keyword
https://read.qxmd.com/read/37514357/identification-of-genetic-loci-for-rice-seedling-mesocotyl-elongation-in-both-natural-and-artificial-segregating-populations
#1
JOURNAL ARTICLE
Fangjun Feng, Xiaosong Ma, Ming Yan, Hong Zhang, Daoliang Mei, Peiqing Fan, Xiaoyan Xu, Chunlong Wei, Qiaojun Lou, Tianfei Li, Hongyan Liu, Lijun Luo, Hanwei Mei
Mesocotyl elongation of rice seedlings is a key trait for deep sowing tolerance and well seedling establishment in dry direct sowing rice (DDSR) production. Subsets of the Rice Diversity Panel 1 (RDP1, 294 accessions) and Hanyou 73 (HY73) recombinant inbred line (RIL) population (312 lines) were screened for mesocotyl length (ML) via dark germination. Six RDP1 accessions (Phudugey, Kasalath, CA902B21, Surjamkuhi, Djimoron, and Goria) had an ML longer than 10 cm, with the other 19 accessions being over 4 cm...
July 24, 2023: Plants (Basel, Switzerland)
https://read.qxmd.com/read/35889976/interrelation-between-stress-management-and-secretion-systems-of-ralstonia-solanacearum-an-in-silico-assessment
#2
JOURNAL ARTICLE
Goutam Banerjee, Fu-Shi Quan, Amit Kumar Mondal, Shantanu Sur, Pratik Banerjee, Pritam Chattopadhyay
Ralstonia solanacearum (Rs), the causative agent of devastating wilt disease in several major and minor economic crops, is considered one of the most destructive bacterial plant pathogens. However, the mechanism(s) by which Rs counteracts host-associated environmental stress is still not clearly elucidated. To investigate possible stress management mechanisms, orthologs of stress-responsive genes in the Rs genome were searched using a reference set of known genes. The genome BLAST approach was used to find the distributions of these orthologs within different Rs strains...
June 27, 2022: Pathogens
https://read.qxmd.com/read/35769304/improving-nitrogen-use-efficiency-in-aerobic-rice-based-on-insights-into-the-ecophysiology-of-archaeal-and-bacterial-ammonia-oxidizers
#3
REVIEW
Muhammad Shahbaz Farooq, Muhammad Uzair, Zubaira Maqbool, Sajid Fiaz, Muhammad Yousuf, Seung Hwan Yang, Muhammad Ramzan Khan
The abundance and structural composition of nitrogen (N) transformation-related microbial communities under certain environmental conditions provide sufficient information about N cycle under different soil conditions. This study aims to explore the major challenge of low N use efficiency (NUE) and N dynamics in aerobic rice systems and reveal the agronomic-adjustive measures to increase NUE through insights into the ecophysiology of ammonia oxidizers. Water-saving practices, like alternate wetting and drying (AWD), dry direct seeded rice (DDSR), wet direct seeding, and saturated soil culture (SSC), have been evaluated in lowland rice; however, only few studies have been conducted on N dynamics in aerobic rice systems...
2022: Frontiers in Plant Science
https://read.qxmd.com/read/34971681/modeling-the-effects-of-elevation-and-precipitation-on-rice-oryza-sativa-l-production-considering-multiple-planting-methods-and-cultivars-in-central-china
#4
JOURNAL ARTICLE
Zeyu Zhou, Jiming Jin, Lingmeng Wang
In this study, we investigated the effects of elevation and precipitation on rice (Oryza sativa L.) production using the Crop Environment Resource Synthesis (CERES)-Rice model in Hubei province, China. We divided our study area into four zones based on elevation and precipitation. For each zone, our simulations were conducted using three planting methods: dry direct-seeded rice (DDSR), wet direct-seeded rice (WDSR), and transplanted-flooded rice (TFR), with three rice cultivars of different growth duration: Yangliangyou6 (long-duration), Huanghuazhan (mid-duration), and Lvhan1 (short-duration)...
March 20, 2022: Science of the Total Environment
https://read.qxmd.com/read/34543775/3d-dense-convolutional-neural-network-for-fast-and-accurate-single-mr-image-super-resolution
#5
JOURNAL ARTICLE
Lulu Wang, Jinglong Du, Ali Gholipour, Huazheng Zhu, Zhongshi He, Yuanyuan Jia
Super-resolution (SR) MR image reconstruction has shown to be a very promising direction to improve the spatial resolution of low-resolution (LR) MR images. In this paper, we presented a novel MR image SR method based on a dense convolutional neural network (DDSR), and its enhanced version called EDDSR. There are three major innovations: first, we re-designed dense modules to extract hierarchical features directly from LR images and propagate the extracted feature maps through dense connections. Therefore, unlike other CNN-based SR MR techniques that upsample LR patches in the initial phase, our methods take the original LR images or patches as input...
