keyword
https://read.qxmd.com/read/36795294/copy-number-variation-and-osteoporosis
#21
REVIEW
Nika Lovšin
PURPOSE OF REVIEW: The purpose of this review is to summarize recent findings on copy number variations and susceptibility to osteoporosis. RECENT FINDINGS: Osteoporosis is highly influenced by genetic factors, including copy number variations (CNVs). The development and accessibility of whole genome sequencing methods has accelerated the study of CNVs and osteoporosis. Recent findings include mutations in novel genes and validation of previously known pathogenic CNVs in monogenic skeletal diseases...
April 2023: Current Osteoporosis Reports
https://read.qxmd.com/read/36788092/expanding-the-molecular-diversity-of-cic-rearranged-sarcomas-with-novel-and-very-rare-partners
#22
JOURNAL ARTICLE
Konstantinos Linos, Josephine K Dermawan, Tejus Bale, Marc K Rosenblum, Samuel Singer, William Tap, Mark A Dickson, Jason L Hornick, Cristina R Antonescu
Capicua transcriptional repressor (CIC)-rearranged sarcoma represents a distinct pathologic entity and constitutes the second most prevalent category of undifferentiated round cell sarcomas (URCSs) after Ewing sarcoma. The 2 most common translocations are t(4;19) and t(10;19), resulting in CIC fusions with either DUX4 and DUX4L paralog, respectively; however, other rare variant fusions have also been reported. In this study, we expand the molecular spectrum of CIC-gene partners, reporting on 5 cases of URCSs showing CIC fusions with AXL, CITED1, SYK, and LEUTX by targeted RNA or DNA sequencing...
May 2023: Modern Pathology
https://read.qxmd.com/read/36778918/adrb2-regulates-the-proliferation-and-metastasis-of-gastrointestinal-stromal-tumor-cells-by-enhancing-the-etv1-c-kit-signaling
#23
JOURNAL ARTICLE
Sijun Chen, Feijing Wu, Jiaxuan Zhang, Jianwei Zhu, Xiaorong Zhou, Xiaofei Zhi
BACKGROUND: Gastrointestinal stromal tumor (GIST) originates from a pacemaker cell, the Cajal cell. However, little is known about the cancer neuroscience in GIST. In this study, we aimed to elucidate the clinical and biological roles of adrenoceptor beta 2 (ADRB2) in GIST. METHODS: Immunohistochemistry was used to evaluate the expression of ADRB2 in GIST tissues. The biological effects of ADRB2 on GIST cell proliferation, migration, invasion, and apoptosis were explored using Cell Counting Kit -8, plate colony formation assay, transwell invasion assay, and flow cytometry...
2023: Journal of Oncology
https://read.qxmd.com/read/36738683/integrated-analysis-of-atac-seq-and-rna-seq-reveals-the-transcriptional-regulation-network-in-sle
#24
JOURNAL ARTICLE
Jiali Wu, Yuwei Li, Delong Feng, Yaqin Yu, Haojun Long, Zhi Hu, Qianjin Lu, Ming Zhao
BACKGROUND: CD4+ T cells have a vital role in the pathogenesis of systemic lupus erythematosus (SLE), abnormal gene expression in CD4+ T cells partly accounting for dysfunctional CD4+ T cells. However, the underying regulatory mechanisms of abnormal gene expression in CD4+ T cells derived from SLE patients are not fully understood. METHODS: The peripheral blood CD4+ T cells were acquired from 4 SLE patients and 4 matched healthy controls. Assay for transposase-accessible chromatin using sequencing (ATAC-seq) was conducted to screen differentially accessible chromatin regions between SLE and normals, and motif prediction was used to identify potentially key transcription factors (TFs) involved in CD4+ T dysfunction...
