keyword
https://read.qxmd.com/read/38718436/pan-cancer-analysis-of-super-enhancer-induced-linc00862-and-validation-as-a-sirt1-promoting-factor-in-cervical-cancer-and-gastric-cancer
#1
JOURNAL ARTICLE
Shaojun Liu, Zhaohui Wang, Lei Hu, Chao Ye, Xubin Zhang, Zhiqiang Zhu, Jiaqiu Li, Qi Shen
Immune checkpoints inhibitors are effective but it needs more precise biomarkers for patient selection. We explored the biological significance of LINC00862 in pan-cancer by bioinformatics. And we studied its regulatory mechanisms using chromatin immunoprecipitation and RNA immunoprecipitation assays etc. TCGA and single-cell sequencing data analysis indicated that LINC00862 was overexpressed in the majority of tumor and stromal cells, which was related with poor prognosis. LINC00862 expression was related with immune cell infiltration and immune checkpoints expression, and had a high predictive value for immunotherapy efficacy...
May 7, 2024: Translational Oncology
https://read.qxmd.com/read/38717632/oxidative-dna-damage-promotes-vascular-aging-associated-with-changes-in-extracellular-matrix-regulating-proteins
#2
JOURNAL ARTICLE
Kirsty Foote, Marieke Rienks, Lukas Schmidt, Konstantinos Theofilatos, Yasmin, Matiss Ozols, Alexander Eckersley, Aarti Shah, Nichola Figg, Alison Finigan, Kevin O'Shaughnessy, Ian B Wilkinson, Manuel Mayr, Martin Bennett
AIMS: Vascular aging is characterized by vessel stiffening, with increased deposition of extracellular matrix (ECM) proteins including collagens. Oxidative DNA damage occurs in vascular aging, but how it regulates ECM proteins and vascular stiffening is unknown. We sought to determine the relationship between oxidative DNA damage and ECM regulatory proteins in vascular aging. METHODS AND RESULTS: We examined oxidative DNA damage, the major base excision repair (BER) enzyme 8-Oxoguanine DNA Glycosylase (Ogg1) and its regulators, multiple physiological markers of aging, and ECM proteomics in mice from 22-72w...
May 8, 2024: Cardiovascular Research
https://read.qxmd.com/read/38713969/channel-reflection-knowledge-driven-data-augmentation-for-eeg-based-brain-computer-interfaces
#3
JOURNAL ARTICLE
Ziwei Wang, Siyang Li, Jingwei Luo, Jiajing Liu, Dongrui Wu
A brain-computer interface (BCI) enables direct communication between the human brain and external devices. Electroencephalography (EEG) based BCIs are currently the most popular for able-bodied users. To increase user-friendliness, usually a small amount of user-specific EEG data are used for calibration, which may not be enough to develop a pure data-driven decoding model. To cope with this typical calibration data shortage challenge in EEG-based BCIs, this paper proposes a parameter-free channel reflection (CR) data augmentation approach that incorporates prior knowledge on the channel distributions of different BCI paradigms in data augmentation...
April 29, 2024: Neural Networks: the Official Journal of the International Neural Network Society
https://read.qxmd.com/read/38712292/cbp-p300-brd-inhibition-reduces-neutrophil-accumulation-and-activates-antitumor-immunity-in-tnbc
#4
Xueying Yuan, Xiaoxin Hao, Hilda L Chan, Na Zhao, Diego A Pedroza, Fengshuo Liu, Kang Le, Alex J Smith, Sebastian J Calderon, Nadia Lieu, Michael J Soth, Philip Jones, Xiang H-F Zhang, Jeffrey M Rosen
UNLABELLED: Tumor-associated neutrophils (TANs) have been shown to promote immunosuppression and tumor progression, and a high TAN frequency predicts poor prognosis in triple-negative breast cancer (TNBC). Dysregulation of CREB binding protein (CBP)/P300 function has been observed with multiple cancer types. The bromodomain (BRD) of CBP/P300 has been shown to regulate its activity. In this study, we found that IACS-70654, a novel and selective CBP/P300 BRD inhibitor, reduced TANs and inhibited the growth of neutrophil-enriched TNBC models...
April 27, 2024: bioRxiv
https://read.qxmd.com/read/38711083/positive-feedback-regulation-between-glycolysis-and-histone-lactylation-drives-oncogenesis-in-pancreatic-ductal-adenocarcinoma
#5
JOURNAL ARTICLE
Fei Li, Wenzhe Si, Li Xia, Deshan Yin, Tianjiao Wei, Ming Tao, Xiaona Cui, Jin Yang, Tianpei Hong, Rui Wei
BACKGROUND: Metabolic reprogramming and epigenetic alterations contribute to the aggressiveness of pancreatic ductal adenocarcinoma (PDAC). Lactate-dependent histone modification is a new type of histone mark, which links glycolysis metabolite to the epigenetic process of lactylation. However, the role of histone lactylation in PDAC remains unclear. METHODS: The level of histone lactylation in PDAC was identified by western blot and immunohistochemistry, and its relationship with the overall survival was evaluated using a Kaplan-Meier survival plot...
