keyword
https://read.qxmd.com/read/38652893/quantification-of-microrna-in-a-single-living-cell-via-ionic-current-rectification-based-nanopore-for-triple-negative-breast-cancer-diagnosis
#1
JOURNAL ARTICLE
Shujie Zhang, Laibo Song, Ruina Zheng, Fang Zhang, Qimeng Wang, Xiaosui Mao, Jin-Xuan Fan, Bo Liu, Yuan-Di Zhao, Wei Chen
Accurate analysis of microRNAs (miRNAs) at the single-cell level is extremely important for deeply understanding their multiple and intricate biological functions. Despite some advancements in analyzing single-cell miRNAs, challenges such as intracellular interferences and insufficient detection limits still remain. In this work, an ultrasensitive nanopore sensor for quantitative single-cell miRNA-155 detection is constructed based on ionic current rectification (ICR) coupled with enzyme-free catalytic hairpin assembly (CHA)...
April 23, 2024: Analytical Chemistry
https://read.qxmd.com/read/38652712/hgclamir-hypergraph-contrastive-learning-with-attention-mechanism-and-integrated-multi-view-representation-for-predicting-mirna-disease-associations
#2
JOURNAL ARTICLE
Dong Ouyang, Yong Liang, Jinfeng Wang, Le Li, Ning Ai, Junning Feng, Shanghui Lu, Shuilin Liao, Xiaoying Liu, Shengli Xie
Existing studies have shown that the abnormal expression of microRNAs (miRNAs) usually leads to the occurrence and development of human diseases. Identifying disease-related miRNAs contributes to studying the pathogenesis of diseases at the molecular level. As traditional biological experiments are time-consuming and expensive, computational methods have been used as an effective complement to infer the potential associations between miRNAs and diseases. However, most of the existing computational methods still face three main challenges: (i) learning of high-order relations; (ii) insufficient representation learning ability; (iii) importance learning and integration of multi-view embedding representation...
April 2024: PLoS Computational Biology
https://read.qxmd.com/read/38652556/macrophage-derived-exosomal-mirna-141-triggers-endothelial-cell-pyroptosis-by-targeting-nlrp3-to-accelerate-sepsis-progression
#3
JOURNAL ARTICLE
Feng Zhan, Jun Zhang, Ping He, Wenteng Chen, Yanhong Ouyang
Sepsis, critical condition marked by severe organ dysfunction from uncontrolled infection, involves the endothelium significantly. Macrophages, through paracrine actions, play a vital role in sepsis, but their mechanisms in sepsis pathogenesis remain elusive. Objective: We aimed to explore how macrophage-derived exosomes with low miR-141 expression promote pyroptosis in endothelial cells (ECs). Exosomes from THP-1 cell supernatant were isolated and characterized. The effects of miR-141 mimic/inhibitor on apoptosis, proliferation, and invasion of Human Umbilical Vein Endothelial Cells (HUVECs) were assessed using flow cytometry, CCK-8, and transwell assays...
2024: International Journal of Immunopathology and Pharmacology
https://read.qxmd.com/read/38652440/crispr-cas13a-triggered-dnazyme-signal-amplification-based-colorimetric-mirna-detection-method-and-its-application-in-evaluating-the-anxiety
#4
JOURNAL ARTICLE
Na Yan, Zhiwei Hu, Lingling Zhang
The development of a bio-sensing strategy based on CRISPR/Cas that is exceptionally sensitive is crucial for the identification of trace molecules. Colorimetric miRNA detection utilizing CRISPR/Cas13a-triggered DNAzyme signal amplification was described in this article. The developed strategy was implemented for miRNA-21 detection as a proof of concept. The cleavage activity of Cas13a was triggered when the target molecule bonded to the Cas13a-crRNA complex and cleaved uracil ribonucleotides (rU) in the substrate probe...
