keyword
https://read.qxmd.com/read/38389787/grid-cells-the-missing-link-in-understanding-parkinson-s-disease
#21
JOURNAL ARTICLE
Alexander Reinshagen
The mechanisms underlying Parkinson's disease (PD) are complex and not fully understood, and the box-and-arrow model among other current models present significant challenges. This paper explores the potential role of the allocentric brain and especially its grid cells in several PD motor symptoms, including bradykinesia, kinesia paradoxa, freezing of gait, the bottleneck phenomenon, and their dependency on cueing. It is argued that central hubs, like the locus coeruleus and the pedunculopontine nucleus, often narrowly interpreted in the context of PD, play an equally important role in governing the allocentric brain as the basal ganglia...
2024: Frontiers in Neuroscience
https://read.qxmd.com/read/38375686/climate-regulation-processes-are-linked-to-the-functional-composition-of-plant-communities-in-european-forests-shrublands-and-grasslands
#22
JOURNAL ARTICLE
Stephan Kambach, Fabio Attorre, Irena Axmanová, Ariel Bergamini, Idoia Biurrun, Gianmaria Bonari, Maria Laura Carranza, Alessandro Chiarucci, Milan Chytrý, Jürgen Dengler, Emmanuel Garbolino, Valentin Golub, Thomas Hickler, Ute Jandt, Jan Jansen, Borja Jiménez-Alfaro, Dirk Nikolaus Karger, Zdeňka Lososová, Valerijus Rašomavičius, Solvita Rūsiņa, Petra Sieber, Angela Stanisci, Wilfried Thuiller, Erik Welk, Niklaus E Zimmermann, Helge Bruelheide
Terrestrial ecosystems affect climate by reflecting solar irradiation, evaporative cooling, and carbon sequestration. Yet very little is known about how plant traits affect climate regulation processes (CRPs) in different habitat types. Here, we used linear and random forest models to relate the community-weighted mean and variance values of 19 plant traits (summarized into eight trait axes) to the climate-adjusted proportion of reflected solar irradiation, evapotranspiration, and net primary productivity across 36,630 grid cells at the European extent, classified into 10 types of forest, shrubland, and grassland habitats...
February 2024: Global Change Biology
https://read.qxmd.com/read/38372749/applying-xgboost-and-shap-to-open-source-data-to-identify-key-drivers-and-predict-likelihood-of-wolf-pair-presence
#23
JOURNAL ARTICLE
Jeanine Schoonemann, Jurriaan Nagelkerke, Terri G Seuntjens, Nynke Osinga, Diederik van Liere
Wolves have returned to Germany since 2000. Numbers have grown to 209 territorial pairs in 2021. XGBoost machine learning, combined with SHAP analysis is applied to predict German wolf pair presence in 2022 for 10 × 10 km grid cells. Model input consisted of 38 variables from open sources, covering the period 2000 to 2021. The XGBoost model predicted well, with 0.91 as the AUC. SHAP analysis ranked the variables: distance to the closest neighboring wolf pair was the main driver for a grid cell to become occupied by a wolf pair...
February 19, 2024: Environmental Management
https://read.qxmd.com/read/38368457/a-consistent-map-in-the-medial-entorhinal-cortex-supports-spatial-memory
#24
JOURNAL ARTICLE
Taylor J Malone, Nai-Wen Tien, Yan Ma, Lian Cui, Shangru Lyu, Garret Wang, Duc Nguyen, Kai Zhang, Maxym V Myroshnychenko, Jean Tyan, Joshua A Gordon, David A Kupferschmidt, Yi Gu
The medial entorhinal cortex (MEC) is hypothesized to function as a cognitive map for memory-guided navigation. How this map develops during learning and influences memory remains unclear. By imaging MEC calcium dynamics while mice successfully learned a novel virtual environment over ten days, we discovered that the dynamics gradually became more spatially consistent and then stabilized. Additionally, grid cells in the MEC not only exhibited improved spatial tuning consistency, but also maintained stable phase relationships, suggesting a network mechanism involving synaptic plasticity and rigid recurrent connectivity to shape grid cell activity during learning...