February 2, 2023: International Immunopharmacology
https://read.qxmd.com/read/36725886/deubiquitylation-of-rab35-by-usp32-promotes-the-transmission-of-imatinib-resistance-by-enhancing-exosome-secretion-in-gastrointestinal-stromal-tumours
#25
JOURNAL ARTICLE
Chao Li, Zhishuang Gao, Zhiwei Cui, Zonghang Liu, Yibo Bian, Haoyu Sun, Nuofan Wang, Zhongyuan He, Bowen Li, Fengyuan Li, Zheng Li, Linjun Wang, Diancai Zhang, Li Yang, Zekuan Xu, Hao Xu
Imatinib is a tyrosine kinase inhibitor that is widely used to combat gastrointestinal stromal tumours (GISTs). However, secondary resistance to imatinib is an important challenge in GIST treatment. Recent studies have demonstrated that cancer-derived nanosized exosomes play a key role in intercellular communication, but little is known about the roles of exosomes in imatinib-resistant GISTs. Here, we reveal that exosomes released from imatinib-resistant GISTs transmit drug resistance to imatinib-sensitive tumours...
February 1, 2023: Oncogene
https://read.qxmd.com/read/36695533/loss-of-etv1-er81-in-motor-neurons-leads-to-reduced-monosynaptic-inputs-from-proprioceptive-sensory-neurons
#26
JOURNAL ARTICLE
David R Ladle, Simon Hippenmeyer
Presynaptic inputs determine the pattern of activation of postsynaptic neurons in a neural circuit. Molecular and genetic pathways that regulate the selective formation of subsets of presynaptic inputs are largely unknown, despite significant understanding of the general process of synaptogenesis. In this study, we have begun to identify such factors using the spinal monosynaptic stretch reflex circuit as a model system. In this neuronal circuit, Ia proprioceptive afferents establish monosynaptic connections with spinal motor neurons that project to the same muscle (termed homonymous connections) or muscles with related or synergistic function...
January 25, 2023: Journal of Neurophysiology
https://read.qxmd.com/read/36647117/cic-reduces-xct-slc7a11-expression-and-glutamate-release-in-glioma
#27
JOURNAL ARTICLE
Jong-Whi Park, Omer Kilic, Minh Deo, Kevin Jimenez-Cowell, Engin Demirdizen, Hyunggee Kim, Şevin Turcan
Capicua (CIC) is an important downstream molecule of RTK/RAS/MAPK pathway. The regulatory mechanism of CIC underlying tumorigenesis in oligodendroglioma, where CIC is frequently mutated, has yet to be fully elucidated. Using patient-derived glioma lines, RNA-sequencing and bioinformatic analysis of publicly available databases, we investigated how CIC loss- or gain-of-function regulates its downstream targets, cell proliferation and glutamate release. Our results indicate an increased frequency of CIC truncating mutations in oligodendroglioma during progression...
January 16, 2023: Acta Neuropathologica Communications
https://read.qxmd.com/read/36562110/conditional-gene-regulation-models-demonstrate-a-pro-proliferative-role-for-growth-hormone-receptor-in-prostate-cancer
#28
JOURNAL ARTICLE
Christopher J Unterberger, Sean J McIlwain, Philippos K Tsourkas, Vilena I Maklakova, Jordyn L Prince, Abigail Onesti, Rong Hu, John J Kopchick, Steven M Swanson, Paul C Marker
BACKGROUND: Humans with inactivating mutations in growth hormone receptor (GHR) have lower rates of cancer, including prostate cancer. Similarly, mice with inactivating Ghr mutations are protected from prostatic intraepithelial neoplasia in the C3(1)/TAg prostate cancer model. However, gaps in clinical relevance in those models persist. The current study addresses these gaps and the ongoing role of Ghr in prostate cancer using loss-of-function and gain-of-function models. METHODS: Conditional Ghr inactivation was achieved in the C3(1)/TAg model by employing a tamoxifen-inducible Cre and a prostate-specific Cre...
