keyword
https://read.qxmd.com/read/38648017/an-innovative-breast-cancer-detection-framework-using-multiscale-dilated-densenet-with-attention-mechanism
#1
JOURNAL ARTICLE
Subhashini Ramachandran, Rajasekar Velusamy, Namakkal Venkataraman Srinivasan Sree Rathna Lakshmi, Chakaravarthi Sivanandam
Cancer-related deadly diseases affect both developed and underdeveloped nations worldwide. Effective network learning is crucial to more reliably identify and categorize breast carcinoma in vast and unbalanced image datasets. The absence of early cancer symptoms makes the early identification process challenging. Therefore, from the perspectives of diagnosis, prevention, and therapy, cancer continues to be among the healthcare concerns that numerous researchers work to advance. It is highly essential to design an innovative breast cancer detection model by considering the complications presented in the classical techniques...
April 22, 2024: Network: Computation in Neural Systems
https://read.qxmd.com/read/38647634/in-vivo-epid-based-daily-treatment-error-identification-for-volumetric-modulated-arc-therapy-in-head-and-neck-cancers-with-a-hierarchical-convolutional-neural-network-a-feasibility-study
#2
JOURNAL ARTICLE
Yiling Zeng, Heng Li, Yu Chang, Yang Han, Hongyuan Liu, Bo Pang, Jun Han, Bin Hu, Junping Cheng, Sheng Zhang, Kunyu Yang, Hong Quan, Zhiyong Yang
We proposed a deep learning approach to classify various error types in daily VMAT treatment of head and neck cancer patients based on EPID dosimetry, which could provide additional information to support clinical decisions for adaptive planning. 146 arcs from 42 head and neck patients were analyzed. Anatomical changes and setup errors were simulated in 17,820 EPID images of 99 arcs obtained from 30 patients using in-house software for model training, validation, and testing. Subsequently, 141 clinical EPID images from 47 arcs belonging to the remaining 12 patients were utilized for clinical testing...
April 22, 2024: Physical and engineering sciences in medicine
https://read.qxmd.com/read/38647391/magnetic-nanoparticle-assisted-non-viral-crispr-cas9-for-enhanced-genome-editing-to-treat-rett-syndrome
#3
JOURNAL ARTICLE
Hyeon-Yeol Cho, Myungsik Yoo, Thanapat Pongkulapa, Hudifah Rabie, Alysson R Muotri, Perry T Yin, Jeong-Woo Choi, Ki-Bum Lee
The CRISPR-Cas9 technology has the potential to revolutionize the treatment of various diseases, including Rett syndrome, by enabling the correction of genes or mutations in human patient cells. However, several challenges need to be addressed before its widespread clinical application. These challenges include the low delivery efficiencies to target cells, the actual efficiency of the genome-editing process, and the precision with which the CRISPR-Cas system operates. Herein, the study presents a Magnetic Nanoparticle-Assisted Genome Editing (MAGE) platform, which significantly improves the transfection efficiency, biocompatibility, and genome-editing accuracy of CRISPR-Cas9 technology...
April 22, 2024: Advanced Science (Weinheim, Baden-Wurttemberg, Germany)
https://read.qxmd.com/read/38647152/eravacycline-an-antibacterial-drug-repurposed-for-pancreatic-cancer-therapy-insights-from-a-molecular-based-deep-learning-model
#4
JOURNAL ARTICLE
Adi Jabarin, Guy Shtar, Valeria Feinshtein, Eyal Mazuz, Bracha Shapira, Shimon Ben-Shabat, Lior Rokach
BACKGROUND: Pancreatic ductal adenocarcinoma (PDAC) remains a serious threat to health, with limited effective therapeutic options, especially due to advanced stage at diagnosis and its inherent resistance to chemotherapy, making it one of the leading causes of cancer-related deaths worldwide. The lack of clear treatment directions underscores the urgent need for innovative approaches to address and manage this deadly condition. In this research, we repurpose drugs with potential anti-cancer activity using machine learning (ML)...
