keyword
MENU ▼
Read by QxMD icon Read
search

Pcr gbs

keyword
https://www.readbyqxmd.com/read/28402182/analysis-of-point-mutations-in-the-pbp2x-pbp2b-and-pbp1a-genes-of-streptococcus-agalactiae-and-their-relation-with-a-reduced-susceptibility-to-cephalosporins
#1
Giorgio Piccinelli, Giuseppe Carlentini, Franco Gargiulo, Arnaldo Caruso, Maria Antonia De Francesco
The emergence of group B Streptococcus (GBS) isolates with reduced penicillin susceptibility (PRGBS) and their tendency to be nonsusceptible to fluoroquinolones prompted us to analyze the possible presence of amino acid mutations in penicillin-binding proteins (PBPs) (PBP2X, PBP1A, and PBP2B) from a collection of fluoroquinolone-resistant GBS isolates. We analyzed 21 GBS isolates resistant to levofloxacin. Sequence analysis of genes for PBPs was performed. The minimal inhibitory concentrations (MICs) for penicillin, ceftibuten, cefaclor, cefixime, cefotaxime, and ceftizoxime were performed by the Etest method and by broth microdilution method...
April 12, 2017: Microbial Drug Resistance: MDR: Mechanisms, Epidemiology, and Disease
https://www.readbyqxmd.com/read/28381212/low-depth-genotyping-by-sequencing-gbs-in-a-bovine-population-strategies-to-maximize-the-selection-of-high-quality-genotypes-and-the-accuracy-of-imputation
#2
Jean-Simon Brouard, Brian Boyle, Eveline M Ibeagha-Awemu, Nathalie Bissonnette
BACKGROUND: Genotyping-by-sequencing (GBS) has emerged as a powerful and cost-effective approach for discovering and genotyping single-nucleotide polymorphisms. The GBS technique was largely used in crop species where its low sequence coverage is not a drawback for calling genotypes because inbred lines are almost homozygous. In contrast, only a few studies used the GBS technique in animal populations (with sizeable heterozygosity rates) and many of those that have been published did not consider the quality of the genotypes produced by the bioinformatic pipelines...
April 5, 2017: BMC Genetics
https://www.readbyqxmd.com/read/28321367/evaluation-of-procedures-for-typing-of-group-b-streptococcus-a-retrospective-study
#3
Hans-Christian Slotved, Steen Hoffmann
BACKGROUND: This study evaluates two procedures for typing of Streptococcus agalactiae (group B streptococci; GBS) isolates, using retrospective typing data from the period 2010 to 2014 with a commercial latex agglutination test (latex test) and the Lancefield precipitation test (LP test). Furthermore, the genotype distribution of phenotypically non-typable (NT) GBS isolates is presented. We also raise the awareness, that the difference in typing results obtained by phenotypical methods and genotype based methods may have implications on vaccine surveillance in case a GBS vaccine is introduced...
2017: PeerJ
https://www.readbyqxmd.com/read/28315021/clinical-strains-of-streptococcus-agalactiae-carry-two-different-variants-of-pathogenicity-island-xii
#4
Eugenia Kuleshevich, Joseph Ferretti, Ilda Santos Sanches, Natesan Balasubramanian, Barbara Spellerberg, Androulla Efstratiou, Paula Kriz, Kornelia Grabovskaya, Olga Arjanova, Alevtina Savitcheva, Valentin Shevchenko, Anton Rysev, Alexander Suvorov
Streptococcus agalactiae or Group B streptococci (GBS) are a common cause of serious diseases of newborns and adults. GBS pathogenicity largely depends on genes located on the accessory genome including several pathogenicity islands (PAI). The present paper is focused on the structure and molecular epidemiological analysis of one of the GBS pathogenicity islands-the pathogenicity island PAI XII (Glaser et al. Mol Microbiol 45(6):1499-1513, 2002). This PAI was found to be composed of three different mobile genetic elements: a composite transposon (PAI-C), a genomic islet (PAI-B), and a pathogenicity island associated with gene sspB1 (PAI-A)...