May 6, 2024: Molecular Cancer
https://read.qxmd.com/read/38709464/cogn%C3%A4-t%C3%A4-ve-funct%C3%A4-ons-in-idiopathic-intracranial-hypertens%C3%A4-on
#6
JOURNAL ARTICLE
Ayşın Kısabay Ak, Aysegül Seyma Sarıtas, Melike Batum, Yagmur Inalkac Gemici, Burak Karakaş, Neşe Çelebisoy
OBJECTIVE: Cognitive problems in idiopathic intracranial hypertension (IIH) is generally overlooked in the presence of disabling headache and threat to visual function. The aim of this study was to search for cognitive deficits in patients with IIH using neuropsychologic tests in addition to P300 potential recordings to assess cognition related brain activity. METHODS: Fifty IIH patients were examined using Montreal Cognitive Assessment Test, Stroop Test and Visual Aural Digit Span Test to measure different domains of cognition at the time of diagnosis...
May 6, 2024: Acta Neurologica Belgica
https://read.qxmd.com/read/38707352/effects-of-parietal-repetitive-transcranial-magnetic-stimulation-in-prolonged-disorders-of-consciousness-a-pilot-study
#7
JOURNAL ARTICLE
Xiaoping Wan, Ye Zhang, Yanhua Li, Weiqun Song
OBJECTIVE: Although the parietal cortex is related to consciousness, the dorsolateral prefrontal and primary motor cortices are the usual targets for repetitive transcranial magnetic stimulation (rTMS) for prolonged disorders of consciousness (pDoC). Herein, we applied parietal rTMS to patients with pDoC, to verify its neurobehavioral effects and explore a new potential rTMS target. MATERIALS AND METHODS: Twenty-six patients with pDoC were assigned to a rTMS or sham group...
May 15, 2024: Heliyon
https://read.qxmd.com/read/38704700/the-long-non-coding-rna-obesity-related-obr-contributes-to-lipid-metabolism-through-epigenetic-regulation
#8
JOURNAL ARTICLE
Suneesh Kaimala, Shareena Saeed Lootah, Neha Mehra, Challagandla Anil Kumar, Saeeda Al Marzooqi, Prabha Sampath, Suraiya Anjum Ansari, Bright Starling Emerald
Obesity is a multifactorial disease that is part of today's epidemic and also increases the risk of other metabolic diseases. Long noncoding RNAs (lncRNAs) provide one tier of regulatory mechanisms to maintain metabolic homeostasis. Although lncRNAs are a significant constituent of the mammalian genome, studies aimed at their metabolic significance, including obesity, are only beginning to be addressed. Here, a developmentally regulated lncRNA, termed as obesity related (Obr), whose expression in metabolically relevant tissues such as skeletal muscle, liver, and pancreas is altered in diet-induced obesity, is identified...
May 5, 2024: Advanced Science (Weinheim, Baden-Wurttemberg, Germany)
https://read.qxmd.com/read/38702194/unsupervised-characterization-of-prediction-error-markers-in-unisensory-and-multisensory-streams-reveal-the-spatiotemporal-hierarchy-of-cortical-information-processing
#9
JOURNAL ARTICLE
Priyanka Ghosh, Siddharth Talwar, Arpan Banerjee
Elicited upon violation of regularity in stimulus presentation, mismatch negativity (MMN) reflects the brain's ability to perform automatic comparisons between consecutive stimuli and provides an electrophysiological index of sensory error detection whereas P300 is associated with cognitive processes such as updating of the working memory. To date, there has been extensive research on the roles of MMN and P300 individually, because of their potential to be used as clinical markers of consciousness and attention, respectively...
May 2024: ENeuro
https://read.qxmd.com/read/38701899/neural-mechanisms-of-chinese-character-recognition-updating-and-maintenance-in-the-n-back-task
#10
JOURNAL ARTICLE
Hongli Li, Jianru Feng, Xiaoxuan Shi, Xin Zhao
Using the N-back task, we investigated how memory load influences the neural activity of the Chinese character cognitive subprocess (recognition, updating, and maintenance) in Mainland Chinese speakers. Twenty-seven participants completed the Chinese character N-back paradigm while having their event-related potentials recorded. The study employed time and frequency domain analyses of EEG data. Results showed that accuracy decreased and response times increased with larger N values. For ERPs, N2pc and P300 amplitudes decreased and SW amplitude increased with larger N values...
