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https://www.readbyqxmd.com/read/27924919/a-central-cavity-within-the-holo-translocon-suggests-a-mechanism-for-membrane-protein-insertion
#1
Mathieu Botte, Nathan R Zaccai, Jelger Lycklama À Nijeholt, Remy Martin, Kèvin Knoops, Gabor Papai, Juan Zou, Aurélien Deniaud, Manikandan Karuppasamy, Qiyang Jiang, Abhishek Singha Roy, Klaus Schulten, Patrick Schultz, Juri Rappsilber, Giuseppe Zaccai, Imre Berger, Ian Collinson, Christiane Schaffitzel
The conserved SecYEG protein-conducting channel and the accessory proteins SecDF-YajC and YidC constitute the bacterial holo-translocon (HTL), capable of protein-secretion and membrane-protein insertion. By employing an integrative approach combining small-angle neutron scattering (SANS), low-resolution electron microscopy and biophysical analyses we determined the arrangement of the proteins and lipids within the super-complex. The results guided the placement of X-ray structures of individual HTL components and allowed the proposal of a model of the functional translocon...
December 7, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27920888/development-of-a-high-resolution-melting-analysis-method-for-cyp2c19-17-genotyping-in-healthy-volunteers
#2
Zahra Ghasemi, Mehrdad Hashemi, Mahsa Ejabati, Seyyed Meisam Ebrahimi, Hamidreza Kheiri Manjili, Ali Sharafi, Ali Ramazani
BACKGROUND: Genetic polymorphisms of drug metabolisms by cytochrome P450 (P450s) could affect drug response, attracting particular interest in the pharmacogenetics. Due to the importance of CYP2C19* 17 allele and its capability of super- fast metabolism and also lack of information about distribution of the alleles in Iranian population, this research aimed to use High Resolution Melting (HRM) method compared to PCR-RFLP for genotyping healthy Iranian population. METHODS: Blood samples were collected from 100 healthy Iranian volunteers...
October 2016: Avicenna Journal of Medical Biotechnology
https://www.readbyqxmd.com/read/27917008/visualization-of-neutrophil-extracellular-traps-and-fibrin-meshwork-in-human-fibrinopurulent-inflammatory-lesions-iii-correlative-light-and-electron-microscopic-study
#3
Takanori Onouchi, Kazuya Shiogama, Yasuyoshi Mizutani, Takashi Takaki, Yutaka Tsutsumi
Neutrophil extracellular traps (NETs) released from dead neutrophils at the site of inflammation represent webs of neutrophilic DNA stretches dotted with granule-derived antimicrobial proteins, including lactoferrin, and play important roles in innate immunity against microbial infection. We have shown the coexistence of NETs and fibrin meshwork in varied fibrinopurulent inflammatory lesions at both light and electron microscopic levels. In the present study, correlative light and electron microscopy (CLEM) employing confocal laser scanning microscopy and scanning electron microscopy was performed to bridge light and electron microscopic images of NETs and fibrin fibrils in formalin-fixed, paraffin-embedded, autopsied lung sections of legionnaire's pneumonia...
November 1, 2016: Acta Histochemica et Cytochemica
https://www.readbyqxmd.com/read/27914080/immobilization-techniques-of-bacteria-for-live-super-resolution-imaging-using-structured-illumination-microscopy
#4
Amy L Bottomley, Lynne Turnbull, Cynthia B Whitchurch, Elizabeth J Harry
Advancements in optical microscopy technology have allowed huge progression in the ability to understand protein structure and dynamics in live bacterial cells using fluorescence microscopy. Paramount to high-quality microscopy is good sample preparation to avoid bacterial cell movement that can result in motion blur during image acquisition. Here, we describe two techniques of sample preparation that reduce unwanted cell movement and are suitable for application to a number of bacterial species and imaging methods...
2017: Methods in Molecular Biology
https://www.readbyqxmd.com/read/27914029/mid-term-results-and-responsiveness-predictors-after-two-step-single-anastomosis-duodeno-ileal-bypass-with-sleeve-gastrectomy
#5
José M Balibrea, Ramón Vilallonga, Marta Hidalgo, Andreea Ciudin, Óscar González, Enric Caubet, Andrés Sánchez-Pernaute, José M Fort, Manel Armengol-Carrasco
BACKGROUND: In patients with insufficient weight loss after sleeve gastrectomy (SG) or in super obese individuals, among many surgical options available, a single-anastomosis duodeno-ileal bypass (SADI) after SG (SADI-S) could be considered. Due to the limited information available about the use of SADI as a second-step procedure, the objective of this study was to evaluate the mid-term results and responsiveness of SADI after sleeve gastrectomy. METHODS: We present prospective data from 30 consecutive patients with a mean BMI of 40...