March 18, 2017: Folia Microbiologica
https://www.readbyqxmd.com/read/28295891/molecular-serotyping-virulence-gene-profiling-and-pathogenicity-of-streptococcus-agalactiae-isolated-from-tilapia-farms-in-thailand-by-multiplex-pcr
#5
Korntip Kannika, Duangjai Pisuttharachai, Prapansak Srisapoome, Janenuj Wongtavatchai, Hidehiro Kondo, Ikuo Hirono, Sasimanas Unajak, Nontawith Areechon
AIMS: This study aimed to biotype Streptococcus agalactiae isolated from tilapia farms in Thailand based on molecular biotyping methods and to determine the correlation between the serotype and virulence of bacteria. In addition to a biotyping (serotyping) technique based on multiplex PCR of cps genes, in this study, we developed multiplex PCR typing of Group B streptococcus (GBS) virulence genes to examine 3 clusters of virulence genes and their correlation to the pathogenicity of S...
March 13, 2017: Journal of Applied Microbiology
https://www.readbyqxmd.com/read/28247153/group-b-streptococcal-pcr-testing-in-comparison-to-culture-for-diagnosis-of-late-onset-bacteraemia-and-meningitis-in-infants-aged-7-90-days-a-multi-centre-diagnostic-accuracy-study
#6
S M Morrissey, M Nielsen, L Ryan, H Al Dhanhani, M Meehan, S McDermott, N O'Sullivan, M Doyle, P Gavin, N O'Sullivan, R Cunney, R J Drew
The aim of this study was to compare an in-house real-time PCR assay, with bacterial culture as the reference, for the diagnosis of late onset group B Streptococcal (GBS) disease. This was a retrospective review. All children aged 7-90 days presenting to four paediatric centres that had a blood or CSF sample tested by GBS PCR were included. Of 7,686 blood and 2,495 cerebrospinal fluid (CSF) samples from patients of all ages received for PCR testing, 893 and 859 samples were eligible for the study, respectively...
March 1, 2017: European Journal of Clinical Microbiology & Infectious Diseases
https://www.readbyqxmd.com/read/28120587/identification-of-group-b-streptococci-using-16s-rrna-cfb-scpb-and-atr-genes-in-pregnant-women-by-pcr
#7
COMPARATIVE STUDY
Seyed Masoud Mousavi, Seyed Mostafa Hosseini, Rasoul Yousefi Mashouf, Mohammad Reza Arabestani
Streptococcus agalactiae is acommensalorganism, but it may cause infection in susceptible hosts. The aim of this study was to evaluate PCR assay compared with conventional culture method for direct detection of Streptococcus agalactiae. Total of 203 paired low vaginal swabs were collected from women at 35-37 weeks of pregnancy from June 2013 through February 2014 for detection of Streptococcus agalactiae using PCR assay targeting 16S rRNA, cfb, scpB, and atr genes and culture method following broth enrichment...
December 2016: Acta Medica Iranica
https://www.readbyqxmd.com/read/28114152/enhanced-identification-of-group-b-streptococcus-and-escherichia-coli-in-young-infants-with-meningitis-using-the-biofire-filmarray-meningitis-encephalitis-panel
#8
Harbir Singh Arora, Basim Isa Asmar, Hossein Salimnia, Prashant Agarwal, Sanjay Chawla, Nahed Abdel-Haq
FilmArray® Meningitis/Encephalitis (ME) PCR Panel was tested on 62 CSF samples from young infants (0-3 months) with suspected meningitis and compared with CSF cultures. Twelve CSF samples from 9 infants were positive by ME PCR panel (10 GBS, 2 E. coli) of which only 5 were positive by culture. The 7 CSF samples that were positive only by ME PCR panel were obtained from infants who had received prior antibiotic treatment. The ME PCR Panel can be a useful tool in the rapid diagnosis of bacterial meningitis in pretreated young infants...
