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https://www.readbyqxmd.com/read/29744280/-paenibacillus-polymyxa-nd25-candidate-genome-for-lignocellulosic-biomass-utilization
#1
Varsha Bohra, Nishant A Dafale, Hemant J Purohit
Genome sequence of Paenibacillus polymyxa ND25 isolated from cow rumen is reported for being a potential candidate in hydrolysis of lignocellulosic plant biomass. Draft genome sequence generated 5.73 Mb data containing 4922 putative protein coding genes, of which 140 are annotated for glycoside hydrolases. P. polymyxa ND25 strain comprises diverse lignocellulolytic components, especially 12 cellulase along with 23 hemicellulases and 11 esterases, signifying its potential for lignocellulose hydrolysis. Subsequent enzyme assay exhibited the potential of strain to produce 0...
May 2018: 3 Biotech
https://www.readbyqxmd.com/read/29685273/silage-review-recent-advances-and-future-uses-of-silage-additives
#2
REVIEW
R E Muck, E M G Nadeau, T A McAllister, F E Contreras-Govea, M C Santos, L Kung
Additives have been available for enhancing silage preservation for decades. This review covers research studies published since 2000 that have investigated the efficacy of silage additives. The review has been divided into 6 categories of additives: homofermentative lactic acid bacteria (LAB), obligate heterofermentative LAB, combination inoculants containing obligate heterofermentative LAB plus homofermentative LAB, other inoculants, chemicals, and enzymes. The homofermentative LAB rapidly decrease pH and increase lactic acid relative to other fermentation products, although a meta-analysis indicated no reduction in pH in corn, sorghum, and sugarcane silages relative to untreated silages...
May 2018: Journal of Dairy Science
https://www.readbyqxmd.com/read/29663699/ruminal-metagenomic-libraries-as-a-source-of-relevant-hemicellulolytic-enzymes-for-biofuel-production
#3
Estrella Duque, Abdelali Daddaoua, Baldo F Cordero, Zulema Udaondo, Carlos Molina-Santiago, Amalia Roca, Jennifer Solano, Eduarda Molina-Alcaide, Ana Segura, Juan-Luis Ramos
The success of second-generation (2G) ethanol technology relies on the efficient transformation of hemicellulose into monosaccharides and, particularly, on the full conversion of xylans into xylose for over 18% of fermentable sugars. We sought new hemicellulases using ruminal liquid, after enrichment of microbes with industrial lignocellulosic substrates and preparation of metagenomic libraries. Among 150 000 fosmid clones tested, we identified 22 clones with endoxylanase activity and 125 with β-xylosidase activity...
April 17, 2018: Microbial Biotechnology
https://www.readbyqxmd.com/read/29627651/integral-process-assessment-of-sugarcane-agricultural-crop-residues-conversion-to-ethanol
#4
Adriana Paola Manfredi, Ignacio Ballesteros, Felicia Sáez, Nora Inés Perotti, María Alejandra Martínez, María José Negro
This work focuses a whole process assessment on post-harvesting sugarcane residues for 2G ethanol production by different saccharification-fermentation conditions at high solids loading, performed after steam explosion, alkaline and acidic pretreatments. Carbohydrate recoveries and enzymatic digestibility results showed that alkali and steam explosion pretreatments were effective for the biomass assayed. Due to a significant improvement (60%) of the glucose released by combining hemicellulases and cellulases only after the NaOH pretreatment, the most favorable process settled comprised an alkali-based pretreatment followed by a pre-saccharification and simultaneous saccharification and fermentation (PSSF)...
March 30, 2018: Bioresource Technology
https://www.readbyqxmd.com/read/29526926/metagenomic-insights-into-lignocellulose-degrading-genes-through-illumina-based-de-novo-sequencing-of-the-microbiome-in-vietnamese-native-goats-rumen
#5
Thi Huyen Do, Ngoc Giang Le, Trong Khoa Dao, Thi Mai Phuong Nguyen, Tung Lam Le, Han Ly Luu, Khanh Hoang Viet Nguyen, Van Lam Nguyen, Lan Anh Le, Thu Nguyet Phung, Nico M van Straalen, Dick Roelofs, Nam Hai Truong
The scarcity of enzymes having an optimal activity in lignocellulose deconstruction is an obstacle for industrial-scale conversion of cellulosic biomass into biofuels. With the aim of mining novel lignocellulolytic enzymes, a ~9 Gb metagenome of bacteria in Vietnamese native goats' rumen was sequenced by Illumina platform. From the data, 821 ORFs encoding carbohydrate esterases (CEs) and polysaccharide lyases (PLs) serving for lignocellulose pre-treatment, 816 ORFs encoding 11 glycoside hydrolase families (GHs) of cellulases, and 2252 ORFs encoding 22 GHs of hemicellulases, were mined...
