keyword
https://read.qxmd.com/read/38478490/low-cost-versatile-and-highly-reproducible-microfabrication-pipeline-to-generate-3d-printed-customised-cell-culture-devices-with-complex-designs
#21
JOURNAL ARTICLE
Cathleen Hagemann, Matthew C D Bailey, Eugenia Carraro, Ksenia S Stankevich, Valentina Maria Lionello, Noreen Khokhar, Pacharaporn Suklai, Carmen Moreno-Gonzalez, Kelly O'Toole, George Konstantinou, Christina L Dix, Sudeep Joshi, Eleonora Giagnorio, Mads S Bergholt, Christopher D Spicer, Albane Imbert, Francesco Saverio Tedesco, Andrea Serio
Cell culture devices, such as microwells and microfluidic chips, are designed to increase the complexity of cell-based models while retaining control over culture conditions and have become indispensable platforms for biological systems modelling. From microtopography, microwells, plating devices, and microfluidic systems to larger constructs such as live imaging chamber slides, a wide variety of culture devices with different geometries have become indispensable in biology laboratories. However, while their application in biological projects is increasing exponentially, due to a combination of the techniques, equipment and tools required for their manufacture, and the expertise necessary, biological and biomedical labs tend more often to rely on already made devices...
March 2024: PLoS Biology
https://read.qxmd.com/read/38477213/analysing-and-quantifying-chronic-stress-associated-endogenous-steroids-in-hair-samples
#22
JOURNAL ARTICLE
Katharina Elisabeth Grafinger, Wassilis Kassis, Céline A Favre, Dilan Aksoy, Stefan Gaugler
In previous studies, various steroids have been associated with stress and have therefore been quantified to investigate stress-related questions. Since the main stress-related steroid cortisol follows a circadian rhythm, often hair is analysed to quantify this steroid. Further, hair analysis gives the unique possibility of long-time monitoring by analysing a certain segment of hair, since hair grows on average 1 cm per month. Hair is a difficult matrix due to the complex sample preparation with many steps including washing and grinding, followed by various extraction steps...
March 13, 2024: Drug Testing and Analysis
https://read.qxmd.com/read/38474105/rapid-and-convenient-single-chain-variable-fragment-employed-electrochemical-c-reactive-protein-detection-system
#23
JOURNAL ARTICLE
Daimei Miura, Saki Motohashi, Ayaka Goto, Hayato Kimura, Wakako Tsugawa, Koji Sode, Kazunori Ikebukuro, Ryutaro Asano
Although IgG-free immunosensors are in high demand owing to ethical concerns, the development of convenient immunosensors that alternatively integrate recombinantly produced antibody fragments, such as single-chain variable fragments (scFvs), remains challenging. The low affinity of antibody fragments, unlike IgG, caused by monovalent binding to targets often leads to decreased sensitivity. We improved the affinity owing to the bivalent effect by fabricating a bivalent antibody-enzyme complex (AEC) composed of two scFvs and a single glucose dehydrogenase, and developed a rapid and convenient scFv-employed electrochemical detection system for the C-reactive protein (CRP), which is a homopentameric protein biomarker of systemic inflammation...
March 1, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38465250/halo-rpd-searching-for-rna-binding-protein-targets-in-plants
#24
JOURNAL ARTICLE
A O Shamustakimova
Study of RNA-protein interactions and identification of RNA targets are among the key aspects of understanding RNA biology. Currently, various methods are available to investigate these interactions with, RNA immunoprecipitation (RIP) being the most common. The search for RNA targets has largely been conducted using antibodies to an endogenous protein or to GFP-tag directly. Having to be dependent on the expression level of the target protein and having to spend time selecting highly specific antibodies make immunoprecipitation complicated...
February 2024: Vavilovskii Zhurnal Genetiki i Selektsii
https://read.qxmd.com/read/38464973/the-t2t-chm13-reference-assembly-uncovers-essential-wash1-and-gprin2-paralogues
#25
JOURNAL ARTICLE
Daniel Cerdán-Vélez, Michael Liam Tress
SUMMARY: The recently published T2T-CHM13 reference assembly completed the annotation of the final 8% of the human genome. It introduced 1956 genes, close to 100 of which are predicted to be coding because they have a protein coding parent gene. Here, we confirm the coding status and functional relevance of two of these genes, paralogues of WASHC1 and GPRIN2 . We find that LOC124908094 , one of four novel subtelomeric WASH1 genes uncovered in the new assembly, produces the WASH1 protein that forms part of the vital actin-regulatory WASH complex...
