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https://www.readbyqxmd.com/read/28231697/the-fecal-microbiota-composition-of-boar-duroc-yorkshire-landrace-and-hampshire-pigs
#1
Yingping Xiao, Kaifeng Li, Yun Xiang, Weidong Zhou, Guohong Gui, Hua Yang
To investigate the effect of host genetics on gut microbial diversity, we performed a structural survey of the fecal microbiota of four purebred boar pig lines: Duroc, Landrace, Hampshire and Yorkshire. The V3-V4 regions of the 16S rRNA genes were amplified and sequenced. A total of 783 OTUs were shared by all breeds, whereas other OTUs were breed-specific. Firmicutes and Bacteroidetes dominated the majority of the fecal microbiota; Clostridia, Bacilli and Bacteroidia were the major classes. Nine predominant genera were observed in all breeds and eight of them can produce short-chain fatty acids (SCFAs)...
February 23, 2017: Asian-Australasian Journal of Animal Sciences
https://www.readbyqxmd.com/read/28231536/lignin-derived-inhibition-of-monocomponent-cellulases-and-a-xylanase-in-the-hydrolysis-of-lignocellulosics
#2
Miriam Kellock, Jenni Rahikainen, Kaisa Marjamaa, Kristiina Kruus
Non-productive enzyme binding onto lignin is the major inhibitory mechanism, which reduces hydrolysis rates and yields and prevents efficient enzyme recycling in the hydrolysis of lignocellulosics. The detailed mechanisms of binding are still poorly understood. Enzyme-lignin interactions were investigated by comparing the structural properties and binding behaviour of fungal monocomponent enzymes, cellobiohydrolases TrCel7A and TrCel6A, endoglucanases TrCel7B and TrCel5A, a xylanase TrXyn11 and a β-glucosidase AnCel3A, onto lignins isolated from steam pretreated spruce and wheat straw...
February 11, 2017: Bioresource Technology
https://www.readbyqxmd.com/read/28229208/trichoderma-reesei-xylanase-5-is-defective-in-the-reference-strain-qm6a-but-functional-alleles-are-present-in-other-wild-type-strains
#3
Jonas Ramoni, Martina Marchetti-Deschmann, Verena Seidl-Seiboth, Bernhard Seiboth
Trichoderma reesei is a paradigm for the regulation and industrial production of plant cell wall-degrading enzymes. Among these, five xylanases, including the glycoside hydrolase (GH) family 11 XYN1 and XYN2, the GH10 XYN3, and the GH30 XYN4 and XYN6, were described. By genome mining and transcriptome analysis, a further putative xylanase, encoded by xyn5, was identified. Analysis of xyn5 from the genome-sequenced reference strain T. reesei QM6a shows that it encodes a non-functional, truncated form of XYN5...
February 22, 2017: Applied Microbiology and Biotechnology
https://www.readbyqxmd.com/read/28228093/comparative-profiling-of-hepatopancreas-transcriptomes-in-satiated-and-starving-pomacea-canaliculata
#4
Lei Yang, Tian-Yin Cheng, Fei-Yan Zhao
BACKGROUND: Although Pomacea canaliculata is native to South and Central America, it has become one of the most abundant invasive species worldwide and causes extensive damage to agriculture and horticulture. Conventional physical and chemical techniques have been used to eliminate P. canaliculata, but the effects are not ideal. Therefore, it is important to devise a new method based on a greater understanding of the biology of P. canaliculata. However, the molecular mechanisms underlying digestion and absorption in P...
February 22, 2017: BMC Genetics
https://www.readbyqxmd.com/read/28224723/synthetic-extreme-environments-overlooked-sources-of-potential-biotechnologically-relevant-microorganisms
#5
Timothy Sibanda, Ramganesh Selvarajan, Memory Tekere
Synthetic extreme environments like carwash effluent tanks and drains are potential sources of biotechnologically important microorganisms and molecules which have, however, remained unexplored. Using culture- and molecular-based methods, a total of 17 bacterial isolates belonging to the genera Shewanella, Proteus, Paenibacillus, Enterobacter and Citrobacter, Aeromonas, Pseudomonas and Pantoea were identified. Hydrocarbon utilization and enzyme production screening assays showed that Aeromonas sp. CAC11, Paenibacillus sp...