May 1, 2024: International Journal of Psychophysiology
https://read.qxmd.com/read/38699605/eeg-frm-a-neural-network-based-familiar-and-unfamiliar-face-eeg-recognition-method
#11
JOURNAL ARTICLE
Chao Chen, Lingfeng Fan, Ying Gao, Shuang Qiu, Wei Wei, Huiguang He
Recognizing familiar faces holds great value in various fields such as medicine, criminal investigation, and lie detection. In this paper, we designed a Complex Trial Protocol-based familiar and unfamiliar face recognition experiment that using self-face information, and collected EEG data from 147 subjects. A novel neural network-based method, the EEG-based Face Recognition Model (EEG-FRM), is proposed in this paper for cross-subject familiar/unfamiliar face recognition, which combines a multi-scale convolutional classification network with the maximum probability mechanism to realize individual face recognition...
April 2024: Cognitive Neurodynamics
https://read.qxmd.com/read/38691868/ep300-through-upregulating-the-expression-of-vimentin-to-promote-the-progression-of-chordoma
#12
JOURNAL ARTICLE
Lingzhi Wen, Bin Xie, Hui Li, Jun Huang, Ying Shi, Yongguang Tao, Yuanbing Chen
OBJECTIVE: There is a lack of effective drugs to treat the progression and recurrence of chordoma, which is widely resistant to treatment in chemotherapy. The authors investigated the functional and therapeutic relevance of the E1A-binding protein p300 (EP300) in chordoma. METHODS: The expression of EP300 and vimentin was examined in specimens from 9 patients with primary and recurrent chordoma with immunohistochemistry. The biological functions of EP300 were evaluated with Cell Counting Kit-8, clonogenic assays, and transwell assays...
May 2024: Neurosurgical Focus
https://read.qxmd.com/read/38689856/midfrontal-conflict-theta-and-parietal-p300-are-linked-to-a-latent-factor-of-dsm-externalising-disorders
#13
JOURNAL ARTICLE
Phoebe S-H Neo, Neil McNaughton, Martin Sellbom
Psychiatric illnesses form spectra rather than categories, with symptoms varying continuously across individuals, i.e., there is no clear break between health and disorder. Dimensional measures of behaviour and brain activity are promising targets for studying biological mechanisms that are common across disorders. Here, we assessed the extent to which neural measures of the sensitivity of the three biological systems in the reinforcement sensitivity theory (RST) could account for individual differences in a latent general factor estimated from symptom counts across externalising disorders (EXTs)...
2024: Personality Neuroscience
https://read.qxmd.com/read/38688262/semantic-image-sorting-method-for-rsvp-presentation
#14
JOURNAL ARTICLE
Hao Wu, Fu Li, Wenlong Chu, Yang Li, Yi Niu, Guangming Shi, Lijian Zhang, Yuanfang Chen
The rapid serial visual presentation (RSVP) paradigm, which is based on the electroencephalogram (EEG) technology, is an effective approach for object detection. It aims to detect the event-related potentials (ERP) components evoked by target images for rapid identification. However, the object detection performance within this paradigm is affected by the visual disparity between adjacent images in a sequence. Currently, there is no objective metric to quantify this visual difference. Consequently, a reliable image sorting method is required to ensure the generation of a smooth sequence for effective presentation...
April 30, 2024: Journal of Neural Engineering
https://read.qxmd.com/read/38686580/spatiotemporal-atf3-expression-determines-vsmc-fate-in-abdominal-aortic-aneurysm
#15
JOURNAL ARTICLE
Ying Wen, Yingying Liu, Qiang Li, Jinlin Tan, Xing Fu, Yiwen Liang, Yonghua Tuo, Luhao Liu, Xueqiong Zhou, Dongkai LiuFu, Xuejiao Fan, Chaofei Chen, Zheng Chen, Zhouping Wang, Shunyang Fan, Renjing Liu, Lei Pan, Yuan Zhang, Wai Ho Tang
BACKGROUND: Abdominal aortic aneurysm (AAA) is a catastrophic disease with little effective therapy, likely due to the limited understanding of the mechanisms underlying AAA development and progression. Activating transcription factor (ATF) 3 has been increasingly recognized as a key regulator of cardiovascular diseases. However, the role of ATF3 (activating transcription factor 3) in AAA development and progression remains elusive. METHODS: Genome-wide RNA sequencing analysis was performed on the aorta isolated from saline or Ang II (angiotensin II)-induced AAA mice, and ATF3 was identified as the potential key gene for AAA development...