February 17, 2024: Nature Communications
https://read.qxmd.com/read/38363660/advantages-of-persistent-cohomology-in-estimating-animal-location-from-grid-cell-population-activity
#25
JOURNAL ARTICLE
Daisuke Kawahara, Shigeyoshi Fujisawa
Many cognitive functions are represented as cell assemblies. In the case of spatial navigation, the population activity of place cells in the hippocampus and grid cells in the entorhinal cortex represents self-location in the environment. The brain cannot directly observe self-location information in the environment. Instead, it relies on sensory information and memory to estimate self-location. Therefore, estimating low-dimensional dynamics, such as the movement trajectory of an animal exploring its environment, from only the high-dimensional neural activity is important in deciphering the information represented in the brain...
February 16, 2024: Neural Computation
https://read.qxmd.com/read/38347945/path-integration-deficits-are-associated-with-phosphorylated-tau-accumulation-in-the-entorhinal-cortex
#26
JOURNAL ARTICLE
Riki Koike, Yoshiyuki Soeda, Atsushi Kasai, Yusuke Fujioka, Shinsuke Ishigaki, Akihiro Yamanaka, Yuta Takaichi, James K Chambers, Kazuyuki Uchida, Hirohisa Watanabe, Akihiko Takashima
Alzheimer's disease is a devastating disease that is accompanied by dementia, and its incidence increases with age. However, no interventions have exhibited clear therapeutic effects. We aimed to develop and characterize behavioural tasks that allow the earlier identification of signs preceding dementia that would facilitate the development of preventative and therapeutic interventions for Alzheimer's disease. To this end, we developed a 3D virtual reality task sensitive to the activity of grid cells in the entorhinal cortex, which is the region that first exhibits neurofibrillary tangles in Alzheimer's disease...
2024: Brain communications
https://read.qxmd.com/read/38340408/spatiotemporal-characteristics-and-influencing-factors-for-joint-events-of-air-pollution-wave-and-cold-wave-in-china
#27
JOURNAL ARTICLE
Yujia Huang, Peng Wang, Zhengyu Yang, Pei Yu, Tingting Ye, Yuming Guo, Lei Huang
Climate change triggered more environmental extremes. The joint events of air pollution wave and cold wave showed higher health risks than independent events, but little evidence is available for the spatiotemporal features of their co-occurrence. To better understand and forecast the joint events, a method framework was developed in this study. The temporal trend and spatial distribution of count and duration for joint events were measured at each grid cell (0.5°×0.5°) by integrating the PM2...
February 7, 2024: Environment International
https://read.qxmd.com/read/38334473/ratinabox-a-toolkit-for-modelling-locomotion-and-neuronal-activity-in-continuous-environments
#28
JOURNAL ARTICLE
Tom M George, Mehul Rastogi, William John de Cothi, Claudia Clopath, Kimberly Stachenfeld, Caswell Barry
Generating synthetic locomotory and neural data is a useful yet cumbersome step commonly required to study theoretical models of the brain's role in spatial navigation. This process can be time consuming and, without a common framework, makes it difficult to reproduce or compare studies which each generate test data in different ways. In response, we present RatInABox, an open-source Python toolkit designed to model realistic rodent locomotion and generate synthetic neural data from spatially modulated cell types...
February 9, 2024: ELife
https://read.qxmd.com/read/38316560/spontaneous-dynamics-of-hippocampal-place-fields-in-a-model-of-combinatorial-competition-among-stable-inputs
#29
JOURNAL ARTICLE
Francesco Savelli
We present computer simulations illustrating how the plastic integration of spatially stable inputs could contribute to the dynamic character of hippocampal spatial representations. In novel environments of slightly larger size than typical apparatus, the emergence of well-defined place fields in real place cells seems to rely on inputs from normally functioning grid cells. Theoretically, the grid-to-place transformation is possible if a place cell is able to respond selectively to a combination of suitably aligned grids...
February 5, 2024: Journal of Neuroscience
https://read.qxmd.com/read/38298653/mortality-burden-attributable-to-exceptional-pm-2-5-air-pollution-events-in-australian-cities-a-health-impact-assessment
#30
JOURNAL ARTICLE
Lucas Hertzog, Geoffrey G Morgan, Cassandra Yuen, Karthik Gopi, Gavin F Pereira, Fay H Johnston, Martin Cope, Timothy B Chaston, Aditya Vyas, Sotiris Vardoulakis, Ivan C Hanigan
BACKGROUND: People living in Australian cities face increased mortality risks from exposure to extreme air pollution events due to bushfires and dust storms. However, the burden of mortality attributable to exceptional PM2.5 levels has not been well characterised. We assessed the burden of mortality due to PM2.5 pollution events in Australian capital cities between 2001 and 2020. METHODS: For this health impact assessment, we obtained data on daily counts of deaths for all non-accidental causes and ages from the Australian National Vital Statistics Register...