April 23, 2024: Applied Biochemistry and Biotechnology
https://read.qxmd.com/read/38652370/expression-patterns-of-mirnas-in-egyptian-children-with-adhd-clinical-study-with-correlation-analysis
#5
JOURNAL ARTICLE
Hala M Zeidan, Neveen Hassan Nashaat, Maha Hemimi, Adel F Hashish, Amal Elsaeid, Nagwa Abd El-Ghaffar, Suzette I Helal, Nagwa A Meguid
ADHD has huge knowledge gaps concerning its etiology. MicroRNAs (miRNAs) provide promising diagnostic biomarkers of human pathophysiology and may be a novel therapeutic option. The aim was to investigate the levels of miR-34c-3p, miR-155, miR-138-1, miR-296-5p, and plasma brain-derived neurotrophic factor (BDNF) in a group of children with ADHD compared to neurotypicals and to explore correlations between these measures and some clinical data. The participants were children with ADHD in Group I (N = 41; age: 8...
April 23, 2024: Journal of Molecular Neuroscience: MN
https://read.qxmd.com/read/38652214/extracellular-vesicles-derived-from-bone-marrow-mesenchymal-stem-cells-ameliorate-chronic-liver-damage-via-microrna-136-5p
#6
JOURNAL ARTICLE
Xiaodan Jiang, Zhejun Liu, Hongjie You, Zuoqing Tang, Yun Ma, Ruifang Nie, Zheng Yang, Niancong Che, Wenlan Liu
Chronic liver damage (CLD) encompasses a spectrum of conditions and poses a significant global health challenge, affecting millions of individuals. Currently, there is a deficiency of clinically validated therapeutics with minimal side effects. Emerging evidence underscores the significant potential of extracellular vesicles derived from bone marrow mesenchymal stem cells (BMSC-EVs) as a promising therapeutic method for CLD. This study aimed to evaluate the influence of BMSC-EVs containing microRNA-136-5p (BMSC-EVs-miR-136-5p) on macrophage polarization during chronic liver injury and elucidate the mechanisms associated with the GNAS/PI3K/ERK/STAT3 axis...
April 23, 2024: Molecular and Cellular Biochemistry
https://read.qxmd.com/read/38651188/potential-utility-of-pretreatment-serum-mirnas-for-optimal-treatment-selection-in-advanced-high-grade-serous-ovarian-cancer
#7
JOURNAL ARTICLE
Takashi Uehara, Juntaro Matsuzaki, Hiroshi Yoshida, Yuto Ogawa, Junichiro Miura, Hitoshi Fujimiya, Yusuke Yamamoto, Junpei Kawauchi, Satoko Takizawa, Kan Yonemori, Hiromi Sakamoto, Ken Kato, Mitsuya Ishikawa, Takahiro Ochiya
OBJECTIVE: The primary treatment of patients with advanced ovarian cancer is selected from whether primary debulking surgery or neoadjuvant chemotherapy. We investigated whether pretreatment serum microRNA profiles are useful for selecting patients with advanced high-grade serous ovarian cancer who obtain better outcomes from undergoing primary debulking surgery or neoadjuvant chemotherapy. METHODS: Consecutive patients with clinical stage IIIB-IVB and serum microRNA data were selected...
April 22, 2024: Japanese Journal of Clinical Oncology
https://read.qxmd.com/read/38650823/insights-into-colorectal-carcinoma-a-comprehensive-review-of-microrna-expression-patterns
#8
REVIEW
Shweta Pandey, Akriti Jain, Sunita Vagha
Colorectal carcinoma (CRC) remains a significant contributor to cancer-related morbidity and mortality worldwide. MicroRNAs (miRNAs) have emerged as crucial regulators of gene expression and play critical roles in various biological processes, including carcinogenesis. This comprehensive review aims to elucidate the role of miRNAs in CRC by analyzing their expression patterns and functional implications. An extensive literature review identified dysregulated miRNAs associated with different stages of CRC progression, from initiation to metastasis...
