keyword
https://read.qxmd.com/read/38648205/bioinformatics-and-system-biology-approaches-to-determine-the-connection-of-sars-cov-2-infection-and-intrahepatic-cholangiocarcinoma
#1
JOURNAL ARTICLE
Xinyi Zhou, Tengda Huang, Hongyuan Pan, Ao Du, Tian Wu, Jiang Lan, Yujia Song, Yue Lv, Fang He, Kefei Yuan
INTRODUCTION: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the causal agent of coronavirus disease 2019 (COVID-19), has infected millions of individuals worldwide, which poses a severe threat to human health. COVID-19 is a systemic ailment affecting various tissues and organs, including the lungs and liver. Intrahepatic cholangiocarcinoma (ICC) is one of the most common liver cancer, and cancer patients are particularly at high risk of SARS-CoV-2 infection. Nonetheless, few studies have investigated the impact of COVID-19 on ICC patients...
2024: PloS One
https://read.qxmd.com/read/38629274/orphan-nuclear-receptor-nr4a3-promotes-vascular-calcification-via-histone-lactylation
#2
JOURNAL ARTICLE
Wenqi Ma, Kangni Jia, Haomai Cheng, Hong Xu, Zhigang Li, Hang Zhang, Hongyang Xie, Lingfang Zhuang, Ziyang Wang, Yuke Cui, Hang Sun, Lei Yi, Zhiyong Chen, Shengzhong Duan, Motoaki Sano, Keiichi Fukuda, Lin Lu, Fei Gao, Ruiyan Zhang, Xiaoxiang Yan
BACKGROUND: Medial arterial calcification is a chronic systemic vascular disorder distinct from atherosclerosis and is commonly observed in patients with chronic kidney disease, diabetes, and aging individuals. We previously showed that NR4A3 (nuclear receptor subfamily 4 group A member 3), an orphan nuclear receptor, is a key regulator in apo (apolipoprotein) A-IV-induced atherosclerosis progression; however, its role in vascular calcification is poorly understood. METHODS: We generated NR4A3-/- mice and 2 different types of medial arterial calcification models to investigate the biological roles of NR4A3 in vascular calcification...
April 17, 2024: Circulation Research
https://read.qxmd.com/read/38566813/constructing-lactylation-related-genes-prognostic-model-to-effectively-predict-the-disease-free-survival-and-treatment-responsiveness-in-prostate-cancer-based-on-machine-learning
#3
JOURNAL ARTICLE
Jinyou Pan, Jianpeng Zhang, Jingwei Lin, Yinxin Cai, Zhigang Zhao
Background: Prostate cancer (PCa) is one of the most common malignancies in men with a poor prognosis. It is therefore of great clinical importance to find reliable prognostic indicators for PCa. Many studies have revealed the pivotal role of protein lactylation in tumor development and progression. This research aims to analyze the effect of lactylation-related genes on PCa prognosis. Methods: By downloading mRNA-Seq data of TCGA PCa, we obtained the differential genes related to lactylation in PCa. Five machine learning algorithms were used to screen for lactylation-related key genes for PCa, then the five overlapping key genes were used to construct a survival prognostic model by lasso cox regression analysis...
2024: Frontiers in Genetics
https://read.qxmd.com/read/38543773/label-free-quantitative-analysis-of-pig-liver-proteome-after-hepatitis-e-virus-infection
#4
JOURNAL ARTICLE
Camillo Martino, Alessio Di Luca, Francesca Bennato, Andrea Ianni, Fabrizio Passamonti, Elisa Rampacci, Michael Henry, Paula Meleady, Giuseppe Martino
Hepatitis E represents an emerging zoonotic disease caused by the Hepatitis E virus (HEV), for which the main route of transmission is foodborne. In particular, infection in humans has been associated with the consumption of contaminated undercooked meat of pig origin. The aim of this study was to apply comparative proteomics to determine if porcine liver protein profiles could be used to distinguish between pigs seropositive and seronegative for HEV. Preliminarily, an ELISA was used to evaluate the presence of anti-HEV antibodies in the blood serum of 136 animals sent to slaughter...