2024: Bioinform Adv
https://read.qxmd.com/read/38448146/a-review-of-health-education-activities-targeting-schoolchildren-for-the-control-of-soil-transmitted-helminthiasis-in-southeast-asia-with-emphasis-upon-the-magic-glasses-approach
#26
JOURNAL ARTICLE
Mary Lorraine S Mationg, Gail M Williams, Veronica L Tallo, Remigio M Olveda, Donald P McManus, Donald E Stewart, Darren J Gray
Soil-transmitted helminths continue to be a serious problem causing disease and morbidity globally. Children, mostly school-aged, are more at risk of these infections. The main strategy for control remains to be the mass drug administration (MDA) of antihelminthic drugs. With the limitation of MDA to prevent re-infection, the need for additional approaches such as hygiene education and improvements in water, sanitation and hygiene (WASH) infrastructure are required. Although the importance of health education as a crucial component of an integrated approaches to STH control is highlighted, this component has often been disregarded because the other more complex solutions have been the focus of most studies and programmes...
2024: Advances in Parasitology
https://read.qxmd.com/read/38427023/minimalist-tetrazine-n-acetyl-muramic-acid-probes-for-rapid-and-efficient-labeling-of-commensal-and-pathogenic-peptidoglycans-in-living-bacterial-culture-and-during-macrophage-invasion
#27
JOURNAL ARTICLE
Ashlyn S Hillman, Stephen N Hyland, Kimberly A Wodzanowski, DeVonte L Moore, Sushanta Ratna, Andrew Jemas, Liam-Michael D Sandles, Timothy Chaya, Arit Ghosh, Joseph M Fox, Catherine L Grimes
N -Acetyl muramic acid (NAM) probes containing alkyne or azide groups are commonly used to investigate aspects of cell wall synthesis because of their small size and ability to incorporate into bacterial peptidoglycan (PG). However, copper-catalyzed alkyne-azide cycloaddition (CuAAC) reactions are not compatible with live cells, and strain-promoted alkyne-azide cycloaddition (SPAAC) reaction rates are modest and, therefore, not as desirable for tracking the temporal alterations of bacterial cell growth, remodeling, and division...
March 1, 2024: Journal of the American Chemical Society
https://read.qxmd.com/read/38407347/symmetry-breaking-malachite-green-as-a-near-infrared-light-activated-fluorogenic-photosensitizer-for-rna-proximity-labeling
#28
JOURNAL ARTICLE
Lan Li, Jinghua Han, Hei-Yong G Lo, Winnie Wai Ling Tam, Han Jia, Edmund Chun Ming Tse, J Matthew Taliaferro, Ying Li
Cellular RNA is asymmetrically distributed in cells and the regulation of RNA localization is crucial for proper cellular functions. However, limited chemical tools are available to capture dynamic RNA localization in complex biological systems with high spatiotemporal resolution. Here, we developed a new method for RNA proximity labeling activated by near-infrared (NIR) light, which holds the potential for deep penetration. Our method, termed FAP-seq, utilizes a genetically encoded fluorogen activating protein (FAP) that selectively binds to a set of substrates known as malachite green (MG)...
February 26, 2024: Nucleic Acids Research
https://read.qxmd.com/read/38396383/maintaining-vulvar-vaginal-and-perineal-health-clinical-considerations
#29
REVIEW
Alessandra Graziottin
Knowledge of female genital anatomy and physiology is often inadequate or incorrect among women. Precise patient-physician conversations can be inhibited by a reluctance or inability to speak accurately about the vulva and vagina, with the terms often being used interchangeably. There is a paucity of scientific evidence and clinical guidelines to support women and physicians in ensuring best practices in feminine hygiene. In this review, the unmet needs in the field are highlighted. Evidence is provided for the complex array of physiological and pathological systems, mechanisms and behaviours that either protect or, if inappropriate, predispose the vulva and vagina to infections, irritation or other conditions...
