keyword
MENU ▼
Read by QxMD icon Read
search

Niche

keyword
https://www.readbyqxmd.com/read/29156701/association-of-breast-carcinoma-growth-with-a-non-canonical-axis-of-ifn%C3%AE-ido1-tsp1
#1
Bruno Lopes-Bastos, Liang Jin, Fiona Ruge, Sioned Owen, Andrew Sanders, Christopher Cogle, John Chester, Wen G Jiang, Jun Cai
Reciprocal interactions between cancers and the surrounding microenvironment have an important role in tumour evolution. In this study, our data suggested that through thrombospondin 1 (TSP1), tumour-associated microvessel provides a dormant niche to sustain inactive status of breast invasive ductal carcinoma (IDC) cells. TSP1 levels in the tumour stroma were negatively correlated with vascular indoleamine 2,3-dioxygenase 1 (IDO1) in IDC tissues. IDO1 is an intracellular enzyme initiating the first and rate-limited step of tryptophan breakdown...
October 17, 2017: Oncotarget
https://www.readbyqxmd.com/read/29156542/computational-approaches-for-integrative-analysis-of-the-metabolome-and-microbiome
#2
REVIEW
Jasmine Chong, Jianguo Xia
The study of the microbiome, the totality of all microbes inhabiting the host or an environmental niche, has experienced exponential growth over the past few years. The microbiome contributes functional genes and metabolites, and is an important factor for maintaining health. In this context, metabolomics is increasingly applied to complement sequencing-based approaches (marker genes or shotgun metagenomics) to enable resolution of microbiome-conferred functionalities associated with health. However, analyzing the resulting multi-omics data remains a significant challenge in current microbiome studies...
November 18, 2017: Metabolites
https://www.readbyqxmd.com/read/29156151/limited-evidence-of-fungicide-driven-triazole-resistant-i-aspergillus-fumigatus-i-in-hamilton-canada
#3
Eta Ashu, Ga Young Kim, Patrick Roy-Gayos, Kelly Dong, Adrian Forsythe, Victoria Giglio, Gregory Korfanty, Deborah Yamamura, Jianping Xu
Aspergillus fumigatus is a ubiquitous opportunistic fungal pathogen that can cause aspergillosis in humans. Over the last decade there have been increasing global reports of treatment failure due to triazole resistance. An emerging hypothesis states that agricultural triazole fungicide use causes clinical triazole-resistance. Here we test this hypothesis in Hamilton, Ontario, Canada by examining a total of 195 agricultural, urban and clinical isolates using 9 highly polymorphic microsatellite markers. For each isolate, the in vitro susceptibilities to itraconazole and voriconazole, two triazole drugs commonly used in the management of patients, were also determined...
November 20, 2017: Canadian Journal of Microbiology
https://www.readbyqxmd.com/read/29156083/toward-ecologically-realistic-predictions-of-species-distributions-a-cross-time-example-from-tropical-montane-cloud-forests
#4
Lázaro Guevara, Beth E Gerstner, Jamie M Kass, Robert P Anderson
There is an urgent need for more ecologically realistic models for better predicting the effects of climate change on species' potential geographic distributions. Here we build ecological niche models using MAXENT and test whether selecting predictor variables based on biological knowledge and selecting ecologically realistic response curves can improve cross-time distributional predictions. We also evaluate how the method chosen for extrapolation into nonanalog conditions affects the prediction. We do so by estimating the potential distribution of a montane shrew (Mammalia, Soricidae, Cryptotis mexicanus) at present and the Last Glacial Maximum (LGM)...
November 20, 2017: Global Change Biology
https://www.readbyqxmd.com/read/29155616/uncovering-the-power-of-personality-to-shape-income
#5
Jaap J A Denissen, Wiebke Bleidorn, Marie Hennecke, Maike Luhmann, Ulrich Orth, Jule Specht, Julia Zimmermann
The notion of person-environment fit implies that personal and contextual factors interact in influencing important life outcomes. Using data from 8,458 employed individuals, we examined the combined effects of individuals' actual personality traits and jobs' expert-rated personality demands on earnings. Results from a response surface analysis indicated that the fit between individuals' actual personality and the personality demands of their jobs is a predictor of income. Conclusions of this combined analysis were partly opposite to conclusions reached in previous studies using conventional regression methods...