March 27, 2024: Briefings in Bioinformatics
https://read.qxmd.com/read/38646416/artificial-neural-network-assisted-prediction-of-radiobiological-indices-in-head-and-neck-cancer
#5
JOURNAL ARTICLE
Saad Bin Saeed Ahmed, Shahzaib Naeem, Agha Muhammad Hammad Khan, Bilal Mazhar Qureshi, Amjad Hussain, Bulent Aydogan, Wazir Muhammad
BACKGROUND AND PURPOSE: We proposed an artificial neural network model to predict radiobiological parameters for the head and neck squamous cell carcinoma patients treated with radiation therapy. The model uses the tumor specification, demographics, and radiation dose distribution to predict the tumor control probability and the normal tissue complications probability. These indices are crucial for the assessment and clinical management of cancer patients during treatment planning. METHODS: Two publicly available datasets of 31 and 215 head and neck squamous cell carcinoma patients treated with conformal radiation therapy were selected...
2024: Frontiers in artificial intelligence
https://read.qxmd.com/read/38646101/perinatal-exposure-to-atazanavir-based-antiretroviral-regimens-in-a-mouse-model-leads-to-differential-long-term-motor-and-cognitive-deficits-dependent-on-the-nrti-backbone
#6
JOURNAL ARTICLE
Shreya H Dhume, Kayode Balogun, Ambalika Sarkar, Sebastian Acosta, Howard T J Mount, Lindsay S Cahill, John G Sled, Lena Serghides
BACKGROUND: Combination antiretroviral therapy (ART) use in pregnancy has been pivotal in improving maternal health and reducing perinatal HIV transmission. However, children born HIV-exposed uninfected fall behind their unexposed peers in several areas including neurodevelopment. The contribution of in utero ART exposure to these deficits is not clear. Here we present our findings of neurocognitive outcomes in adult mice exposed in utero to ART. METHODS: Dams were treated with a combination of ritonavir-boosted atazanavir with either abacavir plus lamivudine (ABC/3TC + ATV/r) or tenofovir disoproxil fumarate plus emtricitabine (TDF/FTC + ATV/r), or water as a control, administered daily from day of plug detection to birth...
2024: Frontiers in Molecular Neuroscience
https://read.qxmd.com/read/38645790/neuromodulation-techniques-in-poststroke-motor-impairment-recovery-efficacy-challenges-and-future-directions
#7
REVIEW
Xiang-Ling Huang, Ming-Yung Wu, Ciou-Chan Wu, Lian-Cing Yan, Mei-Huei He, Yu-Chen Chen, Sheng-Tzung Tsai
Cerebrovascular accidents, also known as strokes, represent a major global public health challenge and contribute to substantial mortality, disability, and socioeconomic burden. Multidisciplinary approaches for poststroke therapies are crucial for recovering lost functions and adapting to new limitations. This review discusses the potential of neuromodulation techniques, repetitive transcranial magnetic stimulation (rTMS), transcranial direct current stimulation, spinal cord stimulation (SCS), vagus nerve stimulation (VNS), and deep brain stimulation (DBS), as innovative strategies for facilitating poststroke recovery...
2024: Tzu chi medical journal
https://read.qxmd.com/read/38645059/effects-of-antiretroviral-treatment-on-central-and-peripheral-immune-response-in-mice-with-ecohiv-infection
#8
Qiaowei Xie, Mark D Namba, Lauren A Buck, Kyewon Park, Joshua G Jackson, Jacqueline M Barker
HIV infection is an ongoing global health issue despite increased access to antiretroviral therapy (ART). People living with HIV (PLWH) who are virally suppressed through ART still experience negative health outcomes, including neurocognitive impairment. It is increasingly evident that ART may act independently or in combination with HIV infection to alter immune state, though this is difficult to disentangle in the clinical population. Thus, these experiments used multiplexed chemokine/cytokine arrays to assess peripheral (plasma) and brain (nucleus accumbens; NAc) expression of immune targets in the presence and absence of ART treatment in the EcoHIV mouse model...