2024: Women's Health
https://read.qxmd.com/read/38393185/microbial-composition-of-water-kefir-grains-and-their-application-for-the-detoxification-of-aflatoxin-b1
#30
JOURNAL ARTICLE
Weidong Ouyang, Zhenlin Liao, Ximiao Yang, Xiao Zhang, Xiaoxuan Zhu, Qingping Zhong, Li Wang, Xiang Fang, Jie Wang
Water kefir grains (WKGs), the starter used to develop a traditional beverage named water kefir, consist of a symbiotic mixture of probiotics with diverse bioactivities, but little is known about their abilities to remove mycotoxins that have serious adverse effects on humans and animals. This study investigated the ability of WKGs to remove aflatoxin B1 (AFB1), one of the most toxic mycotoxins, under different settings, and determined the mechanism of absorption mediated by WKGs and the effect of WKGs on the toxicity induced by AFB1 and the reduction in AFB1 in cow milk and tea soups...
February 15, 2024: Toxins
https://read.qxmd.com/read/38381002/microfiber-pollution-a-systematic-literature-review-to-overcome-the-complexities-in-knit-design-to-create-solutions-for-knit-fabrics
#31
REVIEW
Elisabeth Allen, Claudia E Henninger, Arthur Garforth, Edidiong Asuquo
The absence of standardized procedures to assess microfiber pollution released during laundering, alongside textile complexities, has caused incomparability and inconsistency between published methodologies, data formats, and presentation of findings. Yet, this information needs to be clear and succinct to engage producers and consumers in reducing microfiber pollution through solutions, such as eco-design. This review analyses source directed interventions through design and manufacturing parameters that can prevent or reduce microfiber shedding from knit fabrics during washing...
February 21, 2024: Environmental Science & Technology
https://read.qxmd.com/read/38372599/-bond-strength-of-metal-brackets-to-enamel-with-a-russian-adhesive-complex-an-in-vitro-study
#32
JOURNAL ARTICLE
N S Tuturov, A M Khasan, F S Rusanov, I Katbeh, D S Bulycheva, A Saleh
BACKGROUND: The era of using adhesives to fix brackets began in the 70s of the last century. There are eight generations of foreign-made adhesive systems for the restoration of teeth. However, until now, in orthodontics, the development of domestic adhesive systems with improved properties of adhesion of brackets to tooth enamel still important, especially in the posterior teeth. OBJECTIVE: The purpose of this work was to study the shear strength of fifth generation domestic adhesive between metal brackets and the enamel of molar teeth in laboratory conditions...
2024: Stomatologii︠a︡
https://read.qxmd.com/read/38368930/vps35-and-retromer-dysfunction-in-parkinson-s-disease
#33
REVIEW
Jordan Rowlands, Darren J Moore
The vacuolar protein sorting 35 ortholog ( VPS35 ) gene encodes a core component of the retromer complex essential for the endosomal sorting and recycling of transmembrane cargo. Endo-lysosomal pathway deficits are suggested to play a role in the pathogenesis of neurodegenerative diseases, including Parkinson's disease (PD). Mutations in VPS35 cause a late-onset, autosomal dominant form of PD, with a single missense mutation (D620N) shown to segregate with disease in PD families. Understanding how the PD-linked D620N mutation causes retromer dysfunction will provide valuable insight into the pathophysiology of PD and may advance the identification of therapeutics...
April 8, 2024: Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences
https://read.qxmd.com/read/38354930/robust-and-flexible-polyester-fiber-membrane-with-under-liquid-dual-superlyophobicity-for-efficient-on-demand-oil-water-separation
#34
JOURNAL ARTICLE
Yulei Li, Mengke Jia, Baoying Shi, Songlin Wang, Xiayu Luan, Zhanhua Hao, Yufeng Wang
Functional materials with under-liquid dual superlyophobicity have generated a great deal of concern from researchers due to their switchable separation ability oil-water mixtures and emulsions. Conceptually, under-liquid dual superlyophobicity is a Cassie state achievable under-liquid through the synergy of an under-liquid double lyophobic surface and the construction of a highly rough surface. However, obtaining an under-liquid dual superlyophobic surface remains difficult due to its thermodynamic contradiction and complex surface composition...
February 12, 2024: International Journal of Biological Macromolecules
https://read.qxmd.com/read/38352104/pericardial-tuberculosis-in-a-non-endemic-region-presenting-as-a-persistent-upper-respiratory-tract-infection-with-negative-serology-bronchial-washings-and-pleural-aspirate
#35
Philip Nolan, Sanya Samad, Thomas Kiernan
This paper reports on the unlikely case of a 68-year-old man presenting with a non-resolving, mild lower respiratory tract infection, subsequently diagnosed with pericardial tuberculosis (TB) in the absence of TB risk factors and with negative TB serology. Pericardial and pleural effusions were found incidentally on CT pulmonary angiogram, with a small pericardial effusion without tamponade seen on the echocardiogram. During his three-month inpatient stay, the patient was rarely very unwell, though no treatment led to clinical and biochemical resolution of symptoms...