March 6, 2024: Viruses
https://read.qxmd.com/read/38499636/prognosis-significance-and-potential-association-between-aldoa-and-akt-expression-in-colorectal-cancer
#5
JOURNAL ARTICLE
Menglin Xu, Shihang Xi, Haoran Li, Yong Xia, Guangliang Mei, Zhengwu Cheng
Colorectal cancer (CRC) is one of the most common malignant tumors of the digestive tract and a leading cause of cancer-related death worldwide. Since many CRC patients are diagnosed already in the advanced stage, and traditional chemoradiotherapy is prone to drug resistance, it is important to find new therapeutic targets. In this study, the expression levels of ALDOA and p-AKT were detected in cancer tissues and paired normal tissues, and it was found that they were significantly increased in CRC tissues, and their high expression indicated poor prognosis...
March 18, 2024: Scientific Reports
https://read.qxmd.com/read/38453820/znf692-drives-malignant-development-of-hepatocellular-carcinoma-cells-by-promoting-aldoa-dependent-glycolysis
#6
JOURNAL ARTICLE
Weiwei Meng, Xiaojuan Lu, Guanglei Wang, Qingyu Xiao, Jing Gao
Hepatocellular carcinoma (HCC) is one of the malignancies with the worst prognosis worldwide, in the occurrence and development of which glycolysis plays a central role. This study uncovered a mechanism by which ZNF692 regulates ALDOA-dependent glycolysis in HCC cells. RT-qPCR and western blotting were used to detect the expression of ZNF692, KAT5, and ALDOA in HCC cell lines and a normal liver cell line. The influences of transfection-induced alterations in the expression of ZNF692, KAT5, and ALDOA on the functions of HepG2 cells were detected by performing MTT, flow cytometry, Transwell, cell scratch, and colony formation assays, and the levels of glucose and lactate were determined using assay kits...
March 8, 2024: Functional & Integrative Genomics
https://read.qxmd.com/read/38443347/the-m-6-a-reader-igf2bp2-regulates-glycolytic-metabolism-and-mediates-histone-lactylation-to-enhance-hepatic-stellate-cell-activation-and-liver-fibrosis
#7
JOURNAL ARTICLE
Yongqiang Zhou, Jiexi Yan, He Huang, Lu Liu, Longfei Ren, Jinjing Hu, Xiaoxu Jiang, Yan Zheng, Lingcong Xu, Fupeng Zhong, Xun Li
Evidence for the involvement of N6 -Methyladenosine (m6 A) modification in the etiology and progression of liver fibrosis has emerged and holds promise as a therapeutic target. Insulin-like growth factor 2 (IGF2) mRNA-binding protein 2 (IGF2BP2) is a newly identified m6 A-binding protein that functions to enhance mRNA stability and translation. However, its role as an m6 A-binding protein in liver fibrosis remains elusive. Here, we observed that IGF2BP2 is highly expressed in liver fibrosis and activated hepatic stellate cells (HSCs), and inhibition of IGF2BP2 protects against HSCs activation and liver fibrogenesis...
March 5, 2024: Cell Death & Disease
https://read.qxmd.com/read/38419074/exosome-proteomes-reveal-glycolysis-related-enzyme-enrichment-in-primary-canine-mammary-gland-tumor-compared-to-metastases
#8
JOURNAL ARTICLE
Hui-Su Kim, Je-Yoel Cho
OBJECTIVE: Numerous evidence has highlighted the differences between primary tumors and metastases. Nonetheless, the differences in exosomal proteins derived from primary tumor and metastases remain elusive. Here, we aimed to identify differentially expressed exosomal proteins from primary canine mammary gland tumor and metastases to understand how they shape their own tumor microenvironment. METHODS: We clearly distinguished primary canine mammary gland tumors (CHMp) from metastases (CHMm) and profiled the proteins within their secreted exosomes using LC-MS/MS...