March 2024: Curēus
https://read.qxmd.com/read/38650448/advance-in-applications-of-artificial-intelligence-algorithms-in-cancer-related-mirna-research
#9
JOURNAL ARTICLE
Hongyu Lu, Jia Zhang, Yixin Cao, Shuming Wu, Xingyan Wang, Yurong Bai, Chang Zhao, Jun Zhu, Yuan Wei, Runting Yin
MiRNAs are a class of small non-coding RNAs, which regulate gene expression post-transcriptionally by partial complementary base pairing. Aberrant miRNA expressions have been reported in tumor tissues and peripheral blood of cancer patients. Bioinformatic tools could improve efficiency of miRNA research, while current bioinformatic tools are in lack of sufficient accuracy. In recent years, artificial intelligence algorithms such as machine learning and deep learning have been widely used in the bioinformatical tools...
April 16, 2024: Zhejiang da Xue Xue Bao. Yi Xue Ban, Journal of Zhejiang University. Medical Sciences
https://read.qxmd.com/read/38650154/microrna-503-5p-protects-streptozotocin-induced-erectile-dysfunction-in-diabetic-rats-by-downregulating-syde2
#10
JOURNAL ARTICLE
Gangqin Li, Lin Jiang, Kuan Bai, Guangxing Tan
Plentiful studies have clarified miRNAs take on a key role in the sexual dysfunction of diabetic rats. This study aimed to figure out microRNA (miR)-503-5p/SYDE2 axis' latent mechanisms in streptozotocin-induced diabetic rat sexual dysfunction. A model of erectile dysfunction (ED) in diabetic rats was established by injecting streptozotocin. MiR-503-5p and SYDE2 in ED rats were altered by injection of miR-503-5p mimic or si/oe-SYDE2. The targeting link between miR-503-5p and SYDE2 was testified. ICP/MAP value was tested by pressure sensor; Penile capillary abundance was assessed; Penile cGMP and AGEs were detected; penile smooth muscle cell apoptosis was assessed; MiR-503-5p and SYDE2 were tested...
March 31, 2024: Cellular and Molecular Biology
https://read.qxmd.com/read/38650129/mir-4454-in-combined-allergic-rhinitis-and-asthma-syndrome-caras-clinical-significance-and-mechanistic-insights-into-airway-inflammation
#11
JOURNAL ARTICLE
Zhiguang Liu, Chuang Sun, Yujia Shi, Zhipeng Wang, Lianzheng Zhou, Qian Zhang, Zhengdao Mao
Abnormal expression of non-coding microRNA is associated with the development of combined allergic rhinitis and asthma syndrome (CARAS). However, the function of miR-4454 in CARAS is unknown. Our study aimed to reveal the clinical significance and related mechanism of miR-4454 in CARAS. Blood samples from 38 cases of CARAS and 43 cases of healthy subjects were collected to detect the expression of miR-4454. House dust mite (HDM) sensitization and challenge-induced bronchial epithelial cells to simulate the asthma state model in vitro, miR-4454 mimics and inhibitor transfection to detect the expression level of pro-inflammatory cytokines, cell survival rate and migration ability, flow cytometry and western blot (WB) Detection of cell cycle, apoptosis and inflammation-related protein levels...
March 31, 2024: Cellular and Molecular Biology
https://read.qxmd.com/read/38650126/mir-34a-ameliorates-arterial-blood-flow-in-rats-with-lower-limb-arteriosclerosis-obliterans-via-sirt1-signaling-pathway
#12
JOURNAL ARTICLE
Tuo Xu, Changwei Zheng, Yongkang Wu, Zhengde Chen, Huilai Miao
In this study, we investigated the impact of microRNA-34a (miR-34a) on lower limb arteriosclerosis obliterans in rats through the Sirtuin 1 (Sirt1) signaling pathway. Thirty-six Sprague-Dawley rats were divided into normal, model, and miR-34a mimics groups. Rats in the normal group were raised normally, while the model group underwent lower limb arteriosclerosis obliterans induction and received saline injections. The miR-34a mimics group also underwent arteriosclerosis obliterans modeling but received miR-34a mimics injections...