January 2024: Curēus
https://read.qxmd.com/read/38351924/a-case-of-hot-tub-lung-secondary-to-mycobacterium-avium-complex-in-victoria-australia
#36
Louis Chhor, Reditta Soraya Tumali, Caroline Östberg, Anish Sachdev
Hot tub lung (HTL) is a type of Hypersensitivity Pneumonitis (HP) caused by inhalation of aerosols containing non-tuberculous mycobacteria (NTM). We report the first case of hot tub lung in Victoria, Australia. A 31-year-old female presented with 3 weeks of dyspnoea, fevers and malaise, despite a course of antibiotics. She had used an indoor spa frequently for the past several months. She was hypoxic saturating 86% on room air. Examination revealed fine bilateral basal crepitations without wheeze. Inflammatory markers were elevated...
February 2024: Respirology Case Reports
https://read.qxmd.com/read/38344222/single-molecule-fluorescence-multiplexing-by-multi-parameter-spectroscopic-detection-of-nanostructured-fret-labels
#37
Jiachong Chu, Ayesha Ejaz, Kyle M Lin, Madeline R Joseph, Aria E Coraor, D Allan Drummond, Allison H Squires
Multiplexed, real-time fluorescence detection at the single-molecule level is highly desirable to reveal the stoichiometry, dynamics, and interactions of individual molecular species within complex systems. However, traditionally fluorescence sensing is limited to 3-4 concurrently detected labels, due to low signal-to-noise, high spectral overlap between labels, and the need to avoid dissimilar dye chemistries. We have engineered a palette of several dozen fluorescent labels, called FRETfluors, for spectroscopic multiplexing at the single-molecule level...
January 25, 2024: ArXiv
https://read.qxmd.com/read/38342546/biomimetic-leaves-with-immobilized-catalase-for-machine-learning-enabled-validating-fresh-produce-sanitation-processes
#38
JOURNAL ARTICLE
Minyue Guo, Shijie Tian, Wen Wang, Lijuan Xie, Huirong Xu, Kang Huang
Washing and sanitation are vital steps during the postharvest processing of fresh produce to reduce the microbial load on the produce surface. Although current process control and validation tools effectively predict sanitizer concentrations in wash water, they have significant limitations in assessing sanitizer effectiveness for reducing microbial counts on produce surfaces. These challenges highlight the urgent need to improve the validation of sanitation processes, especially considering the presence of dynamic organic contaminants and complex surface topographies...
March 2024: Food Research International
https://read.qxmd.com/read/38335055/compositional-deep-probabilistic-models-of-dna-encoded-libraries
#39
JOURNAL ARTICLE
Benson Chen, Mohammad M Sultan, Theofanis Karaletsos
DNA-encoded library (DEL) has proven to be a powerful tool that utilizes combinatorially constructed small molecules to facilitate highly efficient screening experiments. These selection experiments, involving multiple stages of washing, elution, and identification of potent binders via unique DNA barcodes, often generate complex data. This complexity can potentially mask the underlying signals, necessitating the application of computational tools, such as machine learning, to uncover valuable insights. We introduce a compositional deep probabilistic model of DEL data, DEL-Compose , which decomposes molecular representations into their monosynthon, disynthon, and trisynthon building blocks and capitalizes on the inherent hierarchical structure of these molecules by modeling latent reactions between embedded synthons...
February 9, 2024: Journal of Chemical Information and Modeling
https://read.qxmd.com/read/38310838/ultrafast-and-selective-capture-of-99-tco-4-reo-4-from-wastewater-by-hyper-branched-quaternary-ammonium-group-functionalized-resin
#40
JOURNAL ARTICLE
Juan Tong, Junqiang Yang, Xiaobo Li, Kesheng Hu, Yiman Lu, Man Wang, Yichen Hu, Keliang Shi
99 Tc primarily exists high mobility in the natural aqueous environment due to its extremely high solubility and non-complexing features, which can easily cause radioactive pollution. We herein report a general strategy for constructing a novel resin (SiPAN-PEI) with multiple positive charges nitrogen, exhibiting ultrafast adsorption kinetics (< 3 min), superior adsorption capacities (463.96 mg g-1 ), and excellent selectivity in the presence of excess competitive anions, which exceed those of most commercial resins...
February 1, 2024: Journal of Hazardous Materials
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