January 30, 2024: Heliyon
https://read.qxmd.com/read/38292309/spatial-temporal-resolution-implementation-of-cloud-aerosols-data-through-satellite-cross-correlation
#31
JOURNAL ARTICLE
Francesca Manenti, Stefano Cavazzani, Chiara Bertolin, Sergio Ortolani, Pietro Fiorentin
The Moderate Resolution Imaging Spectroradiometer (MODIS) instrument aboard Terra and Aqua satellites provides measurements of several atmospheric parameters. This paper focuses on the cloud fraction data representing the number of cloudy pixels divided by the total number of pixels, and available through 1° x 1° grids spatial resolution with daily or monthly temporal resolution. The aim of the study is to propose a novel method called The Spatial-Temporal Implementation Algorithm (STIA) for analysing satellite daily 1° x 1°grid cloud fraction average values for•Comparing two datasets retrieved by MODIS aboard Aqua and Terra satellites to obtain information on the cloud formation in the afternoon and morning, respectively, thus enhancing the temporal resolution...
June 2024: MethodsX
https://read.qxmd.com/read/38243607/patterns-of-grewia-malvaceae-diversity-across-geographic-scales-in-africa-and-madagascar
#32
JOURNAL ARTICLE
Nisa Karimi, Margaret M Hanes
BACKGROUND AND AIMS: Quantifying spatial species richness is useful to describe biodiversity patterns across broad geographic areas, especially in large, poorly known plant groups. We explore patterns and predictors of species richness across Africa in one such group; the paleotropical genus Grewia L. (Malvaceae). METHODS: Grewia species richness was quantified by extracting herbarium records from GBIF and Tropicos and creating geographic grids at varying spatial scales...
January 18, 2024: Annals of Botany
https://read.qxmd.com/read/38233444/the-multi-temporal-and-multi-dimensional-global-urban-centre-database-to-delineate-and-analyse-world-cities
#33
JOURNAL ARTICLE
Michele Melchiorri, Sergio Freire, Marcello Schiavina, Aneta Florczyk, Christina Corbane, Luca Maffenini, Martino Pesaresi, Panagiotis Politis, Filip Szabo, Daniele Ehrlich, Pierpaolo Tommasi, Donato Airaghi, Luigi Zanchetta, Thomas Kemper
Monitoring sustainable urban development requires comparable geospatial information on cities across several thematic domains. Here we present the first global database combining such information with city extents. The Global Human Settlement Urban Centre Database (GHS-UCDB) is produced by geospatial data integration to characterise more than 10,000 urban centres worldwide. The database is multi-dimensional and multi-temporal, containing 28 variables across five domains and having multitemporal attributes for one or more epochs when the UC are delineated (1975-1990-2000-2015)...
January 17, 2024: Scientific Data
https://read.qxmd.com/read/38232782/grid-codes-underlie-multiple-cognitive-maps-in-the-human-brain
#34
JOURNAL ARTICLE
Dong Chen, Nikolai Axmacher, Liang Wang
Grid cells fire at multiple positions that organize the vertices of equilateral triangles tiling a 2D space and are well studied in rodents. The last decade witnessed rapid progress in two other research lines on grid codes-empirical studies on distributed human grid-like representations in physical and multiple non-physical spaces, and cognitive computational models addressing the function of grid cells based on principles of efficient and predictive coding. Here, we review the progress in these fields and integrate these lines into a systematic organization...
January 15, 2024: Progress in Neurobiology
https://read.qxmd.com/read/38231426/the-mosaic-structure-of-the-mammalian-cognitive-map
#35
REVIEW
Kate J Jeffery
The cognitive map, proposed by Tolman in the 1940s, is a hypothetical internal representation of space constructed by the brain to enable an animal to undertake flexible spatial behaviors such as navigation. The subsequent discovery of place cells in the hippocampus of rats suggested that such a map-like representation does exist, and also provided a tool with which to explore its properties. Single-neuron studies in rodents conducted in small singular spaces have suggested that the map is founded on a metric framework, preserving distances and directions in an abstract representational format...