February 28, 2024: Proteome Science
https://read.qxmd.com/read/38389836/enhancing-anti-tumor-potential-low-intensity-vibration-suppresses-osteosarcoma-progression-and-augments-mscs-tumor-suppressive-abilities
#9
JOURNAL ARTICLE
Xue Xiong, Qingji Huo, Kexin Li, Changpeng Cui, Chunyi Chang, Charles Park, BonHeon Ku, Chin-Suk Hong, HeeChang Lim, Pankita H Pandya, M Reza Saadatzadeh, Khadijeh Bijangi-Vishehsaraei, Chien-Chi Lin, Melissa A Kacena, Karen E Pollok, Andy Chen, Jing Liu, William R Thompson, Xue-Lian Li, Bai-Yan Li, Hiroki Yokota
Rationale: Osteosarcoma (OS), a common malignant bone tumor, calls for the investigation of novel treatment strategies. Low-intensity vibration (LIV) presents itself as a promising option, given its potential to enhance bone health and decrease cancer susceptibility. This research delves into the effects of LIV on OS cells and mesenchymal stem cells (MSCs), with a primary focus on generating induced tumor-suppressing cells (iTSCs) and tumor-suppressive conditioned medium (CM). Methods: To ascertain the influence of vibration frequency, we employed numerical simulations and conducted experiments to determine the most effective LIV conditions...
2024: Theranostics
https://read.qxmd.com/read/38244313/aldoa-coordinates-pde3a-through-the-%C3%AE-catenin-id3-axis-to-stimulate-cancer-metastasis-and-m2-polarization-in-lung-cancer-with-egfr-mutations
#10
JOURNAL ARTICLE
Chia-Ying Yeh, Huei Yu Cai, Han-His Kuo, You-Yu Lin, Zhao-Jing He, Hsiao-Chen Cheng, Chih-Jen Yang, Chi-Ying F Huang, Yu-Chan Chang
Lung cancer has a high incidence rate and requires more effective treatment strategies and drug options for clinical patients. EGFR is a common genetic alteration event in lung cancer that affects patient survival and drug strategy. Our study discovered aberrant aldolase A (ALDOA) expression and dysfunction in lung cancer patients with EGFR mutations. In addition to investigating relevant metabolic processes like glucose uptake, lactate production, and ATPase activity, we examined multi-omics profiles (transcriptomics, proteomics, and pull-down assays)...
January 11, 2024: Biochemical and Biophysical Research Communications
https://read.qxmd.com/read/38230862/small-warriors-of-nature-novel-red-emissive-chlorophyllin-carbon-dots-harnessing-fenton-fueled-ferroptosis-for-in-vitro-and-in-vivo-cancer-treatment
#11
JOURNAL ARTICLE
Emel Kirbas Cilingir, Omur Besbinar, Linda Giro, Mattia Bartoli, Jose L Hueso, Keenan J Mintz, Yagmur Aydogan, Jordan M Garber, Mine Turktas, Okan Ekim, Ahmet Ceylan, Mehmet Altay Unal, Mine Ensoy, Fikret Arı, Ozge Ozgenç Çinar, Berfin Ilayda Ozturk, Cemile Gokce, Demet Cansaran-Duman, Markus Braun, Josef Wachtveitl, Jesus Santamaria, Lucia Gemma Delogu, Alberto Tagliaferro, Açelya Yilmazer, Roger M Leblanc
The appeal of carbon dots (CDs) has grown recently, due to their established biocompatibility, adjustable photoluminescence properties, and excellent water solubility. For the first time in the literature, copper chlorophyllin-based carbon dots (Chl-D CDs) are successfully synthesized. Chl-D CDs exhibit unique spectroscopic traits and are found to induce a Fenton-like reaction, augmenting photodynamic therapy (PDT) efficacies via ferroptotic and apoptotic pathways. To bolster the therapeutic impact of Chl-D CDs, a widely used cancer drug, temozolomide, is linked to their surface, yielding a synergistic effect with PDT and chemotherapy...
January 17, 2024: Small
https://read.qxmd.com/read/38184958/sfxn1-as-a-potential-diagnostic-and-prognostic-biomarker-of-luad-is-associated-with-18-f-fdg-metabolic-parameters
#12
JOURNAL ARTICLE
Yao-Hua Zhang, Xu-Sheng Liu, Yan Gao, Ling-Ling Yuan, Zhong-Min Huang, Yu Zhang, Zi-Yue Liu, Yi Yang, Xiao-Yu Liu, Chang-Bin Ke, Zhi-Jun Pei
BACKGROUND: Sideroflexin 1 (SFXN1) has been discovered as a novel tumor marker for lung adenocarcinoma, but data on its importance in the development of lung adenocarcinoma is still limited. This study evaluated the correlation between SFXN1 and parameters related to 18 F-flurodeoxyglucose (18 F-FDG) positron emission tomography/computed tomography (PET/CT), and further explored the role of SFXN1 in the value-added and glycolytic processes of LUAD. METHOD: The expression and prognostic value of SFXN1 mRNA in LUAD were analyzed using The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) data base...
