
https://read.qxmd.com/read/34739767/reduced-notch1-cleavage-promotes-the-development-of-pulmonary-hypertension
#13
JOURNAL ARTICLE
Shumin Wang, Guofu Zhu, Dongyang Jiang, Jordan Rhen, Xiankai Li, Hao Liu, Yuyan Lyu, Patrick Tsai, Yara Rose, Tiffany Nguyen, R James White, Gloria S Pryhuber, Thomas J Mariani, Chen Li, Amy Mohan, Yawei Xu, Jinjiang Pang
Clinical trials of Dll4 (Delta-like 4) neutralizing antibodies (Dll4nAbs) in cancer patients are ongoing. Surprisingly, pulmonary hypertension (PH) occurs in 14% to 18% of patients treated with Dll4nAbs, but the mechanisms have not been studied. Here, PH progression was measured in mice treated with Dll4nAbs. We detected Notch signaling in lung tissues and analyzed pulmonary vascular permeability and inflammation. Notch target gene array was performed on adult human pulmonary microvascular endothelial cells (ECs) after inhibiting Notch cleavage...
November 5, 2021: Hypertension
https://read.qxmd.com/read/34719466/a-possible-revival-of-population-representing-digital-human-manikins-in-static-work-situations-exemplified-through-an-evaluation-of-a-prototype-console-for-robotic-surgery
#14
JOURNAL ARTICLE
Ida-Märta Rhén, Xuelong Fan, Magnus Kjellman, Mikael Forsman
BACKGROUND: In the 90s, digital human manikins (DHMs) were introduced in planning of workstations, by static or semi-static simulations. Modern DHMs can simulate dynamic work and offer a rapid way for a virtual pre-production ergonomic evaluation. Work-related musculoskeletal disorders may affect surgical performance and patient safety. A prototype of an open console, which is contrary to the conventional closed consoles and may be seen as a representative for a new generation, has been designed to reduce workload for robotic surgery surgeons...
2021: Work: a Journal of Prevention, Assessment, and Rehabilitation
https://read.qxmd.com/read/34718396/reply-to-letter-to-the-editor-by-mikael-forsman-xuelong-fan-ida-m%C3%A3-rta-rhen-and-carl-mikael-lind
#15
JOURNAL ARTICLE
Inger Arvidsson, Camilla Dahlqvist, Henrik Enquist, Catarina Nordander
No abstract text is available yet for this article.
October 28, 2021: Annals of Work Exposures and Health
https://read.qxmd.com/read/34488850/developmental-programming-of-dna-methylation-and-gene-expression-patterns-is-associated-with-extreme-cardiovascular-tolerance-to-anoxia-in-the-common-snapping-turtle
#16
JOURNAL ARTICLE
Ilan Ruhr, Jacob Bierstedt, Turk Rhen, Debojyoti Das, Sunil Kumar Singh, Soleille Miller, Dane A Crossley, Gina L J Galli
BACKGROUND: Environmental fluctuation during embryonic and fetal development can permanently alter an organism's morphology, physiology, and behaviour. This phenomenon, known as developmental plasticity, is particularly relevant to reptiles that develop in subterranean nests with variable oxygen tensions. Previous work has shown hypoxia permanently alters the cardiovascular system of snapping turtles and may improve cardiac anoxia tolerance later in life. The mechanisms driving this process are unknown but may involve epigenetic regulation of gene expression via DNA methylation...
September 6, 2021: Epigenetics & Chromatin
https://read.qxmd.com/read/34469509/concerning-a-work-movement-velocity-action-level-proposed-in-action-levels-for-the-prevention-of-work-related-musculoskeletal-disorders-in-the-neck-and-upper-extremities-a-proposal-by-inger-arvidsson-et-al-2021
#17
JOURNAL ARTICLE
Mikael Forsman, Xuelong Fan, Ida-Märta Rhén, Carl Mikael Lind
No abstract text is available yet for this article.
September 1, 2021: Annals of Work Exposures and Health
https://read.qxmd.com/read/34450967/effects-of-sensor-types-and-angular-velocity-computational-methods-in-field-measurements-of-occupational-upper-arm-and-trunk-postures-and-movements
#18
JOURNAL ARTICLE
Xuelong Fan, Carl Mikael Lind, Ida-Märta Rhen, Mikael Forsman
Accelerometer-based inclinometers have dominated kinematic measurements in previous field studies, while the use of inertial measurement units that additionally include gyroscopes is rapidly increasing. Recent laboratory studies suggest that these two sensor types and the two commonly used angular velocity computational methods may produce substantially different results. The aim of this study was, therefore, to evaluate the effects of sensor types and angular velocity computational methods on the measures of work postures and movements in a real occupational setting...
August 17, 2021: Sensors
https://read.qxmd.com/read/34280932/evolutionary-turnover-in-wnt-gene-expression-but-conservation-of-wnt-signaling-during-ovary-determination-in-a-tsd-reptile
#19
JOURNAL ARTICLE
Turk Rhen, Zachary Even, Alaina Brenner, Alexandra Lodewyk, Debojyoti Das, Sunil Singh, Rebecca Simmons
Temperature-dependent sex determination (TSD) is a well-known characteristic of many reptilian species. However, the molecular processes linking ambient temperature to determination of gonad fate remain hazy. Here, we test the hypothesis that Wnt expression and signaling differ between female- and male-producing temperatures in the snapping turtle Chelydra serpentina. Canonical Wnt signaling involves secretion of glycoproteins called WNTs, which bind to and activate membrane bound receptors that trigger β-catenin stabilization and translocation to the nucleus where β-catenin interacts with TCF/LEF transcription factors to regulate expression of Wnt targets...
July 19, 2021: Sexual Development: Genetics, Molecular Biology, Evolution, Endocrinology, Embryology, and Pathology of Sex Determination and Differentiation
https://read.qxmd.com/read/34078900/rna-atlas-of-human-bacterial-pathogens-uncovers-stress-dynamics-linked-to-infection
#20
JOURNAL ARTICLE
Kemal Avican, Jehad Aldahdooh, Matteo Togninalli, A K M Firoj Mahmud, Jing Tang, Karsten M Borgwardt, Mikael Rhen, Maria Fällman
Bacterial processes necessary for adaption to stressful host environments are potential targets for new antimicrobials. Here, we report large-scale transcriptomic analyses of 32 human bacterial pathogens grown under 11 stress conditions mimicking human host environments. The potential relevance of the in vitro stress conditions and responses is supported by comparisons with available in vivo transcriptomes of clinically important pathogens. Calculation of a probability score enables comparative cross-microbial analyses of the stress responses, revealing common and unique regulatory responses to different stresses, as well as overlapping processes participating in different stress responses...
June 2, 2021: Nature Communications
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