October 2021: Computerized Medical Imaging and Graphics: the Official Journal of the Computerized Medical Imaging Society
https://read.qxmd.com/read/32725933/more-and-more-of-less-and-less-is-genomics-based-breeding-of-dry-direct-seeded-rice-ddsr-varieties-the-need-of-hour
#6
REVIEW
Deepti B Sagare, Ragavendran Abbai, Abhinav Jain, Pranesh K Jayadevappa, Shilpi Dixit, Arun Kumar Singh, Venkateshwarlu Challa, Shamshad Alam, Uma Maheshwar Singh, Shailesh Yadav, Nitika Sandhu, Pramod G Kabade, Vikas Kumar Singh, Arvind Kumar
Rice is a staple food for half of the world's population. Changing climatic conditions, water and labour scarcity are the major challenges that shall limit future rice production. Dry direct-seeded rice (DDSR) is emerging as an efficient, resources conserving, mechanized, climate smart and economically viable strategy to be adopted as an alternative to puddled transplanted rice (TPR) with the potential to address the problem of labour-water shortages and ensure sustainable rice cultivation. Despite these benefits, several constraints obstruct the adoption of DDSR...
November 2020: Plant Biotechnology Journal
https://read.qxmd.com/read/32474107/mechanism-of-eukaryotic-serine-racemase-catalyzed-serine-dehydration
#7
JOURNAL ARTICLE
Tomokazu Ito, Mai Matsuoka, Masaru Goto, Soichiro Watanabe, Taichi Mizobuchi, Kazuma Matsushita, Ryoma Nasu, Hisashi Hemmi, Tohru Yoshimura
Eukaryotic serine racemase (SR) is a pyridoxal 5'-phosphate enzyme belonging to the Fold-type II group, which catalyzes serine racemization and is responsible for the synthesis of D-Ser, a co-agonist of the N-methyl-d-aspartate receptor. In addition to racemization, SR catalyzes the dehydration of D- and L-Ser to pyruvate and ammonia. The bifuctionality of SR is thought to be important for D-Ser homeostasis. SR catalyzes the racemization of D- and L-Ser with almost the same efficiency. In contrast, the rate of L-Ser dehydration catalyzed by SR is much higher than that of D-Ser dehydration...
September 2020: Biochimica et Biophysica Acta. Proteins and Proteomics
https://read.qxmd.com/read/31888269/improved-classification-method-based-on-the-diverse-density-and-sparse-representation-model-for-a-hyperspectral-image
#8
JOURNAL ARTICLE
Na Li, Ruihao Wang, Huijie Zhao, Mingcong Wang, Kewang Deng, Wei Wei
To solve the small sample size (SSS) problem in the classification of hyperspectral image, a novel classification method based on diverse density and sparse representation (NCM_DDSR) is proposed. In the proposed method, the dictionary atoms, which learned from the diverse density model, are used to solve the noise interference problems of spectral features, and an improved matching pursuit model is presented to obtain the sparse coefficients. Airborne hyperspectral data collected by the push-broom hyperspectral imager (PHI) and the airborne visible/infrared imaging spectrometer (AVIRIS) are applied to evaluate the performance of the proposed classification method...
December 16, 2019: Sensors
https://read.qxmd.com/read/31249338/deciphering-the-genetic-basis-of-root-morphology-nutrient-uptake-yield-and-yield-related-traits-in-rice-under-dry-direct-seeded-cultivation-systems
#9
JOURNAL ARTICLE
Nitika Sandhu, Sushil Raj Subedi, Vikas Kumar Singh, Pallavi Sinha, Santosh Kumar, S P Singh, Surya Kant Ghimire, Madhav Pandey, Ram Baran Yadaw, Rajeev K Varshney, Arvind Kumar
In the face of global water scarcity, a successful transition of rice cultivation from puddled to dry direct-seeded rice (DDSR) is a future need. A genome-wide association study was performed on a complex mapping population for 39 traits: 9 seedling-establishment traits, 14 root and nutrient-uptake traits, 5 plant morphological traits, 4 lodging resistance traits, and 7 yield and yield-contributing traits. A total of 10 significant marker-trait associations (MTAs) were found along with 25 QTLs associated with 25 traits...
June 27, 2019: Scientific Reports
https://read.qxmd.com/read/31182016/genome-wide-association-study-reveals-significant-genomic-regions-for-improving-yield-adaptability-of-rice-under-dry-direct-seeded-cultivation-condition
#10
JOURNAL ARTICLE
Sushil Raj Subedi, Nitika Sandhu, Vikas Kumar Singh, Pallavi Sinha, Santosh Kumar, S P Singh, Surya Kant Ghimire, Madhav Pandey, Ram Baran Yadaw, Rajeev K Varshney, Arvind Kumar
BACKGROUND: Puddled transplanted system of rice cultivation despite having several benefits, is a highly labor, water and energy intensive system. In the face of changing climatic conditions, a successful transition from puddled to dry direct seeded rice (DDSR) cultivation system looks must in future. Genome-wide association study was performed for traits including, roots and nutrient uptake (14 traits), plant-morphological (5 traits), lodging-resistance (4 traits) and yield and yield attributing traits (7 traits) with the aim to identify significant marker-trait associations (MTAs) for traits enhancing rice adaptability to dry direct-seeded rice (DDSR) system...