January 19, 2017: Pediatric Infectious Disease Journal
https://www.readbyqxmd.com/read/28107386/regulation-of-pi-2b-pilus-expression-in-hypervirulent-streptococcus-agalactiae-st-17-bm110
#9
Bruno Périchon, Noémi Szili, Laurence du Merle, Isabelle Rosinski-Chupin, Myriam Gominet, Samuel Bellais, Claire Poyart, Patrick Trieu-Cuot, Shaynoor Dramsi
The widely spread Streptococcus agalactiae (also known as Group B Streptococcus, GBS) "hypervirulent" ST17 clone is strongly associated with neonatal meningitis. The PI-2b locus is mainly found in ST17 strains but is also present in a few non ST17 human isolates such as the ST-7 prototype strain A909. Here, we analysed the expression of the PI-2b pilus in the ST17 strain BM110 as compared to the non ST17 A909. Comparative genome analyses revealed the presence of a 43-base pair (bp) hairpin-like structure in the upstream region of PI-2b operon in all 26 ST17 genomes, which was absent in the 8 non-ST17 strains carrying the PI-2b locus...
2017: PloS One
https://www.readbyqxmd.com/read/28060047/genotype-characterization-of-group-b-streptococcus-isolated-from-infants-with-invasive-diseases-in-south-korea
#10
Hyun Mi Kang, Hoan Jong Lee, Hyunju Lee, Dae Sun Jo, Hye Soo Lee, Taek Soo Kim, Jeong Hwan Shin, Ki Wook Yun, Bongjin Lee, Eun Hwa Choi
BACKGROUND: Group B Streptococcus (GBS) is one of the leading causes of invasive infections in infants. This study aimed to investigate the genotypic diversity of GBS causing invasive infections in infants and to observe the prevalence of the highly virulent clone in South Korea. METHODS: Invasive strains of GBS were collected prospectively from infants admitted at four hospitals during 1995 to 2015. Serotype and multilocus sequence typing was determined. All isolates underwent PCR amplification to detect the presence of the hypervirulent surface adhesin (hvgA) gene...
January 3, 2017: Pediatric Infectious Disease Journal
https://www.readbyqxmd.com/read/28032541/molecular-characteristics-of-streptococcus-agalactiae-strains-deficient-in-alpha-like-protein-encoding-genes
#11
Christina Gabrielsen, Johan A Mæland, Randi Valsø Lyng, Andreas Radtke, Jan Egil Afset
Streptococcus agalactiae (group B streptococci, GBS) are important human and animal pathogens, which can be subdivided based on different capsular polysaccharides and surface-anchored alpha-like proteins (Alps), as well as other proteins. Nearly all GBS strains possess an Alp (Alp GBS), although Alp-negative GBS (non-Alp GBS) do occur. In this study, 10 (1.1 %) of 932 clinical human GBS tested lacked an Alp encoding gene. All 10 strains were from patients with bloodstream infection, confirming that non-Alp GBS can be highly virulent...
January 2017: Journal of Medical Microbiology
https://www.readbyqxmd.com/read/27934884/rapid-affordable-and-portable-medium-throughput-molecular-device-for-zika-virus
#12
Kamfai Chan, Scott C Weaver, Pui-Yan Wong, Sherly Lie, Eryu Wang, Mathilde Guerbois, Siva Praneeth Vayugundla, Season Wong
Zika virus (ZIKV) has gained global attention as an etiologic agent of fetal microcephaly and Guillain-Barré syndrome. Existing immuno-based rapid tests often fail to distinguish between Zika and related flaviviruses that are common in affected regions of Central and South Americas and the Caribbean. The US CDC and qualified state health department laboratories can perform the reverse transcription polymerase chain reaction (RT-PCR) ZIKV test using highly sophisticated instruments with long turnaround times...
December 9, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27927917/zika-virus-testing-considerations-lessons-learned-from-the-first-80-real-time-reverse-transcription-pcr-positive-cases-diagnosed-in-new-york-state
#13
Kirsten St George, Inderbir S Sohi, Elizabeth M Dufort, Amy B Dean, Jennifer L White, Ronald Limberger, Jamie N Sommer, Stephanie Ostrowski, Susan J Wong, P Bryon Backenson, Daniel Kuhles, Debra Blog, Jill Taylor, Brad Hutton, Howard A Zucker
The performance and interpretation of laboratory tests for Zika virus (ZKV) continue to be evaluated. Serology is cross-reactive, laborious, and frequently difficult to interpret, and serum was initially solely recommended for molecular diagnosis. ZKV testing was initiated in January 2016 in New York State for symptomatic patients, pregnant women, their infants, and patients with Guillain-Barré syndrome who had traveled to areas with ZKV transmission. Subsequently, eligibility was expanded to pregnant women with sexual partners with similar travel histories...