February 22, 2017: Microbial Biotechnology
https://www.readbyqxmd.com/read/28210251/functional-studies-of-%C3%AE-glucosidases-of-cytophaga-hutchinsonii-and-their-effects-on-cellulose-degradation
#6
Xinfeng Bai, Xifeng Wang, Sen Wang, Xiaofei Ji, Zhiwei Guan, Weican Zhang, Xuemei Lu
Cytophaga hutchinsonii can rapidly digest crystalline cellulose without free cellulases or cellulosomes. Its cell-contact cellulose degradation mechanism is unknown. In this study, the four β-glucosidase (bgl) genes in C. hutchinsonii were singly and multiply deleted, and the functions of these β-glucosidases in cellobiose and cellulose degradation were investigated. We found that the constitutively expressed BglB played a key role in cellobiose utilization, while BglA which was induced by cellobiose could partially make up for the deletion of bglB...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28208644/novel-magnetic-cross-linked-cellulase-aggregates-with-a-potential-application-in-lignocellulosic-biomass-bioconversion
#7
Junqi Jia, Weiwei Zhang, Zengjie Yang, Xianling Yang, Na Wang, Xiaoqi Yu
The utilization of renewable biomass resources to produce high-value chemicals by enzymatic processes is beneficial for alternative energy production, due to the accelerating depletion of fossil fuels. As immobilization techniques can improve enzyme stability and reusability, a novel magnetic cross-linked cellulase aggregate has been developed and applied for biomass bioconversion. The crosslinked aggregates could purify and immobilize enzymes in a single operation, and could then be combined with magnetic nanoparticles (MNPs), which provides easy separation of the materials...
February 10, 2017: Molecules: a Journal of Synthetic Chemistry and Natural Product Chemistry
https://www.readbyqxmd.com/read/28204815/enzyme-treated-ecklonia-cava-extract-inhibits-adipogenesis-through-the-downregulation-of-c-ebp%C3%AE-in-3t3-l1-adipocytes
#8
In-Hye Kim, Taek-Jeong Nam
In this study, we examined the inhibitory effects of enzyme- treated Ecklonia cava (EEc) extract on the adipogenesis of 3T3-L1 adipocytes. The components of Ecklonia cava (E. cava) were first separated and purified using the digestive enzymes pectinase (Rapidase® X‑Press L) and cellulase (Rohament® CL). We found that the EEc extract contained three distinct phlorotannins: eckol, dieckol and phlorofucofuroeckol-A. Among the phlorotannins, dieckol was the most abundant in the EEc extract at 16 mg/g. Then we examined the inhibitory effects of EEc extract treatment on differentiation‑related transcription factors and on adipogenesis‑related gene expression in vitro using 3T3-L1 adipocytes...
March 2017: International Journal of Molecular Medicine
https://www.readbyqxmd.com/read/28202307/influence-of-rice-straw-polyphenols-on-cellulase-production-by-trichoderma-reesei
#9
Wei Zheng, Qin Zheng, Yiyun Xue, Jiajun Hu, Min-Tian Gao
In this study, we found that during cellulase production by Trichoderma reesei large amounts of polyphenols were released from rice straw when the latter was used as the carbon source. We identified and quantified the phenolic compounds in rice straw and investigated the effects of the phenolic compounds on cellulase production by T. reesei. The phenolic compounds of rice straw mainly consisted of phenolic acids and tannins. Coumaric acid (CA) and ferulic acid (FA) were the predominant phenolic acids, which inhibited cellulase production by T...
February 12, 2017: Journal of Bioscience and Bioengineering
https://www.readbyqxmd.com/read/28198423/discovery-of-genes-coding-for-carbohydrate-active-enzyme-by-metagenomic-analysis-of-lignocellulosic-biomasses
#10
Salvatore Montella, Valeria Ventorino, Vincent Lombard, Bernard Henrissat, Olimpia Pepe, Vincenza Faraco
In this study, a high-throughput sequencing approach was applied to discover novel biocatalysts for lignocellulose hydrolysis from three dedicated energy crops, Arundo donax, Eucalyptus camaldulensis and Populus nigra, after natural biodegradation. The microbiomes of the three lignocellulosic biomasses were dominated by bacterial species (approximately 90%) with the highest representation by the Streptomyces genus both in the total microbial community composition and in the microbial diversity related to GH families of predicted ORFs...