December 27, 2023: Lung Cancer: Journal of the International Association for the Study of Lung Cancer
https://read.qxmd.com/read/38159578/increased-nad-levels-protect-female-mouse-reproductive-system-against-zearalenone-impaired-glycolysis-lipid-metabolism-antioxidant-capacity-and-inflammation
#13
JOURNAL ARTICLE
Dai Chao, Mengqian Hou, Xudong Yang, Zhefeng Wang, Changpo Sun, Xin Wu, Shujin Wang
The reproductive system is a primary target organ for zearalenone (ZEN, a widespread fusarium mycotoxin) to exert its toxic effects, including decreased antioxidant capacity and aggravated inflammatory response. These ZEN-induced reproductive abnormalities are partially caused by the declining levels of nicotinamide adenine dinucleotide (NAD+), which results in an imbalance in lipid/glucose metabolism. Accordingly, the present study aimed to investigate whether supplements of nicotinamide mononucleotide (NMN, a NAD+ precursor) in female mice could protect against ZEN-induced reproductive toxicity...
December 28, 2023: Reproductive Toxicology
https://read.qxmd.com/read/38159424/serum-exosomes-from-hepatitis-b-virus-infected-patients-inhibit-glycolysis-in-sertoli-cells-via-mir-122-5p-aldoa-axis
#14
JOURNAL ARTICLE
Hao Deng, Yucheng Zhong, Jun Zhao, Xiaohang Li, Guoqun Luo, Huan Li
Hepatitis B virus (HBV) infection is associated with male infertility. The mechanism includes an increase in chromosomal instability in sperm, which has an adverse effect on sperm viability and function. Sertoli cells (SCs) are vital in spermatogenesis because they use glycolysis to provide energy to germ cells and themselves. HBV infection impairs sperm function. However, whether HBV infection disrupts energy metabolism in SCs remains unclear. This study aimed to determine the role of serum exosomes of HBV-infected patients in SC viability and glycolysis...
December 29, 2023: Reproductive Biology
https://read.qxmd.com/read/38155775/proteomic-analysis-identifies-pfkp-lactylation-in-sw480-colon-cancer-cells
#15
JOURNAL ARTICLE
Zhe Cheng, Huichao Huang, Maoyu Li, Yongheng Chen
Aerobic glycolysis is a pivotal hallmark of cancers, including colorectal cancer. Evidence shows glycolytic enzymes are regulated by post-translational modifications (PTMs), thereby affecting the Warburg effect and reprograming cancer metabolism. Lysine lactylation is a PTM reported in 2019 in histones. In this study, we identified protein lactylation in FHC cells and SW480 colon cancer cells through mass spectrometry. Totally, 637 lysine lactylation sites in 444 proteins were identified in FHC and SW480 cells...
January 19, 2024: IScience
https://read.qxmd.com/read/38132310/cumulus-cell-and-oocyte-gene-expression-in-prepubertal-gilts-and-sows-identifies-cumulus-cells-as-a-prime-informative-parameter-of-oocyte-quality
#16
JOURNAL ARTICLE
Linda Marijke Haug, Robert C Wilson, Ann Helen Gaustad, Reina Jochems, Elisabeth Kommisrud, Eli Grindflek, Anne Hege Alm-Kristiansen
Cumulus cells (CCs) are pivotal during oocyte development. This study aimed to identify novel marker genes for porcine oocyte quality by examining the expression of selected genes in CCs and oocytes, employing the model of oocytes from prepubertal animals being of reduced quality compared to those from adult animals. Total RNA was extracted either directly after follicle aspiration or after in vitro maturation, followed by RT-qPCR. Immature gilt CCs accumulated BBOX1 transcripts, involved in L-carnitine biosynthesis, to a 14...