March 12, 2018: Journal of General and Applied Microbiology
https://www.readbyqxmd.com/read/29507610/deciphering-lignocellulose-deconstruction-by-the-white-rot-fungus-irpex-lacteus-based-on-genomic-and-transcriptomic-analyses
#6
Xing Qin, Xiaoyun Su, Huiying Luo, Rui Ma, Bin Yao, Fuying Ma
Background: Irpex lacteus is one of the most potent white rot fungi for biological pretreatment of lignocellulose for second biofuel production. To elucidate the underlying molecular mechanism involved in lignocellulose deconstruction, genomic and transcriptomic analyses were carried out for I. lacteus CD2 grown in submerged fermentation using ball-milled corn stover as the carbon source. Results: Irpex lacteus CD2 efficiently decomposed 74.9% lignin, 86.3% cellulose, and 83...
2018: Biotechnology for Biofuels
https://www.readbyqxmd.com/read/29492372/the-use-of-agrobacterium-mediated-insertional-mutagenesis-sequencing-to-identify-novel-genes-of-humicola-insolens-involved-in-cellulase-production
#7
Chao Fan, Xinxin Xu, Liya Song, Weishi Guan, Jinyang Li, Bo Liu, Pengjun Shi, Wei Zhang
A transfer DNA (T-DNA)-tagged mutant library of Humicola insolens was screened for mutants with altered cellulase production using the plate-clearing zone assay. Three selected mutants (5-A7, 5-C6, and 13-B7) exhibited significantly depressed FPase, CMCase and xylanase activities compared with the wild-type strain upon shake-flask fermentation, while the pNPCase and pNPGase activities of the three mutants were relatively higher than those of the parental strain. Combined with the results of SDS-PAGE and mass spectrometry, we suggest that expression of the CMCases Cel6B, Cel7B, CMC3, and XynA/B/C was reduced in the mutant strains...
March 2018: 3 Biotech
https://www.readbyqxmd.com/read/29482166/the-composition-of-accessory-enzymes-of-penicillium-chrysogenum-p33-revealed-by-secretome-and-synergistic-effects-with-commercial-cellulase-on-lignocellulose-hydrolysis
#8
Yi Yang, Jinshui Yang, Jiawen Liu, Ruonan Wang, Liang Liu, Fengqin Wang, Hongli Yuan
Herein, we report the secretome of Penicillium chrysogenum P33 under induction of lignocellulose for the first time. A total of 356 proteins were identified, including complete cellulases and numerous hemicellulases. Supplementing a commercial cellulase with increasing dosage of P33 enzyme cocktail from 1 to 5 mg/g substrate increased the release of reducing sugars from delignified corn stover by 21.4% to 106.8%. When 50% cellulase was replaced by P33 enzyme cocktail, release of reducing sugars was 78.6% higher than with cellulase alone...
June 2018: Bioresource Technology
https://www.readbyqxmd.com/read/29467821/function-analysis-of-5-utr-of-the-cellulosomal-xyl-doc-cluster-in-clostridium-papyrosolvens
#9
Xia Zou, Zhenxing Ren, Na Wang, Yin Cheng, Yuanyuan Jiang, Yan Wang, Chenggang Xu
Background: Anaerobic, mesophilic, and cellulolytic Clostridium papyrosolvens produces an efficient cellulolytic extracellular complex named cellulosome that hydrolyzes plant cell wall polysaccharides into simple sugars. Its genome harbors two long cellulosomal clusters: cip - cel operon encoding major cellulosome components (including scaffolding) and xyl - doc gene cluster encoding hemicellulases. Compared with works on cip - cel operon, there are much fewer studies on xyl - doc mainly due to its rare location in cellulolytic clostridia...
2018: Biotechnology for Biofuels
https://www.readbyqxmd.com/read/29458862/comparative-transcriptomic-analysis-of-cerrena-unicolor-revealed-differential-expression-of-genes-engaged-in-degradation-of-various-kinds-of-wood
#10
Grzegorz Janusz, Andrzej Mazur, Jerzy Wielbo, Piotr Koper, Kamil Żebracki, Anna Pawlik, Beata Ciołek, Andrzej Paszczyński, Agnieszka Kubik-Komar
To explore the number of enzymes engaged by Cerrena unicolor FCL139 for wood degradation, the transcriptomes of the fungus growing on birch, ash, maple sawdust and the control liquid medium were analyzed. Among 12,966 gene models predicted for the C. unicolor genome, 10,396 all-unigenes were detected, of which 9567 were found to be expressed in each of the tested growth media. The highest number (107) of unique transcripts was detected during fungus growth in the control liquid medium, while the lowest number (11) - in the fungal culture comprising maple saw dust...