April 14, 2024: bioRxiv
https://read.qxmd.com/read/38643078/integrated-clinical-and-genomic-models-using-machine-learning-methods-to-predict-the-efficacy-of-paclitaxel-based-chemotherapy-in-patients-with-advanced-gastric-cancer
#9
JOURNAL ARTICLE
Yonghwa Choi, Jangwoo Lee, Keewon Shin, Ji Won Lee, Ju Won Kim, Soohyeon Lee, Yoon Ji Choi, Kyong Hwa Park, Jwa Hoon Kim
BACKGROUND: Paclitaxel is commonly used as a second-line therapy for advanced gastric cancer (AGC). The decision to proceed with second-line chemotherapy and select an appropriate regimen is critical for vulnerable patients with AGC progressing after first-line chemotherapy. However, no predictive biomarkers exist to identify patients with AGC who would benefit from paclitaxel-based chemotherapy. METHODS: This study included 288 patients with AGC receiving second-line paclitaxel-based chemotherapy between 2017 and 2022 as part of the K-MASTER project, a nationwide government-funded precision medicine initiative...
April 20, 2024: BMC Cancer
https://read.qxmd.com/read/38642704/a-deep-learning-approach-to-predict-bleeding-risk-over-time-in-patients-on-extended-anticoagulation-therapy
#10
JOURNAL ARTICLE
Soroush Shahryari Fard, Theodore J Perkins, Philip S Wells
BACKGROUND: Thus far, all the clinical models developed to predict major bleeding in patients on extended anticoagulation therapy use the baseline predictors to stratify patients into different risk groups. Therefore, these models do not account for the clinical changes and events that occur after the baseline visit, which can modify risk of bleeding. However, it is difficult to develop predictive models from the routine follow-up clinical interviews which are irregular sequences of multivariate time series data...
April 18, 2024: Journal of Thrombosis and Haemostasis: JTH
https://read.qxmd.com/read/38642500/prottrans-and-multi-window-scanning-convolutional-neural-networks-for-the-prediction-of-protein-peptide-interaction-sites
#11
JOURNAL ARTICLE
Van-The Le, Zi-Jun Zhan, Thi-Thu-Phuong Vu, Muhammad-Shahid Malik, Yu-Yen Ou
This study delves into the prediction of protein-peptide interactions using advanced machine learning techniques, comparing models such as sequence-based, standard CNNs, and traditional classifiers. Leveraging pre-trained language models and multi-view window scanning CNNs, our approach yields significant improvements, with ProtTrans standing out based on 2.1 billion protein sequences and 393 billion amino acids. The integrated model demonstrates remarkable performance, achieving an AUC of 0.856 and 0.823 on the PepBCL Set_1 and Set_2 datasets, respectively...
April 17, 2024: Journal of Molecular Graphics & Modelling
https://read.qxmd.com/read/38642491/exploratory-drug-discovery-in-breast-cancer-patients-a-multimodal-deep-learning-approach-to-identify-novel-drug-candidates-targeting-rtk-signaling
#12
JOURNAL ARTICLE
Anush Karampuri, Sunitha Kundur, Shyam Perugu
Breast cancer, a highly formidable and diverse malignancy predominantly affecting women globally, poses a significant threat due to its intricate genetic variability, rendering it challenging to diagnose accurately. Various therapies such as immunotherapy, radiotherapy, and diverse chemotherapy approaches like drug repurposing and combination therapy are widely used depending on cancer subtype and metastasis severity. Our study revolves around an innovative drug discovery strategy targeting potential drug candidates specific to RTK signalling, a prominently targeted receptor class in cancer...