June 10, 2019: BMC Genomics
https://read.qxmd.com/read/24503688/direct-decompressive-surgery-followed-by-radiotherapy-versus-radiotherapy-alone-for-metastatic-epidural-spinal-cord-compression-a-meta-analysis
#11
COMPARATIVE STUDY
Chang-Hyun Lee, Ji-Woong Kwon, Jaebong Lee, Seung-Jae Hyun, Ki-Jeong Kim, Tae-Ahn Jahng, Hyun-Jib Kim
STUDY DESIGN: A systemic review and meta-analysis. OBJECTIVE: To compare the ambulatory status and survival for metastatic epidural spinal cord compression (MESCC) in patients treated with direct decompressive surgical resection (DDSR) followed by radiotherapy (RTx) with those in patients treated with RTx alone. SUMMARY OF BACKGROUND DATA: Surgical techniques have remarkably evolved from decompressive laminectomy without ventral tumor excision to DDSR, which has displayed favorable outcomes since the 2000s...
April 20, 2014: Spine
https://read.qxmd.com/read/20807245/investigation-of-small-scale-preferential-flow-with-a-forced-gradient-tracer-test
#12
JOURNAL ARTICLE
Marco Bianchi, Chunmiao Zheng, Geoffrey R Tick, Steven M Gorelick
A new tracer experiment (referred to as MADE-5) was conducted at the well-known Macrodispersion Experiment (MADE) site to investigate the influence of small-scale mass-transfer and dispersion processes on well-to-well transport. The test was performed under dipole forced-gradient flow conditions and concentrations were monitored in an extraction well and in two multilevel sampler (MLS) wells located at 6, 1.5, and 3.75 m from the source, respectively. The shape of the breakthrough curve (BTC) measured at the extraction well is strongly asymmetric showing a rapidly arriving peak and an extensive late-time tail...
July 2011: Ground Water
https://read.qxmd.com/read/15845599/comparison-of-tamoxifen-and-clomiphene-citrate-for-ovulation-induction-a-meta-analysis
#13
COMPARATIVE STUDY
Anne Z Steiner, Mishka Terplan, Richard J Paulson
BACKGROUND: Both selective estrogen receptor modulators, tamoxifen and clomiphene have been used for ovulation induction for patients with anovulatory infertility. This meta-analysis sought to compare the effectiveness of tamoxifen to clomiphene for the induction of ovulation and achievement of pregnancy. METHODS: We searched MEDLINE, BIOSIS, PreMEDLINE, CINAHL, International Pharmaceutical Abstracts, DDSR, ACP Journal Club, DARE and CCTR, along with reference lists and national experts...
June 2005: Human Reproduction
https://read.qxmd.com/read/15221595/dielectric-behaviour-of-graded-spherical-cells-with-an-intrinsic-dispersion
#14
JOURNAL ARTICLE
Y T C Ko, J P Huang, K W Yu
The dielectric properties of single-shell spherical cells with an intrinsic dielectric dispersion have been investigated. By means of the dielectric dispersion spectral representation (DDSR) for the Clausius-Mossotti (CM) factor, we express the dispersion strengths as well as the characteristic frequencies of the CM factor analytically in terms of the parameters of the cell model. These analytic expressions enable us to assess the influence of various model parameters on the electrokinetics of cells. Various interesting behaviours have been reported...
May 2004: European Physical Journal. E, Soft Matter
https://read.qxmd.com/read/12789145/magnetic-resonance-imaging-of-temporomandibular-joint-synovial-fluid-collection-and-disk-morphology
#15
JOURNAL ARTICLE
Jong-Ki Huh, Hyung-Gon Kim, Jee-Young Ko
OBJECTIVE: The purpose of this study was to determine the features of synovial fluid, the shape of the disk, and the presence of disk displacement without reduction (DDsR) of the temporomandibular joint. STUDY DESIGN: A total of 612 bilateral temporomandibular magnetic resonance images of 306 patients were reviewed. The status of the joint was categorized as follows: normal disk position, disk displacement with reduction, acute DDsR, subacute DDsR, and chronic DDsR...
June 2003: Oral Surgery, Oral Medicine, Oral Pathology, Oral Radiology, and Endodontics
https://read.qxmd.com/read/12200941/short-scan-spect-imaging-with-non-uniform-attenuation-and-3d-distance-dependent-spatial-resolution
#16
COMPARATIVE STUDY
Xiaochuan Pan, Emil Y Sidky, Chien-Min Kao, Yu Zou, Charles E Metz
Image quality and quantitative accuracy in single-photon emission computed tomography (SPECT) can be degraded by, e.g., the effects of photon attenuation and finite spatial resolution. It is generally considered that adequate compensation for such effects on SPECT images requires data acquired over 2 pi. Recently, using the existing consistency condition on the data function, Noo and Wagner (2001 Inverse Problems 17 1357-72) have shown analytically that data acquired over only pi can be used to correct completely for the effect of uniform attenuation in SPECT...
August 7, 2002: Physics in Medicine and Biology
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