December 22, 2022: Prostate
https://read.qxmd.com/read/36551682/sh3bp2-silencing-increases-mirnas-targeting-etv1-and-microphthalmia-associated-transcription-factor-decreasing-the-proliferation-of-gastrointestinal-stromal-tumors
#29
JOURNAL ARTICLE
Elizabeth Proaño-Pérez, Eva Serrano-Candelas, Cindy Mancia, Arnau Navinés-Ferrer, Mario Guerrero, Margarita Martin
Gastrointestinal stromal tumors (GISTs) are the most common mesenchymal tumors of the gastrointestinal tract. Gain of function in receptor tyrosine kinases type III, KIT, or PDGFRA drives the majority of GIST. Previously, our group reported that silencing of the adaptor molecule SH3 Binding Protein 2 (SH3BP2) downregulated KIT and PDGFRA and microphthalmia-associated transcription factor (MITF) levels and reduced tumor growth. This study shows that SH3BP2 silencing also decreases levels of ETV1, a required factor for GIST growth...
December 15, 2022: Cancers
https://read.qxmd.com/read/36494423/in-vitro-modelling-of-human-proprioceptive-sensory-neurons-in-the-neuromuscular-system
#30
JOURNAL ARTICLE
Maider Badiola-Mateos, Tatsuya Osaki, Roger Dale Kamm, Josep Samitier
Proprioceptive sensory neurons (pSN) are an essential and undervalued part of the neuromuscular circuit. A protocol to differentiate healthy and amyotrophic lateral sclerosis (ALS) human neural stem cells (hNSC) into pSN, and their comparison with the motor neuron (MN) differentiation process from the same hNSC sources, facilitated the development of in vitro co-culture platforms. The obtained pSN spheroids cultured interact with human skeletal myocytes showing the formation of annulospiral wrapping-like structures between TrkC + neurons and a multinucleated muscle fibre, presenting synaptic bouton-like structures in the contact point...
December 9, 2022: Scientific Reports
https://read.qxmd.com/read/36449109/structural-variation-and-eqtl-analysis-in-two-experimental-populations-of-chickens-divergently-selected-for-feather-pecking-behavior
#31
JOURNAL ARTICLE
Clemens Falker-Gieske, Jörn Bennewitz, Jens Tetens
Feather pecking (FP) is a damaging nonaggressive behavior in laying hens with a heritable component. Its occurrence has been linked to the immune system, the circadian clock, and foraging behavior. Furthermore, dysregulation of miRNA biogenesis, disturbance of the gamma-aminobutyric acid (GABAergic) system, as well as neurodevelopmental deficiencies are currently under debate as factors influencing the propensity for FP behavior. Past studies, which focused on the dissection of the genetic factors involved in FP, relied on single nucleotide polymorphisms (SNPs) and short insertions and deletions < 50 bp (InDels)...
January 2023: Neurogenetics
https://read.qxmd.com/read/36405929/identification-of-key-long-non-coding-rna-associated-competing-endogenous-rna-axes-in-brodmann-area-10-brain-region-of-schizophrenia-patients
#32
JOURNAL ARTICLE
Hani Sabaie, Mahdi Gholipour, Mohammad Reza Asadi, Samin Abed, Mirmohsen Sharifi-Bonab, Mohammad Taheri, Bashdar Mahmud Hussen, Serge Brand, Seyedeh Morvarid Neishabouri, Maryam Rezazadeh
Schizophrenia (SCZ) is a serious mental condition with an unknown cause. According to the reports, Brodmann Area 10 (BA10) is linked to the pathology and cortical dysfunction of SCZ, which demonstrates a number of replicated findings related to research on SCZ and the dysfunction in tasks requiring cognitive control in particular. Genetics' role in the pathophysiology of SCZ is still unclear. Therefore, it may be helpful to understand the effects of these changes on the onset and progression of SCZ to find novel mechanisms involved in the regulation of gene transcription...