December 2, 2016: Obesity Surgery
https://www.readbyqxmd.com/read/27910527/an-fpga-based-bolometer-for-the-mast-u-super-x-divertor
#6
Jack Lovell, Graham Naylor, Anthony Field, Peter Drewelow, Ray Sharples
A new resistive bolometer system has been developed for MAST-Upgrade. It will measure radiated power in the new Super-X divertor, with millisecond time resolution, along 16 vertical and 16 horizontal lines of sight. The system uses a Xilinx Zynq-7000 series Field-Programmable Gate Array (FPGA) in the D-TACQ ACQ2106 carrier to perform real time data acquisition and signal processing. The FPGA enables AC-synchronous detection using high performance digital filtering to achieve a high signal-to-noise ratio and will be able to output processed data in real time with millisecond latency...
November 2016: Review of Scientific Instruments
https://www.readbyqxmd.com/read/27910495/cross-calibration-of-fuji-tr-image-plate-and-rar-2492-x-ray-film-to-determine-the-response-of-a-ditabis-super-micron-image-plate-scanner
#7
G Dunham, E C Harding, G P Loisel, P W Lake, L B Nielsen-Weber
Fuji TR image plate is frequently used as a replacement detector medium for x-ray imaging and spectroscopy diagnostics at NIF, Omega, and Z facilities. However, the familiar Fuji BAS line of image plate scanners is no longer supported by the industry, and so a replacement scanning system is needed. While the General Electric Typhoon line of scanners could replace the Fuji systems, the shift away from photo stimulated luminescence units to 16-bit grayscale Tag Image File Format (TIFF) leaves a discontinuity when comparing data collected from both systems...
November 2016: Review of Scientific Instruments
https://www.readbyqxmd.com/read/27910331/next-generation-gamma-ray-cherenkov-detectors-for-the-national-ignition-facility
#8
H W Herrmann, Y H Kim, A M McEvoy, A B Zylstra, C S Young, F E Lopez, J R Griego, V E Fatherley, J A Oertel, W Stoeffl, H Khater, J E Hernandez, A Carpenter, M S Rubery, C J Horsfield, S Gales, A Leatherland, T Hilsabeck, J D Kilkenny, R M Malone, J D Hares, J Milnes, W T Shmayda, C Stoeckl, S H Batha
The newest generation of Gas Cherenkov Detector (GCD-3) employed in Inertial Confinement Fusion experiments at the Omega Laser Facility has provided improved performance over previous generations. Comparison of reaction histories measured using two different deuterium-tritium fusion products, namely gamma rays using GCD and neutrons using Neutron Temporal Diagnostic (NTD), have provided added credibility to both techniques. GCD-3 is now being brought to the National Ignition Facility (NIF) to supplement the existing Gamma Reaction History (GRH-6m) located 6 m from target chamber center (TCC)...
November 2016: Review of Scientific Instruments
https://www.readbyqxmd.com/read/27909248/regulation-of-chemokine-receptor-ccr2-recycling-by-filamin-a-phosphorylation
#9
Mònica Pons, Ismael Izquierdo, Mireia Andreu-Carbó, Georgina Garrido, Jesús Planagumà, Olivia Muriel, M Isabel Geli, Anna M Aragay
Proper endosomal trafficking of ligand-activated G protein-coupled receptors (GPCRs) is essential to spatiotemporally tune their physiological responses. For the monocyte chemoattractant receptor 2 (CCR2B), endocytic recycling is important to sustain monocyte migration; while filamin A (FLNa) is essential for CCL2-induced monocyte migration. Here, we analyze the role of FLNa in the trafficking of CCR2B along the endocytic pathway. In FLNa knockdown cells, activated CCR2B accumulated in enlarged EEA-1-positive endosomes, which exhibited slow movement and fast fluorescence recovery, suggesting an imbalance between receptor entry and exit rates...
