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polyketide synthase

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https://www.readbyqxmd.com/read/27913218/methylotrophic-yeast-pichia-pastoris-as-a-chassis-organism-for-polyketide-synthesis-via-the-full-citrinin-biosynthetic-pathway
#1
Ying Xue, Chuixing Kong, Wei Shen, Chenxiao Bai, Yanna Ren, Xiangshan Zhou, Yuanxing Zhang, Menghao Cai
With the rapid development of synthetic biology, exploring various chassis organisms has become necessary to improve the heterologous biosynthesis of natural products and pharmaceuticals. In this study, we tested the potential of the industrial methylotrophic yeast strain Pichia pastoris for the heterologous synthesis of polyketides. A recombinant P. pastoris GS-pksCT-npgA carrying the Monascus purpureus citrinin polyketide synthase gene pksCT and the Aspergillus nidulans phosphopantetheinyl transferase gene npgA was constructed...
November 29, 2016: Journal of Biotechnology
https://www.readbyqxmd.com/read/27909940/enhancement-of-rapamycin-production-by-metabolic-engineering-in-streptomyces-hygroscopicus-based-on-genome-scale-metabolic-model
#2
Lanqing Dang, Jiao Liu, Cheng Wang, Huanhuan Liu, Jianping Wen
Rapamycin, as a macrocyclic polyketide with immunosuppressive, antifungal, and anti-tumor activity produced by Streptomyces hygroscopicus, is receiving considerable attention for its significant contribution in medical field. However, the production capacity of the wild strain is very low. Hereby, a computational guided engineering approach was proposed to improve the capability of rapamycin production. First, a genome-scale metabolic model of Streptomyces hygroscopicus ATCC 29253 was constructed based on its annotated genome and biochemical information...
December 1, 2016: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/27906500/phylogenetic-studies-gene-cluster-analysis-and-enzymatic-reaction-support-anthrahydroquinone-reduction-as-the-physiological-function-of-fungal-17%C3%AE-hydroxysteroid-dehydrogenase
#3
Leon Fürtges, David Conradt, Michael A Schätzle, Shailesh Kumar Singh, Nada Kraševec, Tea Lanišnik Rižner, Michael Müller, Syed Masood Husain
17β-Hydroxysteroid dehydrogenase (17β-HSDcl) from the filamentous fungus Curvularia lunata (teleomorph Cochliobolus lunatus) catalyzes NADP(H)-dependent oxidoreductions of androgens and estrogens. Despite detailed biochemical and structural characterization of 17β-HSDcl, its physiological function remains unknown. On the basis of amino acid sequence alignment, phylogenetic studies, and the recent identification of the physiological substrates of the homologous MdpC from Aspergillus nidulans and AflM from Aspergillus parasiticus, we propose an anthrahydroquinone as the physiological substrate of 17β-HSDcl...
December 1, 2016: Chembiochem: a European Journal of Chemical Biology
https://www.readbyqxmd.com/read/27905873/comparative-genomics-of-beauveria-bassiana-uncovering-signatures-of-virulence-against-mosquitoes
#4
Claudio A Valero-Jiménez, Luigi Faino, Daphne Spring In't Veld, Sandra Smit, Bas J Zwaan, Jan A L van Kan
BACKGROUND: Entomopathogenic fungi such as Beauveria bassiana are promising biological agents for control of malaria mosquitoes. Indeed, infection with B. bassiana reduces the lifespan of mosquitoes in the laboratory and in the field. Natural isolates of B. bassiana show up to 10-fold differences in virulence between the most and the least virulent isolate. In this study, we sequenced the genomes of five isolates representing the extremes of low/high virulence and three RNA libraries, and applied a genome comparison approach to uncover genetic mechanisms underpinning virulence...
December 1, 2016: BMC Genomics
https://www.readbyqxmd.com/read/27903443/biochemical-and-genetic-basis-of-orsellinic-acid-biosynthesis-and-prenylation-in-a-stereaceous-basidiomycete
#5
Jana Braesel, Janis Fricke, Daniel Schwenk, Dirk Hoffmeister
The prenylphenols are a class of natural products that have been frequently isolated from basidiomycetes, e.g., from the genus Stereum (false turkey tail fungi) and other Russulales as well as from ascomycetes. Biosynthetically, these compounds are considered hybrids, as the orsellinic acid moiety is a polyketide and the prenyl side chain originates from the terpene metabolism, although no literature on the genetic and biochemical background of the biosynthesis is available. In a stereaceous basidiomycete, referred to as BY1, a new prenylphenol, now termed cloquetin, was identified and its structure elucidated by mass spectrometry and nuclear magnetic resonance spectroscopy...
