System based learning

The elderly frequently present impaired blood-brain barrier which is closely associated with various neurodegenerative diseases. However, how the albumin, the most abundant protein in the plasma, leaking through the disrupted BBB, contributes to the neuropathology remains poorly understood. We here demonstrated that mouse serum albumin-activated microglia induced astrocytes to A1 phenotype to remarkably increase levels of Elovl1, an astrocytic synthase for very long-chain saturated fatty acids, significantly promoting VLSFAs secretion and causing neuronal lippoapoptosis through endoplasmic reticulum stress response pathway...

Large language models (LLMs) can potentially transform healthcare, particularly in providing the right information to the right provider at the right time in the hospital workflow. This study investigates the integration of LLMs into healthcare, specifically focusing on improving clinical decision support systems (CDSSs) through accurate interpretation of medical guidelines for chronic Hepatitis C Virus infection management. Utilizing OpenAI's GPT-4 Turbo model, we developed a customized LLM framework that incorporates retrieval augmented generation (RAG) and prompt engineering...

In this paper, we focus on indexing mechanisms for unstructured clinical big integrated data repository systems. Clinical data is unstructured and heterogeneous, which comes in different files and formats. Accessing data efficiently and effectively are critical challenges. Traditional indexing mechanisms are difficult to apply on unstructured data, especially by identifying correlation information between clinical data elements. In this research work, we developed a correlation-aware relevance-based index that retrieves clinical data by fetching most relevant cases efficiently...

Optical Coherence Tomography (OCT) is widely recognized as the leading modality for assessing ocular retinal diseases, playing a crucial role in diagnosing retinopathy while maintaining a non-invasive modality. The increasing volume of OCT images underscores the growing importance of automating image analysis. Age-related diabetic Macular Degeneration (AMD) and Diabetic Macular Edema (DME) are the most common cause of visual impairment. Early detection and timely intervention for diabetes-related conditions are essential for preventing optical complications and reducing the risk of blindness...

In the realm of long document classification (LDC), previous research has predominantly focused on modeling unimodal texts, overlooking the potential of multi-modal documents incorporating images. To address this gap, we introduce an innovative approach for multi-modal long document classification based on the Hierarchical Prompt and Multi-modal Transformer (HPMT). The proposed HPMT method facilitates multi-modal interactions at both the section and sentence levels, enabling a comprehensive capture of hierarchical structural features and complex multi-modal associations of long documents...

We consider a square non linear parametric equations system F(P,X) = 0 which is constituted of n non differential equations in the n unknowns {x1 ,…,xn } that are the components of X while P={p1 ,…,pm } is a set of m parameters that play a role in the definition of the equations F. We assume that P is restricted to lie in a bounded region and we are interested in developing a solver for obtaining all real solutions exactly (a notion that is defined in the paper) for any parameter values within the bounded region...

Structural magnetic resonance imaging (sMRI) has shown great clinical value and has been widely used in deep learning (DL) based computer-aided brain disease diagnosis. Previous DL-based approaches focused on local shapes and textures in brain sMRI that may be significant only within a particular domain. The learned representations are likely to contain spurious information and have poor generalization ability in other diseases and datasets. To facilitate capturing meaningful and robust features, it is necessary to first comprehensively understand the intrinsic pattern of the brain that is not restricted within a single data/task domain...

Textbook question answering (TQA) task aims to infer answers for given questions from a multimodal context, including text and diagrams. The existing studies have aggregated intramodal semantics extracted from a single modality but have yet to capture the intermodal semantics between different modalities. A major challenge in learning intermodal semantics is maintaining lossless intramodal semantics while bridging the gap of semantics caused by heterogeneity. In this article, we propose an intermodal relation-aware heterogeneous graph network (IMR-HGN) to extract the intermodal semantics for TQA, which aggregates different modalities while learning features rather than representing them independently...

In industrial production processes, the mechanical properties of materials will directly determine the stability and consistency of product quality. However, detecting the current mechanical property is time-consuming and labor-intensive, and the material quality cannot be controlled in time. To achieve high-quality steel materials, developing a novel intelligent manufacturing technology that can satisfy multitask predictions for material properties has become a new research trend. This article proposes a multiobjective evolutionary learning method based on a two-stage model with topological sparse autoencoder (TSAE) and ensemble learning...

Probabilistic latent variable models (PLVMs), such as probabilistic principal component analysis (PPCA), are widely employed in process monitoring and fault detection of industrial processes. This article proposes a novel deep PPCA (DePPCA) model, which has the advantages of both probabilistic modeling and deep learning. The construction of DePPCA includes a greedy layer-wise pretraining phase and a unified end-to-end fine-tuning phase. The former establishes a hierarchical deep structure based on cascading multiple layers of the PPCA module to extract high-level features...