March 2018: Microbiological Research
https://www.readbyqxmd.com/read/29453372/enzyme-mediated-nanofibrillation-of-cellulose-by-the-synergistic-actions-of-an-endoglucanase-lytic-polysaccharide-monooxygenase-lpmo-and-xylanase
#11
Jinguang Hu, Dong Tian, Scott Renneckar, Jack N Saddler
Physiochemical methods have generally been used to "open-up" biomass substrates/pulps and have been the main method used to fibrillate cellulose. However, recent work has shown that canonical cellulase enzymes such as endoglucanases, in combination with "amorphogenesis inducing" proteins such as lytic polysaccharide monooxygenases (LPMO), swollenin and hemicellulases, are able to increase cellulose accessibility. In the work reported here different combinations of endoglucanase, LPMO and xylanase were applied to Kraft pulps to assess their potential to induce fibrillation at low enzyme loading over a short time period...
February 16, 2018: Scientific Reports
https://www.readbyqxmd.com/read/29391488/age-associated-microbiome-shows-the-giant-panda-lives-on-hemicelluloses-not-on-cellulose
#12
Wenping Zhang, Wenbin Liu, Rong Hou, Liang Zhang, Stephan Schmitz-Esser, Huaibo Sun, Junjin Xie, Yunfei Zhang, Chengdong Wang, Lifeng Li, Bisong Yue, He Huang, Hairui Wang, Fujun Shen, Zhihe Zhang
The giant panda feeds almost exclusively on bamboo, a diet highly enriched in lignin and cellulose, but is characterized by a digestive tract similar to carnivores. It is still large unknown if and how the giant panda gut microbiota contributes to lignin and cellulose degradation. Here we show the giant pandas' gut microbiota does not significantly contribute to cellulose and lignin degradation. We found that no operational taxonomic unit had a nearest neighbor identified as a cellulolytic species or strain with a significant higher abundance in juvenile than cubs, a very low abundance of putative lignin and cellulose genes existed in part of analyzing samples but a significant higher abundance of genes involved in starch and hemicellulose degradation in juveniles than cubs...
February 1, 2018: ISME Journal
https://www.readbyqxmd.com/read/29355625/bi-functional-fusion-enzyme-eg-m-xyn-displaying-endoglucanase-and-xylanase-activities-and-its-utility-in-improving-lignocellulose-degradation
#13
Chin-Chung Chen, Guo-Jhan Gao, Ai-Ling Kao, Zheng-Chia Tsai
In this study, the gene fusion of endoglucanase (EG, one of cellulases) from Teleogryllus emma and xylanase (Xyn, one of hemicellulases) from Thermomyces lanuginosus was constructed to generate a fusion enzyme (EG-M-Xyn). Through the expression and purification by ultrafiltration and size-exclusion chromatography, the purified EG-M-Xyn had a molecular weight of 75.5 kDa and exhibited the specific activity of CMCase and xylanase as 306.8 U/mg and 1227.3 U/mg, respectively. The Km values (CMC and beechwood xylan) were 6...
May 2018: International Journal of Biological Macromolecules
https://www.readbyqxmd.com/read/29348141/cellulase6-and-mannanase7-affect-cell-differentiation-and-silique-dehiscence
#14
Hanjun He, Mei Bai, Panpan Tong, Yanting Hu, Ming Yang, Hong Wu
Cellulases, hemicellulases, and pectinases play important roles in fruit development and maturation. Although mutants with defects in these processes have not been reported for cellulase or hemicellulase genes, the pectinases ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE1 (ADPG1) and ADPG2 were previously shown to be essential for silique dehiscence in Arabidopsis ( Arabidopsis thaliana ). Here, we demonstrate that the cellulase gene CELLULASE6 ( CEL6 ) and the hemicellulase gene MANNANASE7 ( MAN7 ) function in the development and dehiscence of Arabidopsis siliques...
March 2018: Plant Physiology
https://www.readbyqxmd.com/read/29235217/heterologous-protein-expression-in-pichia-pastoris-latest-research-progress-and-applications
#15
REVIEW
Veeresh Juturu, Jin Chuan Wu
Pichia pastoris is a well-known platform strain for heterologous protein expression. Over the past five years, different strategies to improve the efficiency of recombinant protein expression by this yeast strain have been developed; these include a patent-free protein expression kit, construction of the P. pastoris CBS7435Ku70 platform strain with its high efficiency in site-specific recombination of plasmid DNA into the genomic DNA, the design of synthetic promoters and their variants by combining different core promoters with multiple putative transcription factors, the generation of mutant GAP promoter variants with various promoter strengths, codon optimization, engineering the α-factor signal sequence by replacing the native glutamic acid at the Kex2 cleavage site with the other 19 natural amino acids and the addition of mammalian signal sequence to the yeast signal sequence, and the co-expression of single chaperones, multiple chaperones or helper proteins that aid in recombinant protein folding...