November 26, 2016: Fungal Genetics and Biology: FG & B
https://www.readbyqxmd.com/read/27902426/unravelling-the-biosynthesis-of-pyriculol-in-the-rice-blast-fungus-magnaporthe-oryzae
#6
Stefan Jacob, Thomas Grötsch, Andrew J Foster, Anja Schüffler, Patrick H Rieger, Louis P Sandjo, Johannes C Liermann, Till Opatz, Eckhard Thines
Pyriculol was isolated from the rice blast fungus Magnaporthe oryzae and found to induce lesion formation on rice leaves. These findings suggest that it could be involved in virulence. The gene MoPKS19 was identified to encode a polyketide synthase essential for the production of the polyketide pyriculol in the rice blast fungus Magnaporthe oryzae. The transcript abundance of MoPKS19 correlates with the biosynthesis rate of pyriculol in a time-dependent manner. Furthermore, gene inactivation of MoPKS19 resulted in a mutant unable to produce pyriculol, pyriculariol and their dihydro derivatives...
November 17, 2016: Microbiology
https://www.readbyqxmd.com/read/27899334/complete-genome-sequence-of-bacillus-velezensis-m75-a-biocontrol-agent-against-fungal-plant-pathogens-isolated-from-cotton-waste
#7
Sang Yoon Kim, Sang Yeob Lee, Hang-Yeon Weon, Mee Kyung Sang, Jaekyeong Song
Bacillus species have been widely used as biological control agents in agricultural fields due to their ability to suppress plant pathogens. Bacillus velezensis M75 was isolated from cotton waste used for mushroom cultivation in Korea, and was found to be antagonistic to fungal plant pathogens. Here, we report the complete genome sequence of the M75 strain, which has a 4,007,450-bp single circular chromosome with 3,921 genes and a G+C content of 46.60%. The genome contained operons encoding various non-ribosomal peptide synthetases and polyketide synthases, which are responsible for the biosynthesis of secondary metabolites...
November 26, 2016: Journal of Biotechnology
https://www.readbyqxmd.com/read/27897367/bifunctionality-of-activ-as-a-cyclase-thioesterase-revealed-by-in-vitro-reconstitution-of-actinorhodin-biosynthesis-in-streptomyces-coelicolor-a3-2
#8
Takaaki Taguchi, Takayoshi Awakawa, Yukitaka Nishihara, Michiho Kawamura, Yasuo Ohnishi, Koji Ichinose
Type II polyketide synthase (PKS) iteratively generates a nascent polyketide thioester of acyl carrier protein (ACP), which is structurally modified to produce an ACP-free intermediate towards its final metabolite. However, the timing of ACP off-loading is not well defined due to the lack of an apparent thioesterase (TE) among relevant biosynthetic enzymes. Here, ActIV, which had been assigned as a second ring cyclase (CYC) in actinorhodin (ACT) biosynthesis, was shown to possess a TE activity in vitro with a model substrate, anthraquinone-2-carboxylic acid-N-acetylcysteamine...
November 29, 2016: Chembiochem: a European Journal of Chemical Biology
https://www.readbyqxmd.com/read/27889155/genetic-basis-for-mycophenolic-acid-production-and-strain-dependent-production-variability-in-penicillium-roqueforti
#9
Guillaume Gillot, Jean-Luc Jany, Rebeca Dominguez-Santos, Elisabeth Poirier, Stella Debaets, Pedro I Hidalgo, Ricardo V Ullán, Emmanuel Coton, Monika Coton
Mycophenolic acid (MPA) is a secondary metabolite produced by various Penicillium species including Penicillium roqueforti. The MPA biosynthetic pathway was recently described in Penicillium brevicompactum. In this study, an in silico analysis of the P. roqueforti FM164 genome sequence localized a 23.5-kb putative MPA gene cluster. The cluster contains seven genes putatively coding seven proteins (MpaA, MpaB, MpaC, MpaDE, MpaF, MpaG, MpaH) and is highly similar (i.e. gene synteny, sequence homology) to the P...
April 2017: Food Microbiology
https://www.readbyqxmd.com/read/27886115/the-draft-genome-sequence-of-actinokineospora-bangkokensis-44ehw-t-reveals-the-biosynthetic-pathway-of-the-antifungal-thailandin-compounds-with-unusual-butylmalonyl-coa-extender-units
#10
Anja Greule, Bungonsiri Intra, Stephan Flemming, Marcel G E Rommel, Watanalai Panbangred, Andreas Bechthold
We report the draft genome sequence of Actinokineospora bangkokensis 44EHW(T), the producer of the antifungal polyene compounds, thailandins A and B. The sequence contains 7.45 Mb, 74.1% GC content and 35 putative gene clusters for the biosynthesis of secondary metabolites. There are three gene clusters encoding large polyketide synthases of type I. Annotation of the ORF functions and targeted gene disruption enabled us to identify the cluster for thailandin biosynthesis. We propose a plausible biosynthetic pathway for thailandin, where the unusual butylmalonyl-CoA extender unit is incorporated and results in an untypical side chain...