Recently, the multiscale problem in computer vision has gradually attracted people's attention. This article focuses on multiscale representation for object detection and recognition, comprehensively introduces the development of multiscale deep learning, and constructs an easy-to-understand, but powerful knowledge structure. First, we give the definition of scale, explain the multiscale mechanism of human vision, and then lead to the multiscale problem discussed in computer vision. Second, advanced multiscale representation methods are introduced, including pyramid representation, scale-space representation, and multiscale geometric representation...

High-efficiency deep learning (DL) models are necessary not only to facilitate their use in devices with limited resources but also to improve resources required for training. Convolutional neural networks (ConvNets) typically exert severe demands on local device resources and this conventionally limits their adoption within mobile and embedded platforms. This brief presents work toward utilizing static convolutional filters generated from the space of local binary patterns (LBPs) and Haar features to design efficient ConvNet architectures...

Knowledge tracing (KT) refers to predicting learners' performance in the future according to their historical responses, which has become an essential task in intelligent tutoring systems. Most deep learning-based methods usually model the learners' knowledge states via recurrent neural networks (RNNs) or attention mechanisms. Recently emerging graph neural networks (GNNs) assist the KT model to capture the relationships such as question-skill and question-learner. However, non-pairwise and complex higher-order information among responses is ignored...

The issue of traffic congestion poses a significant obstacle to the development of global cities. One promising solution to tackle this problem is intelligent traffic signal control (TSC). Recently, TSC strategies leveraging reinforcement learning (RL) have garnered attention among researchers. However, the evaluation of these models has primarily relied on fixed metrics like reward and queue length. This limited evaluation approach provides only a narrow view of the model's decision-making process, impeding its practical implementation...

ConspectusIn the ever-increasing renewable-energy demand scenario, developing new photovoltaic technologies is important, even in the presence of established terawatt-scale silicon technology. Emerging photovoltaic technologies play a crucial role in diversifying material flows while expanding the photovoltaic product portfolio, thus enhancing security and competitiveness within the solar industry. They also serve as a valuable backup for silicon photovoltaic, providing resilience to the overall energy infrastructure...

To enhance M-mode echocardiography's utility for measuring cardiac structures, we developed and evaluated an artificial intelligence (AI)-based automated analysis system for M-mode images through the aorta and left atrium [M-mode (Ao-LA)], and through the left ventricle [M-mode (LV)]. Our system, integrating two deep neural networks (DNN) for view classification and image segmentation, alongside an auto-measurement algorithm, was developed using 5,958 M-mode images [3,258 M-mode (LA-Ao), and 2,700 M-mode (LV)] drawn from a nationwide echocardiographic dataset collated from five tertiary hospitals...

PURPOSE: To investigate the influence of deep learning reconstruction (DLR) on bladder MRI, specifically examination time, image quality, and diagnostic performance of vesical imaging reporting and data system (VI-RADS) within a prospective clinical cohort. METHODS: Seventy participants with bladder cancer who underwent MRI between August 2022 and February 2023 with a protocol containing standard T2-weighted imaging (T2WIS ), standard diffusion-weighted imaging (DWIS ), fast T2WI with DLR (T2WIDL ), and fast DWI with DLR (DWIDL ) were enrolled in this prospective study...

The progress of research focused on cholangiocytes and the biliary tree during development and following injury is hindered by limited available quantitative methodologies. Current techniques include two-dimensional standard histological cell-counting approaches, which are rapidly performed error-prone and lack architectural context; or three-dimensional analysis of the biliary tree in opacified livers, which introduce technical issues along with minimal quantitation. The present study aims to fill these quantitative gaps with a supervised machine learning model (BiliQML) able to quantify biliary forms in the liver of anti-Keratin 19 antibody-stained whole slide images...

Integration of multiple data sources presents a challenge for accurate prediction of molecular patho-phenotypic features in automated analysis of data from human model systems. Here, we applied a machine learning-based data integration to distinguish patho-phenotypic features at the subcellular level for dilated cardiomyopathy (DCM). We employed a human induced pluripotent stem cell-derived cardiomyocyte (iPSC-CM) model of a DCM mutation in the sarcomere protein troponin T (TnT), TnT-R141W, compared to isogenic healthy (WT) control iPSC-CMs...

Genome-scale metabolic models (GEMs) have been widely employed to predict microorganism behaviors. However, GEMs only consider stoichiometric constraints, leading to a linear increase in simulated growth and product yields as substrate uptake rates rise. This divergence from experimental measurements prompted the creation of enzyme-constrained models (ecModels) for various species, successfully enhancing chemical production. Building upon studies that allocate macromolecule resources, we developed a Python-based workflow (ECMpy) that constructs an enzyme-constrained model...