2022: Frontiers in Psychiatry
https://read.qxmd.com/read/36403313/a-review-on-the-role-of-pcgem1-lncrna-in-cancer
#33
REVIEW
Soudeh Ghafouri-Fard, Tayyebeh Khoshbakht, Bashdar Mahmud Hussen, Aria Baniahmad, Mohammad Taheri, Majid Mokhtari
PCGEM1 Prostate-Specific Transcript is an lncRNA participating in the carcinogenesis process in different tissues. The gene coding this lncRNA is located on chr2:192,749,008-192,783,952 (GRCh38/hg38), plus strand and has 34,945 bases. In addition to prostate cancer, it has been shown to influence progression of cervical, endometrial, gastric, ovarian, hepatocellular and renal cancers. Functionally, PCGEM1 regulates activity of a number of molecular axes, namely miR-642a-5p/LGMN, miR-182/FBXW11, miR-129-5p/STAT3, miR-129-5p/P4HA2, miR-433-3p/FGF2, miR-539-5p/CDK6, miR-129-5p/ETV1, miR-433-3p/WTAP, miR-590-3p/SOX11 and miR-506-3p/TRIAP1...
November 15, 2022: Pathology, Research and Practice
https://read.qxmd.com/read/36388958/direct-reprogramming-of-cardiomyocytes-into-cardiac-purkinje-like-cells
#34
JOURNAL ARTICLE
Nicole Prodan, Faheem Ershad, Arfaxad Reyes-Alcaraz, Luge Li, Brandon Mistretta, Lei Gonzalez, Zhoulyu Rao, Cunjiang Yu, Preethi H Gunaratne, Na Li, Robert J Schwartz, Bradley K McConnell
Currently, there are no treatments that ameliorate cardiac cell death, the underlying basis of cardiovascular disease. An unexplored cell type in cardiac regeneration is cardiac Purkinje cells; specialized cells from the cardiac conduction system (CCS) responsible for propagating electrical signals. Purkinje cells have tremendous potential as a regenerative treatment because they may intrinsically integrate with the CCS of a recipient myocardium, resulting in more efficient electrical conduction in diseased hearts...
November 18, 2022: IScience
https://read.qxmd.com/read/36383412/the-cic-erf-co-deletion-underlies-fusion-independent-activation-of-ets-family-member-etv1-to-drive-prostate-cancer-progression
#35
JOURNAL ARTICLE
Nehal Gupta, Hanbing Song, Wei Wu, Rovingaile K Ponce, Yone K Lin, Ji Won Kim, Eric J Small, Felix Y Feng, Franklin W Huang, Ross A Okimoto
Human prostate cancer can result from chromosomal rearrangements that lead to aberrant ETS gene expression. The mechanisms that lead to fusion-independent ETS factor upregulation and prostate oncogenesis remain relatively unknown. Here, we show that two neighboring transcription factors, Capicua ( CIC ) and ETS2 repressor factor ( ERF ), which are co-deleted in human prostate tumors can drive prostate oncogenesis. Concurrent CIC and ERF loss commonly occur through focal genomic deletions at chromosome 19q13...
November 16, 2022: ELife
https://read.qxmd.com/read/36358827/cic-rearranged-sarcomas-an-intriguing-entity-that-may-lead-the-way-to-the-comprehension-of-more-common-cancers
#36
REVIEW
Caterina Mancarella, Marianna Carrabotta, Lisa Toracchio, Katia Scotlandi
Capicua transcriptional repressor (CIC)-rearranged sarcoma, belonging to the undifferentiated round cells sarcoma family, is characterized by high metastatic rate and poor chemo response. CIC sarcoma represents a new entity harboring the recurrent chromosomal translocation between CIC and, in most of the cases, DUX4 . CIC-DUX4 imposes a CIC-specific transcriptional signature, which drives cell transformation, proliferation, and migration. While the discovery of the fusion represented the first evidence of a role of CIC in cancer, a complete comprehension of CIC-rearranged activity is still required before providing new potential avenues for therapy...