November 23, 2016: Molecules: a Journal of Synthetic Chemistry and Natural Product Chemistry
https://www.readbyqxmd.com/read/27886049/alkynyl-containing-peptides-of-marine-origin-a-review
#11
REVIEW
Qiu-Ye Chai, Zhen Yang, Hou-Wen Lin, Bing-Nan Han
Since the 1990s, a number of terminal alkynyl residue-containing cyclic/acyclic peptides have been identified from marine organisms, especially cyanobacteria and marine mollusks. This review has presented 66 peptides, which covers over 90% marine peptides with terminal alkynyl fatty acyl units. In fact, more than 90% of these peptides described in the literature are of cyanobacterial origin. Interestingly, all the linear peptides featured with terminal alkyne were solely discovered from marine cyanobacteria...
November 23, 2016: Marine Drugs
https://www.readbyqxmd.com/read/27880961/characterization-of-aspergillus-sojae-isolated-from-meju-korean-traditional-fermented-soybean-bricks
#12
Kyung Min Kim, Jaeho Lim, Jae Jung Lee, Byung-Serk Hurh, Inhyung Lee
Initially, we screened 18 A. sojae-like strains from Aspergillus spp. isolated from meju (Korean traditional fermented soybean bricks) according to their morphological characteristics. Because members of Aspergillus section Flavi are often incorrectly identified because of their phylogenetic similarity, we re-identified these strains at morphological and molecular genetic levels. Fourteen strains were finally identified as A. sojae. The isolates produced protease and α-amylase with ranges of 2.66-10.64 and 21...
November 23, 2016: Journal of Microbiology and Biotechnology
https://www.readbyqxmd.com/read/27879337/interactions-between-melanin-enzymes-and-their-atypical-recruitment-to-the-secretory-pathway-by-palmitoylation
#13
Srijana Upadhyay, Xinping Xu, Xiaorong Lin
: Melanins are biopolymers that confer coloration and protection to the host organism against biotic or abiotic insults. The level of protection offered by melanin depends on its biosynthesis and its subcellular localization. Previously, we discovered that Aspergillus fumigatus compartmentalizes melanization in endosomes by recruiting all melanin enzymes to the secretory pathway. Surprisingly, although two laccases involved in the late steps of melanization are conventional secretory proteins, the four enzymes involved in the early steps of melanization lack a signal peptide or a transmembrane domain and are thus considered "atypical" secretory proteins...
November 22, 2016: MBio
https://www.readbyqxmd.com/read/27878652/genome-wide-identification-and-phylogenetic-analysis-of-the-chalcone-synthase-gene-family-in-rice
#14
Lifang Hu, Haohua He, Changlan Zhu, Xiaosong Peng, Junru Fu, Xiaopeng He, Xiaorong Chen, Linjuan Ouyang, Jianmin Bian, Shiqiang Liu
The enzymes of the chalcone synthase family are also known as type III polyketide synthases (PKS), and produce a series of secondary metabolites in bacteria, fungi and plants. In a number of plants, genes encoding PKS comprise a large multigene family. Currently, detailed reports on rice (Oryza sativa) PKS (OsPKS) family genes and tissue expression profiling are limited. Here, 27 candidate OsPKS genes were identified in the rice genome,and 23 gene structures were confirmed by EST and cDNA sequencing; phylogenetic analysis has indicated that these 23 OsPKS members could be clustered into three groups (I-III)...
November 23, 2016: Journal of Plant Research
https://www.readbyqxmd.com/read/27876630/disruptions-of-the-genes-involved-in-lysine-biosynthesis-iron-acquisition-and-secondary-metabolisms-affect-virulence-and-fitness-in-metarhizium-robertsii
#15
Bruno Giuliano Garisto Donzelli, B Gillian Turgeon, Donna M Gibson, Stuart B Krasnoff
Based on genomic analysis, polyketide synthase (PKS) and nonribosomal peptide synthetase (NRPS) pathways account for biosynthesis of the majority of the secondary metabolites produced by the entomopathogenic fungus Metarhizium robertsii. To evaluate the contribution of these pathways to M. robertsii fitness and/or virulence, mutants deleted for mrpptA, the Sfp-type 4' phosphopantetheinyl transferase gene required for their activation were generated. ΔmrpptA strains were deficient in PKS and NRPS activity resulting in colonies lacking the typical green pigment that failed to produce the nonribosomal peptides destruxins, serinocylins, and the siderophores ferricrocin and metachelins, as well as the hybrid polyketide-peptides NG-39x that are all produced by the wild type (WT) M...