November 1, 2017: Psychological Science
https://www.readbyqxmd.com/read/29155033/the-gut-virome-of-the-protochordate-model-organism-ciona-intestinalis-subtype-a
#6
Brittany A Leigh, Anni Djurhuus, Mya Breitbart, Larry J Dishaw
The identification of host-specific bacterial and viral communities associated with diverse animals has led to the concept of the metaorganism, which defines the animal and all of its associated microbes as a single unit. Here we sequence the viruses found in the gut (i.e., the gut virome) of the marine invertebrate model system, Ciona intestinalis subtype A, in samples collected one year apart. We present evidence for a host-associated virome that is distinct from the surrounding seawater and contains some temporally-stable members...
November 15, 2017: Virus Research
https://www.readbyqxmd.com/read/29155008/-alternative-fuels-contributing-to-mitochondrial-electron-transport-importance-of-non-classical-pathways-in-the-diversity-of-animal-metabolism
#7
REVIEW
Allison E McDonald, Nicolas Pichaud, Charles-A Darveau
The study of glycolysis, the TCA cycle, and oxidative phosphorylation in animals has yielded a wealth of information about bioenergetics. Less is known about how animals use fuels other than glucose and less characterized enzymes that are also used to provide electrons to the electron transport system. It has become clear that bioenergetic flexibility is employed by a wide variety of animals in order to successfully grow, maintain cells, and reproduce, and has contributed to the exploitation of new environments and ecological niches through evolution...
November 15, 2017: Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology
https://www.readbyqxmd.com/read/29154990/exosomes-derived-from-human-umbilical-vein-endothelial-cells-promote-neural-stem-cell-expansion-while-maintain-their-stemness-in-culture
#8
Yi-Zhe Zhang, Fan Liu, Chang-Geng Song, Xiu-Li Cao, Yu-Fei Zhang, Hai-Ning Wu, Chen-Jun Guo, Yong-Qiang Li, Qi-Jun Zheng, Min-Hua Zheng, Hua Han
The neural stem cell (NSC) niche in subventricular zone (SVZ) of adult mammalian brain contains dense vascular plexus, where endothelial cells (ECs) regulate NSCs by releasing plenty of angiocrine factors. However, the role of ECs-derived exosomes, a novel type of mediators of intercellular communications, in the regulation of NSCs remains unclear. In the current study, primary NSCs isolated from embryonic mouse brains form more neurospheres when cultured in the presence of human umbilical vein endothelial cells (HUVECs)...
November 15, 2017: Biochemical and Biophysical Research Communications
https://www.readbyqxmd.com/read/29154441/root-type-and-soil-phosphate-determine-the-taxonomic-landscape-of-colonizing-fungi-and-the-transcriptome-of-field-grown-maize-roots
#9
Peng Yu, Chao Wang, Jutta A Baldauf, Huanhuan Tai, Caroline Gutjahr, Frank Hochholdinger, Chunjian Li
Different root types of plants are colonized by a myriad of soil microorganisms, including fungi, which influence plant health and performance. The distinct functional and metabolic characteristics of these root types may influence root type-inhabiting fungal communities. We performed internal transcribed spacer (ITS) DNA profiling to determine the composition of fungal communities in field-grown axial and lateral roots of maize (Zea mays) and in response to two different soil phosphate (P) regimes. In parallel, these root types were subjected to transcriptome profiling by RNA sequencing (RNA-Seq)...
November 20, 2017: New Phytologist
https://www.readbyqxmd.com/read/29153862/tumor-necrosis-factor-alpha-in-sleep-regulation
#10
REVIEW
Matthew D Rockstrom, Liangyu Chen, Ping Taishi, Joseph T Nguyen, Cody M Gibbons, Sigrid C Veasey, James M Krueger
This review details tumor necrosis factor alpha (TNF) biology and its role in sleep, and describes how TNF medications influence sleep/wake activity. Substantial evidence from healthy young animals indicates acute enhancement or inhibition of endogenous brain TNF respectively promotes and inhibits sleep. In contrast, the role of TNF in sleep in most human studies involves pathological conditions associated with chronic elevations of systemic TNF and disrupted sleep. Normalization of TNF levels in such patients improves sleep...