January 17, 2024: Learning & Behavior
https://read.qxmd.com/read/38216703/evaluation-of-precipitation-across-the-contiguous-united-states-alaska-and-puerto-rico-in-multi-decadal-convection-permitting-simulations
#36
JOURNAL ARTICLE
Akintomide Afolayan Akinsanola, Chunyong Jung, Jiali Wang, Veerabhadra Rao Kotamarthi
This study is an early effort to generate a multi-decadal convection-permitting regional climate dataset that covers nearly the entire North American continent. We assessed a 20 year dynamically downscaled regional climate simulation at a 4 km spatial resolution with explicit convection across the contiguous United States (CONUS), Alaska, and Puerto Rico. Specifically, we evaluated the model's performance in representing mean, 95th percentile, and extreme precipitation across regions. Our findings indicate that when compared with ERA5 reanalysis, the forcing data, convection-permitting simulation improves representations of seasonal, 95th percentile, and extreme precipitation over a large portion of the CONUS, Alaska, and Puerto Rico, particularly in areas where precipitation is heaviest...
January 12, 2024: Scientific Reports
https://read.qxmd.com/read/38181958/gis-based-land-suitability-analysis-for-the-optimal-location-of-integrated-multi-trophic-aquaponic-systems
#37
JOURNAL ARTICLE
Andrea Zaniboni, Patrizia Tassinari, Daniele Torreggiani
Aquaponics has witnessed global proliferation and a notable enhancement in sustainability in recent years. Consequently, it assumes paramount importance to delineate optimal locations for its implementation, in fact, the success of an aquaponic facility also depends on its geographical placement, necessitating consideration of many variables encompassing natural resources, socioeconomic factors, infrastructural availability and environmental constraints, whether natural or artificial. This paper focuses on the definition and test in the Emilia-Romagna region (Italy) of a GIS-based multi-criteria land suitability assessment model aimed at allowing the diffusion and environmental integration of innovative integrated multi-trophic aquaponic systems...
January 3, 2024: Science of the Total Environment
https://read.qxmd.com/read/38178693/comparison-of-head-direction-cell-firing-characteristics-across-thalamo-parahippocampal-circuitry
#38
JOURNAL ARTICLE
Benjamin J Clark, Patrick A LaChance, Shawn S Winter, Max L Mehlman, Will Butler, Ariyana LaCour, Jeffrey S Taube
Head direction (HD) cells, which fire persistently when an animal's head is pointed in a particular direction, are widely thought to underlie an animal's sense of spatial orientation and have been identified in several limbic brain regions. Robust HD cell firing is observed throughout the thalamo-parahippocampal system, although recent studies report that parahippocampal HD cells exhibit distinct firing properties, including conjunctive aspects with other spatial parameters, which suggest they play a specialized role in spatial processing...
January 4, 2024: Hippocampus
https://read.qxmd.com/read/38135708/local-exposure-misclassification-in-national-models-relationships-with-urban-infrastructure-and-demographics
#39
JOURNAL ARTICLE
Sarah E Chambliss, Mark Joseph Campmier, Michelle Audirac, Joshua S Apte, Corwin M Zigler
BACKGROUND: National-scale linear regression-based modeling may mischaracterize localized patterns, including hyperlocal peaks and neighborhood- to regional-scale gradients. For studies focused on within-city differences, this mischaracterization poses a risk of exposure misclassification, affecting epidemiological and environmental justice conclusions. OBJECTIVE: Characterize the difference between intraurban pollution patterns predicted by national-scale land use regression modeling and observation-based estimates within a localized domain and examine the relationship between that difference and urban infrastructure and demographics...
December 22, 2023: Journal of Exposure Science & Environmental Epidemiology
https://read.qxmd.com/read/38124237/areas-of-endemism-of-pteridaceae-polypodiopsida-in-brazil-a-first-approach
#40
JOURNAL ARTICLE
Aline Possamai Della, Jefferson Prado
Areas of endemism (AoE) comprise regions host to two or more endemic taxa, whose distributional limits are congruent and not random. These areas are important for two reasons: they comprise the smallest geographic units for biogeographic analyses and they are priority targets for conservation actions. Ferns are a monophyletic group that despite having a wide geographic distribution, concentrates great species richness and endemism in some regions (centres). The southern and southeastern regions of Brazil comprise one of these centres for the Neotropics...
December 20, 2023: Cladistics
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