April 16, 2024: Computers in Biology and Medicine
https://read.qxmd.com/read/38642238/underlying-neural-mechanisms-of-cognitive-improvement-in-fronto-striatal-response-inhibition-in-people-living-with-hiv-switching-off-efavirenz-a-randomized-controlled-bold-fmri-trial
#13
JOURNAL ARTICLE
Patrick G A Oomen, Charlotte S Hakkers, Joop E Arends, Guido E L van der Berk, Pascal Pas, Andy I M Hoepelman, Berend J van Welzen, Stefan du Plessis
INTRODUCTION: It is unclear whether neurotoxicity due to the antiretroviral drug efavirenz (EFV) results in neurocognitive impairment in people living with HIV (PLWH). Previously, we found that discontinuing EFV was associated with improved processing speed and attention on neuropsychological assessment. In this imaging study, we investigate potential neural mechanisms underlying this cognitive improvement using a BOLD fMRI task assessing cortical and subcortical functioning. METHODS: Asymptomatic adult PLWH stable on emtricitabine/tenofovirdisoproxil/efavirenz were randomly (1:2) assigned to continue their regimen (n = 12) or to switch to emtricitabine/tenofovirdisoproxil/rilpivirine (n = 28)...
April 20, 2024: Infectious Diseases and Therapy
https://read.qxmd.com/read/38640996/cpg-methylation-changes-in-human-mesenchymal-and-neural-stem-cells-in-response-to-in-vitro-niche-modifications
#14
JOURNAL ARTICLE
Martina Gyimesi, Lotta E Oikari, Chieh Yu, Heidi G Sutherland, Dale R Nyholt, Lyn R Griffiths, Andre J Van Wijnen, Rachel K Okolicsanyi, Larisa M Haupt
Stem cell therapies hold promise in addressing the burden of neurodegenerative diseases with human embryonic neural stem cells (hNSC-H9s) and bone marrow-derived human mesenchymal stem cells (hMSCs) as viable candidates. The induction of hMSC neurospheres (hMSC-IN) generate a more lineage-restricted common neural progenitor-like cell population, potentially tunable by heparan sulfate proteoglycans (HSPGs). We examined CpG (5mC) site methylation patterns using Illumina Infinium 850K EPIC arrays in hNSC-H9, hMSCs and hMSC-IN cultures with HSPG agonist heparin at early and late phases of growth...
April 17, 2024: Biochimie
https://read.qxmd.com/read/38638967/application-of-spinal-cord-fusion-in-spinal-cord-injury-repair-and-its-neurological-mechanism
#15
REVIEW
Tingting Shen, Weihua Zhang, Xiaogang Wang, Xiaoping Ren
Spinal cord injury (SCI) is a severely disabling and catastrophic condition that poses significant global clinical challenges. The difficulty of SCI repair results from the distinctive pathophysiological mechanisms, which are characterised by limited regenerative capacity and inadequate neuroplasticity of the spinal cord. Additionally, the formation of cystic cavities and astrocytic scars after SCI further obstructs both the ascending and descending neural conduction pathways. Consequently, the urgent challenge in post-SCI recovery lies in repairing the damaged spinal cord to reconstruct a functional and intact neural conduction circuit...
April 30, 2024: Heliyon
https://read.qxmd.com/read/38638453/data-mining-approaches-to-pneumothorax-detection-integrating-mask-rcnn-and-medical-transfer-learning-techniques
#16
JOURNAL ARTICLE
Shwetambari Chiwhane, Lalit Shrotriya, Amol Dhumane, Sonali Kothari, Deepak Dharrao, Pooja Bagane
With the medical condition of pneumothorax, also known as collapsed lung, air builds up in the pleural cavity and causes the lung to collapse. It is a critical disorder that needs to be identified and treated right as it can cause breathing difficulties, low blood oxygen levels, and, in extreme circumstances, death. Chest X-rays are frequently used to diagnose pneumothorax. Using the Mask R-CNN model and medical transfer learning, the proposed work offers•A novel method for pneumothorax segmentation from chest X-rays...