November 16, 2017: Sleep Medicine Reviews
https://www.readbyqxmd.com/read/29153593/the-molecular-phenotypes-of-ureteral-telocytes-are-layer-specific
#11
M A Dobra, A D Vrapciu, F Pop, N Petre, M C Rusu
Telocytes (TC) are the delicate interstitial (stromal) cells defined by their long, thin and moniliform processes termed telopodes. Numerous studies determined that different subsets of telocytes populate almost all tissues and attempted to relate these subsets to various functions, from cell signaling to tissue repair and regeneration. Extremely few studies addressed the urinary tract though few data on the molecular pattern of the urinary TCs actually exist. We therefore hypothesized that subsets of urinary TCs co-localize within the human ureter and we aimed at performing an immunohistochemical study to evaluate the tissue-specific molecular pattern of TCs...
November 16, 2017: Acta Histochemica
https://www.readbyqxmd.com/read/29153257/pseudomonas-silesiensis-sp-nov-strain-a3-t-isolated-from-a-biological-pesticide-sewage-treatment-plant-and-analysis-of-the-complete-genome-sequence
#12
Michał A Kaminski, Ewa M Furmanczyk, Adam Sobczak, Andrzej Dziembowski, Leszek Lipinski
Microorganisms classified in to the Pseudomonas genus are a ubiquitous bacteria inhabiting variety of environmental niches and have been isolated from soil, sediment, water and different parts of higher organisms (plants and animals). Members of this genus are known for their metabolic versatility and are able to utilize different chemical compounds as a source of carbon, nitrogen or phosphorus, which makes them an interesting microorganism for bioremediation or bio-transformation. Moreover, Pseudomonas sp...
November 3, 2017: Systematic and Applied Microbiology
https://www.readbyqxmd.com/read/29152817/how-complex-should-models-be-comparing-correlative-and-mechanistic-range-dynamics-models
#13
Damien A Fordham, Cleo Bertelsmeier, Barry W Brook, Regan Early, Dora Neto, Stuart C Brown, Sébastien Ollier, Miguel B Araújo
Criticism has been levelled at climate-change-induced forecasts of species range shifts that do not account explicitly for complex population dynamics. The relative importance of such dynamics under climate change is, however, undetermined because direct tests comparing the performance of demographic models vs. simpler ecological niche models are still lacking owing to difficulties in evaluating forecasts using real-world data. We provide the first comparison of the skill of coupled ecological-niche-population models and ecological niche models in predicting documented shifts in the ranges of 20 British breeding bird species across a 40-year period...
November 20, 2017: Global Change Biology
https://www.readbyqxmd.com/read/29152581/the-candida-albicans-tor-activating-gtpases-gtr1-and-rhb1-coregulate-starvation-responses-and-biofilm-formation
#14
Peter R Flanagan, Ning-Ning Liu, Darren J Fitzpatrick, Karsten Hokamp, Julia R Köhler, Gary P Moran
Target of rapamycin complex 1 (TORC1) is an essential regulator of metabolism in eukaryotic cells and in the fungal pathogen Candida albicans regulates morphogenesis and nitrogen acquisition. Gtr1 encodes a highly conserved GTPase that in Saccharomyces cerevisiae regulates nitrogen sensing and TORC1 activation. Here, we characterize the role of C. albicans GTR1 in TORC1 activation and compare it with the previously characterized GTPase Rhb1. A homozygous gtr1/gtr1 mutant exhibited impaired TORC1-mediated phosphorylation of ribosomal protein S6 and increased susceptibility to rapamycin...
November 2017: MSphere
https://www.readbyqxmd.com/read/29152228/cd1-from-molecules-to-diseases
#15
REVIEW
D Branch Moody, Sara Suliman
The human cluster of differentiation (CD)1 system for antigen display is comprised of four types of antigen-presenting molecules, each with a distinct functional niche: CD1a, CD1b, CD1c, and CD1d. Whereas CD1 proteins were thought solely to influence T-cell responses through display of amphipathic lipids, recent studies emphasize the role of direct contacts between the T-cell receptor and CD1 itself. Moving from molecules to diseases, new research approaches emphasize human CD1-transgenic mouse models and the study of human polyclonal T cells in vivo or ex vivo in disease states...