January 4, 2018: Chembiochem: a European Journal of Chemical Biology
https://www.readbyqxmd.com/read/29224623/deactivation-and-activation-of-lignocellulose-degrading-enzymes-in-the-presence-of-laccase
#16
Rafaela I S Ladeira Ázar, Túlio Morgan, Antonio Carlos Freitas Dos Santos, Eduardo de Aquino Ximenes, Michael R Ladisch, Valéria M Guimarães
Cellulase and hemicellulase activities in a 1:1 ratio of enzymes extracted from Chrysoporthe cubensis and Penicillium pinophilum were evaluated in the presence of known monocomponent phenolic inhibitors and also with phenol mixtures derived from alkali pretreated sugarcane bagasse. The cellulolytic activities from C. cubensis:P. pinophilum displayed a much higher tolerance to phenolic inhibitors than equivalent enzyme activities obtained from Trichoderma reesei and Aspergillus niger. Enzymes from T. reesei and A...
February 2018: Enzyme and Microbial Technology
https://www.readbyqxmd.com/read/29214500/enhancing-cellulase-and-hemicellulase-production-in-trichoderma-orientalis-eu7-22-via-knockout-of-the-crea
#17
Chuannan Long, Yijin Cheng, Jingjing Cui, Jian Liu, Lihui Gan, Bin Zeng, Minnan Long
The role of the transcription factor creA-mediating carbon catabolite repression in Trichoderma orientalis EU7-22 was investigated for cellulase and hemicellulase production. The binary vector pUR5750G/creA::hph was constructed to knock out creA by homologous integration, generating the ΔcreA mutant Trichoderma orientalis CF1D. For strain CF1D, the filter paper activities (FPA), endoglucanase activities (CMC), cellobiohydrolase activity(CBH), β-glucosidase activity (BG), xylanase activity (XYN), and extracellular protein concentration were 1...
January 2018: Molecular Biotechnology
https://www.readbyqxmd.com/read/29180367/gh30-glucuronoxylan-specific-xylanase-from-streptomyces-turgidiscabies-c56
#18
Tomoko Maehara, Haruka Yagi, Tomoko Sato, Mayumi Ohnishi-Kameyama, Zui Fujimoto, Kei Kamino, Yoshiaki Kitamura, Franz St John, Katsuro Yaoi, Satoshi Kaneko
Endoxylanases are important enzymes in bioenergy research because they specifically hydrolyze xylan, the predominant polysaccharide in the hemicellulose fraction of lignocellulosic biomass. For effective biomass utilization, it is important to understand the mechanism of substrate recognition by these enzymes. Recent studies have shown that the substrate specificities of bacterial and fungal endoxylanases classified into glycoside hydrolase family 30 (GH30) were quite different. While the functional differences have been described, the mechanism of substrate recognition is still unknown...
February 15, 2018: Applied and Environmental Microbiology
https://www.readbyqxmd.com/read/29163444/progressive-colonization-of-bacteria-and-degradation-of-rice-straw-in-the-rumen-by-illumina-sequencing
#19
Yanfen Cheng, Ying Wang, Yuanfei Li, Yipeng Zhang, Tianyi Liu, Yu Wang, Thomas J Sharpton, Weiyun Zhu
The aim of this study was to improve the utilization of rice straw as forage in ruminants by investigating the degradation pattern of rice straw in the dairy cow rumen. Ground up rice straw was incubated in situ in the rumens of three Holstein cows over a period of 72 h. The rumen fluid at 0 h and the rice straw at 0.5, 1, 2, 4, 6, 12, 24, 48, and 72 h were collected for analysis of the bacterial community and the degradation of the rice straw. The bacterial community and the carbohydrate-active enzymes in the rumen fluid were analyzed by metagenomics...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/29158777/combined-genome-and-transcriptome-sequencing-to-investigate-the-plant-cell-wall-degrading-enzyme-system-in-the-thermophilic-fungus-malbranchea-cinnamomea
#20
Silvia Hüttner, Thanh Thuy Nguyen, Zoraide Granchi, Thomas Chin-A-Woeng, Dag Ahrén, Johan Larsbrink, Vu Nguyen Thanh, Lisbeth Olsson
Background: Genome and transcriptome sequencing has greatly facilitated the understanding of biomass-degrading mechanisms in a number of fungal species. The information obtained enables the investigation and discovery of genes encoding proteins involved in plant cell wall degradation, which are crucial for saccharification of lignocellulosic biomass in second-generation biorefinery applications. The thermophilic fungus Malbranchea cinnamomea is an efficient producer of many industrially relevant enzymes and a detailed analysis of its genomic content will considerably enhance our understanding of its lignocellulolytic system and promote the discovery of novel proteins...
2017: Biotechnology for Biofuels
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