February 15, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28197730/mechanisms-of-the-inhibition-of-enzymatic-hydrolysis-of-waste-pulp-fibers-by-calcium-carbonate-and-the-influence-of-nonionic-surfactant-for-mitigation
#11
Byeong Cheol Min, Bandaru V Ramarao
Recycled paper mills produce large quantities of fibrous rejects and fines which are usually sent to landfills as solid waste. These cellulosic materials can be enzymatically hydrolyzed into sugars for the production of biofuels and biomaterials. Paper mill wastes also contain large amounts of calcium carbonate which inhibits cellulase activity. The calcium carbonate (30%, w/w) decreased 40-60% of sugar yield of unbleached softwood kraft pulp. The prime mechanisms for this are by pH variation, competitive and non-productive binding, and aggregation effect...
February 14, 2017: Bioprocess and Biosystems Engineering
https://www.readbyqxmd.com/read/28197689/influence-of-straw-incorporation-with-and-without-straw-decomposer-on-soil-bacterial-community-structure-and-function-in-a-rice-wheat-cropping-system
#12
Jun Zhao, Tian Ni, Weibing Xun, Xiaolei Huang, Qiwei Huang, Wei Ran, Biao Shen, Ruifu Zhang, Qirong Shen
To study the influence of straw incorporation with and without straw decomposer on bacterial community structure and biological traits, a 3-year field experiments, including four treatments: control without fertilizer (CK), chemical fertilizer (NPK), chemical fertilizer plus 7500 kg ha(-1) straw incorporation (NPKS), and chemical fertilizer plus 7500 kg ha(-1) straw incorporation and 300 kg ha(-1) straw decomposer (NPKSD), were performed in a rice-wheat cropping system in Changshu (CS) and Jintan (JT) city, respectively...
February 14, 2017: Applied Microbiology and Biotechnology
https://www.readbyqxmd.com/read/28197688/functional-diversity-for-biomass-deconstruction-in-family-5-subfamily-5-gh5_5-of-fungal-endo-%C3%AE-1-4-glucanases
#13
Bingyao Li, Jonathan D Walton
Endo-β1,4-glucanases in glycosyl hydrolase family 5 (GH5) are ubiquitous enzymes in the multicellular fungi and are common components of enzyme cocktails for biomass conversion. We recently showed that an endo-glucanase of subfamily 5 of GH5 (GH5_5) from Sporotrichum thermophile (StCel5A) was more effective at releasing glucose from pretreated corn stover, when part of an eight-component synthetic enzyme mixture, compared to its closely related counterpart from Trichoderma reesei, TrCel5A. StCel5A and TrCel5A belong to different clades of GH5_5 (GH5_5_1 and GH5_5_2, respectively)...
February 14, 2017: Applied Microbiology and Biotechnology
https://www.readbyqxmd.com/read/28197133/metatranscriptomics-reveals-the-active-bacterial-and-eukaryotic-fibrolytic-communities-in-the-rumen-of-dairy-cow-fed-a-mixed-diet
#14
Sophie Comtet-Marre, Nicolas Parisot, Pascale Lepercq, Frédérique Chaucheyras-Durand, Pascale Mosoni, Eric Peyretaillade, Ali R Bayat, Kevin J Shingfield, Pierre Peyret, Evelyne Forano
Ruminants have a unique ability to derive energy from the degradation of plant polysaccharides through the activity of the rumen microbiota. Although this process is well studied in vitro, knowledge gaps remain regarding the relative contribution of the microbiota members and enzymes in vivo. The present study used RNA-sequencing to reveal both the expression of genes encoding carbohydrate-active enzymes (CAZymes) by the rumen microbiota of a lactating dairy cow and the microorganisms forming the fiber-degrading community...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28193479/effects-of-substrate-ant-and-fungal-species-on-plant-fiber-degradation-in-a-fungus-gardening-ant-symbiosis
#15
Alexandria M DeMilto, Monte Rouquette, Ulrich G Mueller, Katrin Kellner, Jon N Seal
Fungus-gardening or attine ants have outsourced most of their digestive function to a symbiotic fungus. The ants feed their fungus - essentially an external digestive organ - a variety of substrates of botanical origin, including fresh and dried flowers, leaves and insect frass (processed leaves). Although plant tissues are rich in fibers (lignocelluloses, hemicelluloses, pectins and starches) and the symbiotic fungus possesses the genetic and enzymatic machinery to metabolize these compounds, the highly derived attines, the leaf-cutters (Atta and Acromyrmex), are known to produce fiber-rich waste...