April 30, 2024: Circulation Research
https://read.qxmd.com/read/38686423/-a-review-on-electroencephalogram-based-channel-selection
#16
REVIEW
Xiangzhe Li, Dan Wang, Baiwen Zhang, Chaojie Fan, Jiaming Chen, Meng Xu, Yuanfang Chen
The electroencephalogram (EEG) signal is the key signal carrier of the brain-computer interface (BCI) system. The EEG data collected by the whole-brain electrode arrangement is conducive to obtaining higher information representation. Personalized electrode layout, while ensuring the accuracy of EEG signal decoding, can also shorten the calibration time of BCI and has become an important research direction. This paper reviews the EEG signal channel selection methods in recent years, conducts a comparative analysis of the combined effects of different channel selection methods and different classification algorithms, obtains the commonly used channel combinations in motor imagery, P300 and other paradigms in BCI, and explains the application scenarios of the channel selection method in different paradigms are discussed, in order to provide stronger support for a more accurate and portable BCI system...
April 25, 2024: Sheng Wu Yi Xue Gong Cheng Xue za Zhi, Journal of Biomedical Engineering, Shengwu Yixue Gongchengxue Zazhi
https://read.qxmd.com/read/38681279/a-comprehensive-review-and-practical-guide-of-the-applications-of-evoked-potentials-in-neuroprognostication-after-cardiac-arrest
#17
REVIEW
Eduard Portell Penadés, Vincent Alvarez
Cardiorespiratory arrest is a very common cause of morbidity and mortality nowadays, and many therapeutic strategies, such as induced coma or targeted temperature management, are used to reduce patient sequelae. However, these procedures can alter a patient's neurological status, making it difficult to obtain useful clinical information for the reliable estimation of neurological prognosis. Therefore, complementary investigations are conducted in the early stages after a cardiac arrest to clarify functional prognosis in comatose cardiac arrest survivors in the first few hours or days...
March 2024: Curēus
https://read.qxmd.com/read/38679071/nucleolin-lactylation-contributes-to-intrahepatic-cholangiocarcinoma-pathogenesis-via-rna-splicing-regulation-of-madd
#18
JOURNAL ARTICLE
Long Yang, Kunwei Niu, Jianlin Wang, Weiwei Shen, Rui Jiang, Lu Liu, Wenjie Song, Xudan Wang, Xuan Zhang, Ruohan Zhang, Dan Wei, Ming Fan, Lintao Jia, Kaishan Tao
BACKGROUND & AIMS: Intrahepatic cholangiocarcinoma (iCCA) is a fatal malignancy of the biliary system. The lack of a detailed understanding of oncogenic signaling or global gene expression alterations has impeded clinical iCCA diagnosis and therapy. The role of protein lactylation, a newly unraveled post-translational modification that orchestrates gene expression, remains largely elusive in the pathogenesis of iCCA. METHODS: Proteomics analysis of clinical iCCA specimens and adjacent tissues was performed to screen for proteins aberrantly lactylated in iCCA...
April 26, 2024: Journal of Hepatology
https://read.qxmd.com/read/38678065/prediction-error-dependent-processing-of-immediate-and-delayed-positive-feedback
#19
JOURNAL ARTICLE
Constanze Weber, Christian Bellebaum
Learning often involves trial-and-error, i.e. repeating behaviours that lead to desired outcomes, and adjusting behaviour when outcomes do not meet our expectations and thus lead to prediction errors (PEs). PEs have been shown to be reflected in the reward positivity (RewP), an event-related potential (ERP) component between 200 and 350 ms after performance feedback which is linked to striatal processing and assessed via electroencephalography (EEG). Here we show that this is also true for delayed feedback processing, for which a critical role of the hippocampus has been suggested...
April 27, 2024: Scientific Reports
https://read.qxmd.com/read/38678032/the-prb-rbl2-e2f1-4-gcn5-axis-regulates-cancer-stem-cell-formation-and-g0-phase-entry-exit-by-paracrine-mechanisms
#20
JOURNAL ARTICLE
Chao-Hui Chang, Feng Liu, Stefania Militi, Svenja Hester, Reshma Nibhani, Siwei Deng, James Dunford, Aniko Rendek, Zahir Soonawalla, Roman Fischer, Udo Oppermann, Siim Pauklin
The lethality, chemoresistance and metastatic characteristics of cancers are associated with phenotypically plastic cancer stem cells (CSCs). How the non-cell autonomous signalling pathways and cell-autonomous transcriptional machinery orchestrate the stem cell-like characteristics of CSCs is still poorly understood. Here we use a quantitative proteomic approach for identifying secreted proteins of CSCs in pancreatic cancer. We uncover that the cell-autonomous E2F1/4-pRb/RBL2 axis balances non-cell-autonomous signalling in healthy ductal cells but becomes deregulated upon KRAS mutation...
April 27, 2024: Nature Communications
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