February 2017: Journal of Clinical Microbiology
https://www.readbyqxmd.com/read/27919709/evaluation-of-anti-zika-virus-activities-of-broad-spectrum-antivirals-and-nih-clinical-collection-compounds-using-a-cell-based-high-throughput-screen-assay
#14
Robert S Adcock, Yong-Kyu Chu, Jennifer E Golden, Dong-Hoon Chung
Recent studies have clearly underscored the association between Zika virus (ZIKV) and severe neurological diseases such as microcephaly and Guillain-Barre syndrome. Given the historical complacency surrounding this virus, however, no significant antiviral screenings have been performed to specifically target ZIKV. As a result, there is an urgent need for a validated screening method and strategy that is focused on highlighting potential anti-ZIKV inhibitors that can be further advanced via rigorous validation and optimization...
February 2017: Antiviral Research
https://www.readbyqxmd.com/read/27910939/real-time-pcr-based-serotyping-of-streptococcus-agalactiae
#15
Kathleen M Breeding, Bhavana Ragipani, Kun-Uk David Lee, Martin Malik, Tara M Randis, Adam J Ratner
Group B Streptococcus (GBS) is an encapsulated, gram-positive pathogen that is an important cause of neonatal invasive infections, including sepsis and meningitis. There are ten known GBS serotypes based on distinct capsule compositions (Ia, Ib, II-IX), and current candidate capsular polysaccharide conjugate vaccines target only a subset of these. Serotyping of GBS isolates is important for understanding local epidemiology and for monitoring for serotype replacement or capsular switching. However, serotyping generally requires either latex agglutination, multiplex PCR with analysis of band sizes, or analysis of whole genome sequences-all techniques that are either expensive or not widely available...
December 2, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27893080/travel-associated-zika-virus-disease-acquired-in-the-americas-through-february-2016-a-geosentinel-analysis
#16
Davidson H Hamer, Kira A Barbre, Lin H Chen, Martin P Grobusch, Patricia Schlagenhauf, Abraham Goorhuis, Perry J J van Genderen, Israel Molina, Hilmir Asgeirsson, Phyllis E Kozarsky, Eric Caumes, Stefan H Hagmann, Frank P Mockenhaupt, Gilles Eperon, Elizabeth D Barnett, Emmanuel Bottieau, Andrea K Boggild, Philippe Gautret, Noreen A Hynes, Susan Kuhn, R Ryan Lash, Karin Leder, Michael Libman, Denis J M Malvy, Cecilia Perret, Camilla Rothe, Eli Schwartz, Annelies Wilder-Smith, Martin S Cetron, Douglas H Esposito
Background: Zika virus has spread rapidly in the Americas and has been imported into many nonendemic countries by travelers. Objective: To describe clinical manifestations and epidemiology of Zika virus disease in travelers exposed in the Americas. Design: Descriptive, using GeoSentinel records. Setting: 63 travel and tropical medicine clinics in 30 countries. Patients: Ill returned travelers with a confirmed, probable, or clinically suspected diagnosis of Zika virus disease seen between January 2013 and 29 February 2016...
January 17, 2017: Annals of Internal Medicine
https://www.readbyqxmd.com/read/27862008/zika-virus-global-health-challenge-threat-and-current-situation
#17
REVIEW
Hafsa Aziz, Aadarash Zia, Amania Anwer, Muneeba Aziz, Shazia Fatima, Muhammad Faheem
ZIKV has emerged as grave global health issue in the past few years. ZIKV was firstly isolated in 1947 from a rhesus sentinel monkey in the Zika forest in Uganda. It is usually transmitted by the bite of infected mosquitoes and infects skin fibroblasts, skin keratinocytes, etc. ZIKV until now was under reported because of its clinical similarity with the dengue and chikungunya. It is usually spread through the course of the sylvatic cycle. In this cycle, the virus or pathogen lifespan is spent between the wild animal and vectors...