December 1, 2016: Journal of Cell Science
https://www.readbyqxmd.com/read/27906373/efficient-homogeneous-illumination-and-optical-sectioning-for-quantitative-single-molecule-localization-microscopy
#10
Joran Deschamps, Andreas Rowald, Jonas Ries
Single-molecule localization microscopy (SMLM) relies on the switching of fluorescent molecules between a fluorescent and a dark state to achieve super resolution. This process is inherently dependent on the intensity distribution of the laser light used for both activation from the dark state and excitation of the bright state. Typically, laser light is coupled directly or via a single-mode fiber into the microscope, which leads to a Gaussian intensity profile in total internal reflection (TIR) or epi illumination...
November 28, 2016: Optics Express
https://www.readbyqxmd.com/read/27906367/cultivation-of-lemon-fields
#11
Sushanta Kumar Pal, P Senthilkumaran
The sign rule requires that adjacent singularities on a contour have opposite signs and hence cultivation of lemon only fields poses problem as all lemons have positive index. In this paper we show that the interference of three linearly polarized plane waves can create regions of ellipse and vector fields in 2-dimensions (2D) in which a lemon lattice is interlaced in a V-point lattice. The lemons appear at intensity maxima of the lattice structure while the V-points take care of index conservation by sitting at intensity minima...
November 28, 2016: Optics Express
https://www.readbyqxmd.com/read/27906223/axial-super-resolution-evanescent-wave-tomography
#12
Sarang Pendharker, Swapnali Shende, Ward Newman, Stephen Ogg, Neda Nazemifard, Zubin Jacob
Optical tomographic reconstruction of a three-dimensional (3D) nanoscale specimen is hindered by the axial diffraction limit, which is 2-3 times worse than the focal plane resolution. We propose and experimentally demonstrate an axial super-resolution evanescent wave tomography method that enables the use of regular evanescent wave microscopes like the total internal reflection fluorescence microscope beyond surface imaging and achieve a tomographic reconstruction with axial super-resolution. Our proposed method based on Fourier reconstruction achieves axial super-resolution by extracting information from multiple sets of 3D fluorescence images when the sample is illuminated by an evanescent wave...
December 1, 2016: Optics Letters
https://www.readbyqxmd.com/read/27905498/super-resolution-imaging-using-the-spatial-frequency-filtered-intensity-fluctuation-correlation
#13
Jane Sprigg, Tao Peng, Yanhua Shih
We report an experimental demonstration of a nonclassical imaging mechanism with super-resolving power beyond the Rayleigh limit. When the classical image is completely blurred out due to the use of a small imaging lens, by taking advantage of the intensity fluctuation correlation of thermal light, the demonstrated camera recovered the image of the resolution testing gauge. This method could be adapted to long distance imaging, such as satellite imaging, which requires large diameter camera lenses to achieve high image resolution...
December 1, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27897207/super-resolution-imaging-at-mid-infrared-waveband-in-graphene-nanocavity-formed-on-meta-surface
#14
Jingzhong Yang, Taisheng Wang, Zuolong Chen, Bingliang Hu, Weixing Yu
Plasmonic structured illumination microscopy (PSIM) is one of the promising wide filed optical imaging methods, which takes advantage of the surface plasmons to break the optical diffraction limit and thus to achieve a super-resolution optical image. To further improve the imaging resolution of PSIM, we propose in this work a so called graphene nanocavity on meta-surface structure (GNMS) to excite graphene surface plasmons with a deep sub-wavelength at mid-infrared waveband. It is found that surface plasmonic interference pattern with a period of around 52 nm can be achieved in graphene nanocavity formed on structured meta-surface for a 7 μm wavelength incident light...
November 29, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27893705/gephyrin-binding-peptides-visualize-postsynaptic-sites-and-modulate-neurotransmission
#15
Hans Michael Maric, Torben Johann Hausrat, Franziska Neubert, Nils Ole Dalby, Sören Doose, Markus Sauer, Matthias Kneussel, Kristian Strømgaard
γ-Aminobutyric acid type A and glycine receptors are the major mediators of fast synaptic inhibition in the human central nervous system and are established drug targets. However, all drugs targeting these receptors bind to the extracellular ligand-binding domain of the receptors, which inherently is associated with perturbation of the basic physiological action. Here we pursue a fundamentally different approach, by instead targeting the intracellular receptor-gephyrin interaction. First, we defined the gephyrin peptide-binding consensus sequence, which facilitated the development of gephyrin super-binding peptides and later effective affinity probes for the isolation of native gephyrin...