February 11, 2017: Journal of Insect Physiology
https://www.readbyqxmd.com/read/28193328/engineering-neurospora-crassa-for-cellobionate-production-directly-from-cellulose-without-any-enzyme-addition
#16
Hui Lin, Amanda Hildebrand, Takao Kasuga, Zhiliang Fan
In a cellulosic biorefinery, the cellulase enzymes needed for hydrolysis are one of the major contributors to high processing costs, while the hydrolysis product, cellobiose, has strong inhibition to the cellulases. In this study, we report engineering recombinant Neurospora crassa strains which are able to produce cellobionate, an organic acid, from cellulose without any enzyme addition. Recombinant strains were constructed by heterologously expressing laccase genes from different sources under different promoters in N...
April 2017: Enzyme and Microbial Technology
https://www.readbyqxmd.com/read/28192217/the-relation-between-xyr1-overexpression-in-trichoderma-harzianum-and-sugarcane-bagasse-saccharification-performance
#17
Priscila da Silva Delabona, Gisele Nunes Rodrigues, Mariane Paludetti Zubieta, Jonas Ramoni, Carla Aloia Codima, Deise Juliana Lima, Cristiane Sanchez Farinas, José Geraldo da Cruz Pradella, Bernhard Seiboth
This work investigates the influence of the positive regulator XYR1 of Trichoderma harzianum on the production of cellulolytic enzymes, using sugarcane bagasse as carbon source. Constitutive expression of xyr1 was achieved under the control of the strong Trichoderma reesei pki1 promoter. Five clones with xyr1 overexpression achieved higher xyr1 expression and greater enzymatic productivity when cultivated under submerged fermentation, hence validating the genetic construction for T. harzianum. Clone 5 presented a relative expression of xyr1 26-fold higher than the parent strain and exhibited 66, 37, and 36% higher values for filter paper activity, xylanase activity, and β-glucosidase activity, respectively, during cultivation in a stirred-tank bioreactor...
February 9, 2017: Journal of Biotechnology
https://www.readbyqxmd.com/read/28191037/understanding-the-structural-and-chemical-changes-of-plant-biomass-following-steam-explosion-pretreatment
#18
Thomas Auxenfans, David Crônier, Brigitte Chabbert, Gabriel Paës
BACKGROUND: Biorefining of lignocellulosic biomass has become one of the most valuable alternatives for the production of multi-products such as biofuels. Pretreatment is a prerequisite to increase the enzymatic conversion of the recalcitrant lignocellulose. However, there is still considerable debate regarding the key features of biomass impacting the cellulase accessibility. In this study, we evaluate the structural and chemical features of three different representative biomasses (Miscanthus × giganteus, poplar and wheat straw), before and after steam explosion pretreatment at increasing severities, by monitoring chemical analysis, SEM, FTIR and 2D NMR...
2017: Biotechnology for Biofuels
https://www.readbyqxmd.com/read/28187376/genome-wide-analysis-of-excretory-secretory-proteins-in-root-knot-nematode-meloidogyne-incognita-provides-potential-targets-for-parasite-control
#19
Shachi Gahoi, Budhayash Gautam
The root-knot nematode, Meloidogyne incognita causes significant damage to various economically important crops. Infection is associated with secretion of effector proteins into host cytoplasm and interference with host innate immunity. To combat this infection, the identification and functional annotations of Excretory/Secretory (ES) proteins serve as a key to produce durable control measures. The identification of ES proteins through experimental methods are expensive and time consuming while bioinformatics approaches are cost-effective by prioritizing the experimental analysis of potential drug targets for parasitic diseases...
February 1, 2017: Computational Biology and Chemistry
https://www.readbyqxmd.com/read/28184247/a-versatile-2a-peptide-based-bicistronic-protein-expressing-platform-for-the-industrial-cellulase-producing-fungus-trichoderma-reesei
#20
Venkataramanan Subramanian, Logan A Schuster, Kyle T Moore, Larry E Taylor, John O Baker, Todd A Vander Wall, Jeffrey G Linger, Michael E Himmel, Stephen R Decker
BACKGROUND: The industrial workhorse fungus, Trichoderma reesei, is typically exploited for its ability to produce cellulase enzymes, whereas use of this fungus for over-expression of other proteins (homologous and heterologous) is still very limited. Identifying transformants expressing target protein is a tedious task due to low transformation efficiency, combined with highly variable expression levels between transformants. Routine methods for identification include PCR-based analysis, western blotting, or crude activity screening, all of which are time-consuming techniques...
2017: Biotechnology for Biofuels
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