March 31, 2024: Cellular and Molecular Biology
https://read.qxmd.com/read/38650118/exercise-training-attenuates-the-muscle-mitochondria-genomic-response-to-bed-rest
#13
JOURNAL ARTICLE
Joshua A Cotter, Abel Plaza-Florido, Gregory R Adams, Fadia Haddad, Jessica M Scott, Meghan Everett, Lori Ploutz-Snyder, Shlomit Radom-Aizik
PURPOSE: Exercise training during the National Aeronautics and Space Administration (NASA) 70-day bed rest study effectively counteracted the decline in aerobic capacity, muscle mass, strength, and endurance. We aimed to characterize the genomic response of the participants' vastus lateralis (VL) on day 64 of bed rest with and without exercise countermeasures. METHODS: Twenty-two healthy young males were randomized into three groups: 1) bed rest only (n = 7), 2) bed rest + aerobic (6 d/wk) and resistance training (3 d/wk) on standard equipment (n = 7), and 3) bed rest + aerobic and resistance training using a flywheel device (n = 8)...
April 23, 2024: Medicine and Science in Sports and Exercise
https://read.qxmd.com/read/38650072/logic-signal-amplification-system-for-sensitive-electrochemiluminescence-detection-and-subtype-identification-of-cancer-cells
#14
JOURNAL ARTICLE
Yi-Lei Jia, Xiao-Qiong Li, Zhong-Xia Wang, Hang Gao, Hong-Yuan Chen, Jing-Juan Xu
Achieving sensitive detection and accurate identification of cancer cells is vital for diagnosing and treating the disease. Here, we developed a logic signal amplification system using DNA tetrahedron-mediated three-dimensional (3D) DNA nanonetworks for sensitive electrochemiluminescence (ECL) detection and subtype identification of cancer cells. Specially designed hairpins were integrated into DNA tetrahedral nanostructures (DTNs) to perform a catalytic hairpin assembly (CHA) reaction in the presence of target microRNA, forming hyperbranched 3D nanonetworks...
April 22, 2024: Analytical Chemistry
https://read.qxmd.com/read/38649939/contrast-induced-acute-kidney-injury-a-review-of-definition-pathogenesis-risk-factors-prevention-and-treatment
#15
REVIEW
Yanyan Li, Junda Wang
Contrast-induced acute kidney injury (CI-AKI) has become the third leading cause of hospital-acquired AKI, which seriously threatens the health of patients. To date, the precise pathogenesis of CI-AKI has remained not clear and may be related to the direct cytotoxicity, hypoxia and ischemia of medulla, and oxidative stress caused by iodine contrast medium, which have diverse physicochemical properties, including cytotoxicity, permeability and viscosity. The latest research shows that microRNAs (miRNAs) are also involved in apoptosis, pyroptosis, and autophagy which caused by iodine contrast medium (ICM), which may be implicated in the pathogenesis of CI-AKI...
April 22, 2024: BMC Nephrology
https://read.qxmd.com/read/38649419/mir-451a-was-selectively-sorted-into-exosomes-and-promoted-the-progression-of-esophageal-squamous-cell-carcinoma-through-cab39
#16
JOURNAL ARTICLE
Lu Wang, Huijuan Liu, Qinglu Wu, Yiqian Liu, Zhenpeng Yan, Guohui Chen, Yao Shang, Songrui Xu, Qichao Zhou, Ting Yan, Xiaolong Cheng
Exosomes are emerging mediators of cell-cell communication, which are secreted from cells and may be delivered into recipient cells in cell biological processes. Here, we examined microRNA (miRNA) expression in esophageal squamous cell carcinoma (ESCC) cells. We performed miRNA sequencing in exosomes and cells of KYSE150 and KYSE450 cell lines. Among these differentially expressed miRNAs, 20 of the miRNAs were detected in cells and exosomes. A heat map indicated that the level of miR-451a was higher in exosomes than in ESCC cells...