2017: F1000Research
https://www.readbyqxmd.com/read/29152202/assessing-the-potential-of-translocating-vulnerable-forest-birds-by-searching-for-novel-and-enduring-climatic-ranges
#16
Lucas B Fortini, Lauren R Kaiser, Adam E Vorsino, Eben H Paxton, James D Jacobi
Hawaiian forest birds are imperiled, with fewer than half the original >40 species remaining extant. Recent studies document ongoing rapid population decline and project complete climate-based range losses for the critically endangered Kaua'i endemics 'akeke'e (Loxops caeruleirostris) and 'akikiki (Oreomystis bairdi) by end-of-century due to projected warming. Climate change facilitates the upward expansion of avian malaria into native high elevation forests where disease was historically absent. While intensified conservation efforts attempt to safeguard these species and their habitats, the magnitude of potential loss and the urgency of this situation require all conservation options to be seriously considered...
November 2017: Ecology and Evolution
https://www.readbyqxmd.com/read/29152186/cumulative-effects-of-climate-and-landscape-change-drive-spatial-distribution-of-rocky-mountain-wolverine-gulo-gulo-l
#17
Nicole Heim, Jason T Fisher, Anthony Clevenger, John Paczkowski, John Volpe
Contemporary landscapes are subject to a multitude of human-derived stressors. Effects of such stressors are increasingly realized by population declines and large-scale extirpation of taxa worldwide. Most notably, cumulative effects of climate and landscape change can limit species' local adaptation and dispersal capabilities, thereby reducing realized niche space and range extent. Resolving the cumulative effects of multiple stressors on species persistence is a pressing challenge in ecology, especially for declining species...
November 2017: Ecology and Evolution
https://www.readbyqxmd.com/read/29152182/selective-regimes-and-functional-anatomy-in-the-mustelid-forelimb-diversification-toward-specializations-for-climbing-digging-and-swimming
#18
Brandon M Kilbourne
Anatomical traits associated with locomotion often exhibit specializations for ecological niche, suggesting that locomotor specializations may constitute selective regimes acting on limb skeletal traits. To test this, I sampled 42 species of Mustelidae, encompassing climbing, digging, and swimming specialists, and determined whether trait variation reflects locomotor specialization by performing a principal components analysis on 14 forelimb traits. In addition to Brownian motion models, three Ornstein-Uhlenbeck models of selective regimes were applied to PC scores describing trait variation among mustelids: one without a priori defined phenotypic optima, one with optima based upon locomotor habit, and one with a single phenotypic optimum...
November 2017: Ecology and Evolution
https://www.readbyqxmd.com/read/29152168/pollination-by-the-locally-endangered-island-flying-fox-pteropus-hypomelanus-enhances-fruit-production-of-the-economically-important-durian-durio-zibethinus
#19
Sheema A Aziz, Gopalasamy R Clements, Kim R McConkey, Tuanjit Sritongchuay, Saifful Pathil, Muhammad Nur Hafizi Abu Yazid, Ahimsa Campos-Arceiz, Pierre-Michel Forget, Sara Bumrungsri
Fruit bats provide valuable pollination services to humans through a unique coevolutionary relationship with chiropterophilous plants. However, chiropterophily in the Old World and the pollination roles of large bats, such as flying foxes (Pteropus spp., Acerodon spp., Desmalopex spp.), are still poorly understood and require further elucidation. Efforts to protect these bats have been hampered by a lack of basic quantitative information on their role as ecosystem service providers. Here, we investigate the role of the locally endangered island flying fox Pteropus hypomelanus in the pollination ecology of durian (Durio zibethinus), an economically important crop in Southeast Asia...
November 2017: Ecology and Evolution
https://www.readbyqxmd.com/read/29151866/amphibian-species-traits-evolutionary-history-and-environment-predict-batrachochytrium-dendrobatidis-infection-patterns-but-not-extinction-risk
#20
Dan A Greenberg, Wendy J Palen, Arne Ø Mooers
The fungal pathogen Batrachochytrium dendrobatidis (B. dendrobatidis) has emerged as a major agent of amphibian extinction, requiring conservation intervention for many susceptible species. Identifying susceptible species is challenging, but many aspects of species biology are predicted to influence the evolution of host resistance, tolerance, or avoidance strategies towards disease. In turn, we may expect species exhibiting these distinct strategies to differ in their ability to survive epizootic disease outbreaks...
December 2017: Evolutionary Applications
keyword
keyword
4377
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"