November 2, 2022: Cancers
https://read.qxmd.com/read/36241703/the-microphthalmia-associated-transcription-factor-is-involved-in-gastrointestinal-stromal-tumor-growth
#37
JOURNAL ARTICLE
Proaño-Pérez Elizabeth, Serrano-Candelas Eva, García-Valverde Alfonso, Rosell Jordi, Gómez-Peregrina David, Navinés-Ferrer Arnau, Guerrero Mario, Serrano César, Martín Margarita
Gastrointestinal stromal tumors (GISTs) are the most common neoplasms of mesenchymal origin, and most of them emerge due to the oncogenic activation of KIT or PDGFRA receptors. Despite their relevance in GIST oncogenesis, critical intermediates mediating the KIT/PDGFRA transforming program remain mostly unknown. Previously, we found that the adaptor molecule SH3BP2 was involved in GIST cell survival, likely due to the co-regulation of the expression of KIT and Microphthalmia-associated transcription factor (MITF)...
October 14, 2022: Cancer Gene Therapy
https://read.qxmd.com/read/36157484/single-cell-landscape-analysis-reveals-distinct-regression-trajectories-and-novel-prognostic-biomarkers-in-primary-neuroblastoma
#38
JOURNAL ARTICLE
Qingqing Liu, Zhenni Wang, Yan Jiang, Fengling Shao, Yue Ma, Mingzhao Zhu, Qing Luo, Yang Bi, Lijian Cao, Liang Peng, Jianwu Zhou, Zhenzhen Zhao, Xiaobin Deng, Tong-Chuan He, Shan Wang
Neuroblastoma (NB), which is the most common pediatric extracranial solid tumor, varies widely in its clinical presentation and outcome. NB has a unique ability to spontaneously differentiate and regress, suggesting a potential direction for therapeutic intervention. However, the underlying mechanisms of regression remain largely unknown, and more reliable prognostic biomarkers are needed for predicting trajectories for NB. We performed scRNA-seq analysis on 17 NB clinical samples and three peritumoral adrenal tissues...
November 2022: Genes & Diseases
https://read.qxmd.com/read/36125519/transcriptomes-of-prostate-cancer-with-tmprss2-erg-and-other-ets-fusions
#39
JOURNAL ARTICLE
Konrad H Stopsack, Xiaofeng A Su, J Bailey Vaselkiv, Rebecca E Graff, Ericka M Ebot, Andreas Pettersson, Rosina T Lis, Michelangelo Fiorentino, Massimo Loda, Kathryn L Penney, Tamara L Lotan, Lorelei A Mucci
The most common somatic event in primary prostate cancer is a fusion between the androgen-related TMPRSS2 gene and the ERG oncogene. Tumors with these fusions, which occur early in carcinogenesis, have a distinctive etiology. A smaller subset of other tumors harbor fusions between TMPRSS2 and members of the ETS transcription factor family other than ERG. To assess the genomic similarity of tumors with non-ERG ETS fusions and those with fusions involving ERG, this study derived a transcriptomic signature of non-ERG ETS fusions and assessed this signature and ERG-related gene expression in 1,050 men with primary prostate cancer from three independent population-based and hospital-based studies...
September 20, 2022: Molecular Cancer Research: MCR
https://read.qxmd.com/read/36110998/the-etv1-er81-transcription-factor-coordinates-myelination-related-genes-to-regulate-schwann-cell-differentiation-and-myelination
#40
JOURNAL ARTICLE
Parizat Askar, Jinghui Xu, Junxia Hu, Jianghong Shangguan, Hualin Sun, Songlin Zhou, Xiaoming Yang, Gang Chen, Wenfeng Su, Yun Gu
Background: Axonal myelination is critical for the functioning of vertebrate nervous system. Myelin sheath malformation or degeneration can cause a variety of neurological diseases. Our previous study identified multiple potential myelination-related transcriptional factors (TFs), including expressed sequence tag (ETS) variant transcription factor 1 (Etv1)/Er81, via gene microarray analysis of Schwann cells (SCs) at various myelination stages. Etv1 is known to be involved in the regulation of neuronal specialization, muscle spindle differentiation, and sensorimotor connectivity...
August 2022: Annals of Translational Medicine
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