November 19, 2016: Fungal Genetics and Biology: FG & B
https://www.readbyqxmd.com/read/27875982/comparative-genomics-to-explore-phylogenetic-relationship-cryptic-sexual-potential-and-host-specificity-of-rhynchosporium-species-on-grasses
#16
Daniel Penselin, Martin Münsterkötter, Susanne Kirsten, Marius Felder, Stefan Taudien, Matthias Platzer, Kevin Ashelford, Konrad H Paskiewicz, Richard J Harrison, David J Hughes, Thomas Wolf, Ekaterina Shelest, Jenny Graap, Jan Hoffmann, Claudia Wenzel, Nadine Wöltje, Kevin M King, Bruce D L Fitt, Ulrich Güldener, Anna Avrova, Wolfgang Knogge
BACKGROUND: The Rhynchosporium species complex consists of hemibiotrophic fungal pathogens specialized to different sweet grass species including the cereal crops barley and rye. A sexual stage has not been described, but several lines of evidence suggest the occurrence of sexual reproduction. Therefore, a comparative genomics approach was carried out to disclose the evolutionary relationship of the species and to identify genes demonstrating the potential for a sexual cycle. Furthermore, due to the evolutionary very young age of the five species currently known, this genus appears to be well-suited to address the question at the molecular level of how pathogenic fungi adapt to their hosts...
November 22, 2016: BMC Genomics
https://www.readbyqxmd.com/read/27869143/genome-mining-unveils-widespread-natural-product-biosynthetic-capacity-in-human-oral-microbe-streptococcus-mutans
#17
Liwei Liu, Tingting Hao, Zhoujie Xie, Geoff P Horsman, Yihua Chen
Streptococcus mutans is a major pathogen causing human dental caries. As a Gram-positive bacterium with a small genome (about 2 Mb) it is considered a poor source of natural products. Due to a recent explosion in genomic data available for S. mutans strains, we were motivated to explore the natural product production potential of this organism. Bioinformatic characterization of 169 publically available genomes of S. mutans from human dental caries revealed a surprisingly rich source of natural product biosynthetic gene clusters...
November 21, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27866911/structural-insight-into-the-enzymatic-formation-of-bacterial-stilbene
#18
Takahiro Mori, Takayoshi Awakawa, Koichiro Shimomura, Yuri Saito, Dengfeng Yang, Hiroyuki Morita, Ikuro Abe
In contrast to stilbene biosynthesis by type III polyketide synthase in plants, in bacteria stilbene is produced by the collaboration of two enzymes in Photorhabdus luminescens: the unusual β-ketosynthase StlD catalyzes the condensation of the β-ketoacyl starter with an α,β-unsaturated-acyl substrate (two C-C bond-forming reactions) to produce isopropylstyrylcyclohexanedione, which is subsequently converted to stilbene by the aromatase StlC. Here we report the in vitro characterizations of StlD and StlC, and the X-ray crystal structures of StlD...
November 9, 2016: Cell Chemical Biology
https://www.readbyqxmd.com/read/27862822/type%C3%A2-iii-polyketide-synthases-functional-classification-and-phylogenomics
#19
REVIEW
Yugo Shimizu, Hiroyuki Ogata, Susumu Goto
Polyketide synthases (PKSs) catalyze the sequential condensation of simple acetate units to produce a large class of natural products, including pharmacologically valuable compounds. PKSs are classified into three types on the basis of their domain structures; type III PKSs have the simplest domain structure, although their products have various structures and functions. The sequence-function relationship is fundamental for predicting enzyme functions, but it has not been well investigated in type III PKSs to date...
November 14, 2016: Chembiochem: a European Journal of Chemical Biology
https://www.readbyqxmd.com/read/27856636/gibepyrone-biosynthesis-in-the-rice-pathogen-fusarium-fujikuroi-is-facilitated-by-a-small-polyketide-synthase-gene-cluster
#20
Slavica Janevska, Birgit Arndt, Eva-Maria Niehaus, Immo Burkhardt, Sarah M Rösler, Nelson L Brock, Hans-Ulrich Humpf, Jeroen S Dickschat, Bettina Tudzynski
The 2H-pyran-2-one gibepyrone A and its oxidized derivatives gibepyrones B-F have been isolated from the rice pathogenic fungus Fusarium fujikuroi already more than 20 years ago. However, these products have not been linked to the respective biosynthetic genes and therefore, their biosynthesis has not been analyzed on a molecular level so far. Feeding experiments with isotopically labeled precursors clearly supported a polyketide origin for the formal monoterpenoid gibepyrone A, while the terpenoid pathway could be excluded...
November 17, 2016: Journal of Biological Chemistry
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