June 2024: MethodsX
https://read.qxmd.com/read/38638360/designing-for-usability-development-and-evaluation-of-a-portable-minimally-actuated-haptic-hand-and-forearm-trainer-for-unsupervised-stroke-rehabilitation
#17
JOURNAL ARTICLE
Raphael Rätz, Alexandre L Ratschat, Nerea Cividanes-Garcia, Gerard M Ribbers, Laura Marchal-Crespo
In stroke rehabilitation, simple robotic devices hold the potential to increase the training dosage in group therapies and to enable continued therapy at home after hospital discharge. However, we identified a lack of portable and cost-effective devices that not only focus on improving motor functions but also address sensory deficits. Thus, we designed a minimally-actuated hand training device that incorporates active grasping movements and passive pronosupination, complemented by a rehabilitative game with meaningful haptic feedback...
2024: Frontiers in Neurorobotics
https://read.qxmd.com/read/38638322/electrophysiological-and-morphological-modulation-of-neuronal-glial-network-by-breast-cancer-and-nontumorigenic-mammary-cell-conditioned-medium
#18
JOURNAL ARTICLE
Donatella Di Lisa, Katia Cortese, Michela Chiappalone, Pietro Arnaldi, Sergio Martinoia, Patrizio Castagnola, Laura Pastorino
Breast cancer is a significant global health concern, with the overexpression of human epidermal growth factor receptor 2 (HER2/ERBB2) being a driver oncogene in 20%-30% of cases. Indeed, HER2/ERBB2 plays a crucial role in regulating cell growth, differentiation, and survival via a complex signaling network. Overexpression of HER2/ERBB2 is associated with more aggressive behavior and increased risk of brain metastases, which remains a significant clinical challenge for treatment. Recent research has highlighted the role of breast cancer secretomes in promoting tumor progression, including excessive proliferation, immune invasion, and resistance to anti-cancer therapy, and their potential as cancer biomarkers...
2024: Frontiers in Bioengineering and Biotechnology
https://read.qxmd.com/read/38638299/abnormal-cell-sorting-and-altered-early-neurogenesis-in-a-human-cortical-organoid-model-of-protocadherin-19-clustering-epilepsy
#19
JOURNAL ARTICLE
Wei Niu, Lu Deng, Sandra P Mojica-Perez, Andrew M Tidball, Roksolana Sudyk, Kyle Stokes, Jack M Parent
INTRODUCTION: Protocadherin-19 ( PCDH19 )-Clustering Epilepsy (PCE) is a developmental and epileptic encephalopathy caused by loss-of-function variants of the PCDH19 gene on the X-chromosome. PCE affects females and mosaic males while male carriers are largely spared. Mosaic expression of the cell adhesion molecule PCDH19 due to random X-chromosome inactivation is thought to impair cell-cell interactions between mutant and wild type PCDH19 -expressing cells to produce the disease. Progress has been made in understanding PCE using rodent models or patient induced pluripotent stem cells (iPSCs)...
2024: Frontiers in Cellular Neuroscience
https://read.qxmd.com/read/38637896/transcriptomic-profiling-across-human-serotonin-neuron-differentiation-via-the-fev-reporter-system
#20
JOURNAL ARTICLE
Yingqi Li, Jinjin Duan, You Li, Meihui Zhang, Jiaan Wu, Guanhao Wang, Shuanqing Li, Zhangsen Hu, Yi Qu, Yunhe Li, Xiran Hu, Fei Guo, Lining Cao, Jianfeng Lu
BACKGROUND: The detailed transcriptomic profiles during human serotonin neuron (SN) differentiation remain elusive. The establishment of a reporter system based on SN terminal selector holds promise to produce highly-purified cells with an early serotonergic fate and help elucidate the molecular events during human SN development process. METHODS: A fifth Ewing variant (FEV)-EGFP reporter system was established by CRISPR/Cas9 technology to indicate SN since postmitotic stage...
April 19, 2024: Stem Cell Research & Therapy
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