November 10, 2016: Journal of Medical Virology
https://www.readbyqxmd.com/read/27836180/microrna-expression-profiling-in-guillain-barr%C3%A3-syndrome
#18
Zhanyun Lv, Qiguang Shi, Wenhui Huang, Chunye Xing, Yanlei Hao, Xungang Feng, Yan Yang, Aimei Zhang, Qingxia Kong, Nobuhiro Yuki, Yuzhong Wang
Guillain-Barré syndrome (GBS) is an acute inflammatory autoimmune disease affecting the peripheral nervous system. MicroRNAs (miRNAs) are a class of small noncoding RNAs that play critical roles in the process of various diseases. The miRNAs in GBS were less studied. In this study, using microarray technology, we found two miRNAs including has-miR-4717-5p and has-miR-642b-5p were upregulated in patients with GBS, which were further confirmed by PCR analysis. Kyoto Encyclopedia of Genes and Genomes pathway analysis suggested that the dysregulated miRNAs may be involved in the mechanism of GBS by affecting the cellular differentiation, cell survival and axonal outgrowth...
December 15, 2016: Journal of Neuroimmunology
https://www.readbyqxmd.com/read/27835759/zika-virus-epidemic-in-brazil-i-fatal-disease-in-adults-clinical-and-laboratorial-aspects
#19
Raimunda S S Azevedo, Marialva T Araujo, Arnaldo J Martins Filho, Consuelo S Oliveira, Bruno T D Nunes, Ana C R Cruz, Ana G P A C Nascimento, Rita C Medeiros, Cezar A M Caldas, Fernando C Araujo, Juarez A S Quaresma, Barbara C B Vasconcelos, Maria G L Queiroz, Elizabeth S Travassos da Rosa, Daniele F Henriques, Eliana V P Silva, Jannifer O Chiang, Lívia C Martins, Daniele B A Medeiros, Juliana A Lima, Márcio R T Nunes, Jedson F Cardoso, Sandro P Silva, Pei-Yong Shi, Robert B Tesh, Sueli G Rodrigues, Pedro F C Vasconcelos
BACKGROUND: Zika virus (ZIKV) was first detected in Brazil in May 2015 and the country experienced an explosive epidemic. However, recent studies indicate that the introduction of ZIKV occurred in late 2013. Cases of microcephaly and deaths associated with ZIKV infection were identified in Brazil in November, 2015. OBJECTIVES: To determine the etiology of three fatal adult cases. STUDY DESIGN: Here we report three fatal adult cases of ZIKV disease...
December 2016: Journal of Clinical Virology: the Official Publication of the Pan American Society for Clinical Virology
https://www.readbyqxmd.com/read/27832051/incidence-of-zika-virus-disease-by-age-and-sex-puerto-rico-november-1-2015-october-20-2016
#20
Matthew Lozier, Laura Adams, Mitchelle Flores Febo, Jomil Torres-Aponte, Melissa Bello-Pagan, Kyle R Ryff, Jorge Munoz-Jordan, Myriam Garcia, Aidsa Rivera, Jennifer S Read, Stephen H Waterman, Tyler M Sharp, Brenda Rivera-Garcia
Zika virus is a flavivirus transmitted primarily by Aedes species mosquitoes; symptoms of infection include rash, arthralgia, fever, and conjunctivitis.*(,)(†) Zika virus infection during pregnancy can cause microcephaly and other serious brain anomalies (1), and in rare cases, Zika virus infection has been associated with Guillain-Barré syndrome (2) and severe thrombocytopenia (3). This report describes the incidence of reported symptomatic Zika virus disease in the U.S. territory of Puerto Rico by age and sex...
November 11, 2016: MMWR. Morbidity and Mortality Weekly Report
keyword
keyword
44601
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"