November 28, 2016: Nature Chemical Biology
https://www.readbyqxmd.com/read/27893388/sparse-representation-based-multiple-frame-video-super-resolution
#16
Qiqin Dai, Seunghwan Yoo, Armin Kappeler, Aggelos K Katsaggelos
In this paper, we propose two multiple-frame superresolution (SR) algorithms based on dictionary learning and motion estimation. First, we adopt the use of video bilevel dictionary learning which has been used for single-frame SR. It is extended to multiple frames by using motion estimation with subpixel accuracy. We propose a batch and a temporally recursive multi-frame SR algorithm, which improve over single frame SR. Finally, we propose a novel dictionary learning algorithm utilizing consecutive video frames, rather than still images or individual video frames, which further improves the performance of the video SR algorithms...
November 22, 2016: IEEE Transactions on Image Processing: a Publication of the IEEE Signal Processing Society
https://www.readbyqxmd.com/read/27890922/progress-in-imaging-methods-insights-gained-into-plasmodium-biology
#17
Mariana De Niz, Paul-Christian Burda, Gesine Kaiser, Hernando A Del Portillo, Tobias Spielmann, Freddy Frischknecht, Volker T Heussler
Over the past decade, major advances in imaging techniques have enhanced our understanding of Plasmodium spp. parasites and their interplay with mammalian hosts and mosquito vectors. Cryoelectron tomography, cryo-X-ray tomography and super-resolution microscopy have shifted paradigms of sporozoite and gametocyte structure, the process of erythrocyte invasion by merozoites, and the architecture of Maurer's clefts. Intravital time-lapse imaging has been revolutionary for our understanding of pre-erythrocytic stages of rodent Plasmodium parasites...
November 28, 2016: Nature Reviews. Microbiology
https://www.readbyqxmd.com/read/27888215/super-resolution-microscopy-reveals-the-reorganization-of-glut4-on-plasma-membrane-regulated-by-insulin-resistance
#18
Lan Gao, Junling Chen, Jing Gao, Hongda Wang, Wenyong Xiong
GLUT4 is essential for glucose uptake in skeletal muscles and adipocytes, which play central roles in whole-body glucose metabolism. Here, using direct stochastic optical reconstruction microscopy (dSTORM) to investigate the characteristics of the plasma membrane (PM) fused GLUT4 at the single-molecule level, we demonstrated that insulin and insulin resistance regulated the spatial organization of GLUT4 in adipocytes. Stimulation of insulin shifted the balance of GLUT4 on the PM toward a more dispersed configuration...
November 25, 2016: Journal of Cell Science
https://www.readbyqxmd.com/read/27886055/identification-while-scanning-of-a-multi-aircraft-formation-based-on-sparse-recovery-for-narrowband-radar
#19
Yuan Jiang, Jia Xu, Shi-Bao Peng, Er-Ke Mao, Teng Long, Ying-Ning Peng
It is known that the identification performance of a multi-aircraft formation (MAF) of narrowband radar mainly depends on the time on target (TOT). To realize the identification task in one rotated scan with limited TOT, the paper proposes a novel identification-while-scanning (IWS) method based on sparse recovery to maintain high rotating speed and super-resolution for MAF identification, simultaneously. First, a multiple chirp signal model is established for MAF in a single scan, where different aircraft may have different Doppler centers and Doppler rates...
November 23, 2016: Sensors
https://www.readbyqxmd.com/read/27885259/trackntrace-a-simple-and-extendable-open-source-framework-for-developing-single-molecule-localization-and-tracking-algorithms
#20
Simon Christoph Stein, Jan Thiart
Super-resolution localization microscopy and single particle tracking are important tools for fluorescence microscopy. Both rely on detecting, and tracking, a large number of fluorescent markers using increasingly sophisticated computer algorithms. However, this rise in complexity makes it difficult to fine-tune parameters and detect inconsistencies, improve existing routines, or develop new approaches founded on established principles. We present an open-source MATLAB framework for single molecule localization, tracking and super-resolution applications...
November 25, 2016: Scientific Reports
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