April 22, 2024: Cancer Gene Therapy
https://read.qxmd.com/read/38649381/tspan-protein-family-focusing-on-the-occurrence-progression-and-treatment-of-cancer
#17
REVIEW
Huhu Zhang, Qinghang Song, Kaiwen Shang, Ya Li, Liangqian Jiang, Lina Yang
The Tetraspanins (Tspan) protein family, also known as the tetraspanin family, contains 33 family members that interact with other protein molecules such as integrins, adhesion molecules, and T cell receptors by forming dimers or heterodimers. The Tspan protein family regulates cell proliferation, cell cycle, invasion, migration, apoptosis, autophagy, tissue differentiation, and immune response. More and more studies have shown that Tspan proteins are involved in tumorigenesis, epithelial-mesenchymal transition, thrombosis, tumor stem cell, and exosome signaling...
April 22, 2024: Cell Death Discovery
https://read.qxmd.com/read/38649132/inhibition-of-mir-146b-5p-alleviates-isoprenaline-induced-cardiac-hypertrophy-via-regulating-dfcp1
#18
JOURNAL ARTICLE
Siling Liu, Linjie Su, Jie Li, Yuexin Zhang, Xiaopei Hu, Pengcheng Wang, Peiqing Liu, Jiantao Ye
Pathological cardiac hypertrophy often precedes heart failure due to various stimuli, yet effective clinical interventions remain limited. Recently, microRNAs (miRNAs) have been identified as critical regulators of cardiovascular development. In this study, we investigated the role of miR-146b-5p and its underlying mechanisms of action in cardiac hypertrophy. Isoprenaline (ISO) treatment induced significant hypertrophy and markedly enhanced the expression of miR-146b-5p in cultured neonatal rat cardiomyocytes and hearts of C57BL/6 mice...
April 20, 2024: Molecular and Cellular Endocrinology
https://read.qxmd.com/read/38648205/bioinformatics-and-system-biology-approaches-to-determine-the-connection-of-sars-cov-2-infection-and-intrahepatic-cholangiocarcinoma
#19
JOURNAL ARTICLE
Xinyi Zhou, Tengda Huang, Hongyuan Pan, Ao Du, Tian Wu, Jiang Lan, Yujia Song, Yue Lv, Fang He, Kefei Yuan
INTRODUCTION: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the causal agent of coronavirus disease 2019 (COVID-19), has infected millions of individuals worldwide, which poses a severe threat to human health. COVID-19 is a systemic ailment affecting various tissues and organs, including the lungs and liver. Intrahepatic cholangiocarcinoma (ICC) is one of the most common liver cancer, and cancer patients are particularly at high risk of SARS-CoV-2 infection. Nonetheless, few studies have investigated the impact of COVID-19 on ICC patients...
2024: PloS One
https://read.qxmd.com/read/38648015/sequence-and-structure-dependent-cytotoxicity-of-phosphorothioate-and-2-o-methyl-modified-single-stranded-oligonucleotides
#20
JOURNAL ARTICLE
Laura V Croft, Mark Fisher, Tabassum Khair Barbhuiya, Serene El-Kamand, Samuel Beard, Aleksandra Rajapakse, Roland Gamsjaeger, Liza Cubeddu, Emma Bolderson, Ken O'Byrne, Derek Richard, Neha S Gandhi
Single-stranded oligonucleotides (SSOs) are a rapidly expanding class of therapeutics that comprises antisense oligonucleotides, microRNAs, and aptamers, with ten clinically approved molecules. Chemical modifications such as the phosphorothioate backbone and the 2'- O -methyl ribose can improve the stability and pharmacokinetic properties of therapeutic SSOs, but they can also lead to toxicity in vitro and in vivo through nonspecific interactions with cellular proteins, gene expression changes, disturbed RNA processing, and changes in nuclear structures and protein distribution...
April 22, 2024: Nucleic Acid Therapeutics
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