December 3, 2023: Biology
https://read.qxmd.com/read/38104170/mass-spectrometry-in-cerebrospinal-fluid-uncovers-association-of-glycolysis-biomarkers-with-alzheimer-s-disease-in-a-large-clinical-sample
#17
JOURNAL ARTICLE
Matthijs B de Geus, Shannon N Leslie, TuKiet Lam, Weiwei Wang, Florence Roux-Dalvai, Arnaud Droit, Pia Kivisakk, Angus C Nairn, Steven E Arnold, Becky C Carlyle
Alzheimer's disease (AD) is a complex and heterogeneous neurodegenerative disorder with contributions from multiple pathophysiological pathways. One of the long-recognized and important features of AD is disrupted cerebral glucose metabolism, but the underlying molecular basis remains unclear. In this study, unbiased mass spectrometry was used to survey CSF from a large clinical cohort, comparing patients who are either cognitively unimpaired (CU; n = 68), suffering from mild-cognitive impairment or dementia from AD (MCI-AD, n = 95; DEM-AD, n = 72), or other causes (MCI-other, n = 77; DEM-other, n = 23), or Normal Pressure Hydrocephalus (NPH, n = 57)...
December 16, 2023: Scientific Reports
https://read.qxmd.com/read/38046281/recombinant-human-adenovirus-type-5-h101-intra-tumor-therapy-in-patients-with-persistent-recurrent-or-metastatic-cervical-cancer-genomic-profiling-relating-to-clinical-efficacy
#18
JOURNAL ARTICLE
Qiying Zhang, Jing Zhang, Zi Liu, Juan Wang, Fei Wang, Tao Wang, Fan Shi, Jin Su, Yalong Zhao
OBJECTIVE: Genomic profiles relating to H101 treatment-induced alterations are yet to be achieved. Here, we evaluated the impact of H101 via exome-sequencing approaches aiming to probe for potential biomarkers that are actionable in the treatment of persistent/recurrent/metastatic (P/R/M) cervical cancer. METHODS: Whole exome sequencing (WES) was performd on paired pre- and post-H101 samples from 17 P/R/M cervical cancer patients who received serial intra-tumor injections of H101...
2023: Drug Design, Development and Therapy
https://read.qxmd.com/read/38010897/aldolase-a-promotes-cervical-cancer-cell-radioresistance-by-regulating-the-glycolysis-and-dna-damage-after-irradiation
#19
JOURNAL ARTICLE
Junying Zhou, Ningjing Lei, Bo Qin, Mengyu Chen, Shuai Gong, Hao Sun, Luojie Qiu, Fengling Wu, Ruixia Guo, Qian Ma, Yong Li, Lei Chang
Radioresistance is the major obstacle that affects the efficacy of radiotherapy which is an important treatment for cervical cancer. By analyzing the databases, we found that aldolase A (ALDOA), which is a key enzyme in metabolic reprogramming, has a higher expression in cervical cancer patients and is associated with poor prognosis. We detected the expression of ALDOA in the constructed cervical cancer radioresistance (RR) cells by repetitive irradiation and found that it was upregulated compared to the control cells...
December 31, 2023: Cancer Biology & Therapy
https://read.qxmd.com/read/38008473/%C3%AE-glucan-derivatives-as-selective-blockers-of-aldolase-a-computer-aided-structure-optimization-and-the-effects-on-hcc
#20
JOURNAL ARTICLE
Qian-Han Xiao, Ze-Zhi Li, Li Ren, Shu-Yao Wang, Xiao-Qiang Li, Hong-Xin Bai, Rui-Zhi Qiao, Na Tang, Wen-Juan Liu, Jing-Mei Wang, Guang-Yuan Ma, Dian-Chao Dong, Ke-Han Wu, Wei Cao
Aldolase A (ALDOA) promotes hepatocellular carcinoma (HCC) growth and is a potential therapeutic target. A previous study found an α-D-glucan (α-D-(1,6)-Glcp-α-D-(1,4)-Glcp, 10.0:1.0), named HDPS-4II, that could specifically inhibit ALDOA but its activity was not high enough. In this study, the derivatives of α-D-glucan binding to ALDOA were optimized using molecular docking, and its sulfated modification demonstrated the highest affinity with ALDOA among sulfated, carboxylated, and aminated derivatives...
February 1, 2024: Carbohydrate Polymers
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