keyword
https://read.qxmd.com/read/37538397/identification-and-characterization-of-putative-biomarkers-and-therapeutic-axis-in-glioblastoma-multiforme-microenvironment
#21
JOURNAL ARTICLE
Smita Kumari, Pravir Kumar
Non-cellular secretory components, including chemokines, cytokines, and growth factors in the tumor microenvironment, are often dysregulated, impacting tumorigenesis in Glioblastoma multiforme (GBM) microenvironment, where the prognostic significance of the current treatment remains unsatisfactory. Recent studies have demonstrated the potential of post-translational modifications (PTM) and their respective enzymes, such as acetylation and ubiquitination in GBM etiology through modulating signaling events. However, the relationship between non-cellular secretory components and post-translational modifications will create a research void in GBM therapeutics...
2023: Frontiers in Cell and Developmental Biology
https://read.qxmd.com/read/37414855/molecular-determinants-of-epithelial-mesenchymal-transition-in-mouse-placenta-and-trophoblast-stem-cell
#22
JOURNAL ARTICLE
Shipra Kanti Jena, Shreya Das, Shreeta Chakraborty, Rupasri Ain
Trophectoderm cells of the blastocyst are the precursor of the placenta that is comprised of trophoblast, endothelial and smooth muscle cells. Since trophoectoderm cells are epithelial in nature, epithelial mesenchymal transition (EMT) of trophoblast stem (TS) cells might play pivotal role in placental morphogenesis. However, the molecular regulation of EMT during placental development and trophoblast differentiation still remained elusive. In this report, we sought to identify the molecular signature that regulates EMT during placental development and TS cell differentiation in mice...
July 6, 2023: Scientific Reports
https://read.qxmd.com/read/37373151/reviewing-the-regulators-of-col1a1
#23
REVIEW
Hanne Devos, Jerome Zoidakis, Maria G Roubelakis, Agnieszka Latosinska, Antonia Vlahou
The collagen family contains 28 proteins, predominantly expressed in the extracellular matrix (ECM) and characterized by a triple-helix structure. Collagens undergo several maturation steps, including post-translational modifications (PTMs) and cross-linking. These proteins are associated with multiple diseases, the most pronounced of which are fibrosis and bone diseases. This review focuses on the most abundant ECM protein highly implicated in disease, type I collagen (collagen I), in particular on its predominant chain collagen type I alpha 1 (COLα1 (I))...
June 11, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/37338142/o-fucosylation-of-bmp1-promotes-endometrial-decidualization-by-activating-bmp-smad-signaling-pathway
#24
JOURNAL ARTICLE
Yu Yang, Juan Liang, Siyi Chen, Aihui Zhang, Yaqi Li, Shuai Liu, Qiu Yan
Endometrial decidualization is critical to successful uterine receptivity and embryo implantation. Dysfunction of decidualization is associated with some pregnancy-related disorders, including miscarriage. Protein glycosylation is involved in many physiological and pathological processes. Protein O-fucosyltransferase 1 (poFUT1) is a key enzyme responsible for O-fucosylation biosynthesis on glycoproteins. Bone morphogenetic protein 1 (BMP1) is an essential glycoprotein in reproduction. However, the role and molecular mechanism of fucosylated BMP1 in endometrial stromal cell decidualization are still unknown...
June 20, 2023: Biology of Reproduction
https://read.qxmd.com/read/37237303/the-biology-of-scube
#25
REVIEW
Yuh-Charn Lin, Binay K Sahoo, Shiang-Shin Gau, Ruey-Bing Yang
The SCUBE [Signal peptide-Complement C1r/C1s, Uegf, Bmp1 (CUB)-Epithelial growth factor domain-containing protein] family consists of three proteins in vertebrates, SCUBE1, 2 and 3, which are highly conserved in zebrafish, mice and humans. Each SCUBE gene encodes a polypeptide of approximately 1000 amino acids that is organized into five modular domains: (1) an N-terminal signal peptide sequence, (2) nine tandem epidermal growth factor (EGF)-like repeats, (3) a large spacer region, (4) three cysteine-rich (CR) motifs, and (5) a CUB domain at the C-terminus...
May 26, 2023: Journal of Biomedical Science
https://read.qxmd.com/read/37235726/proteolysis-of-the-low-density-lipoprotein-receptor-in-hepatocytes-is-mediated-by-bmp1-but-not-by-other-astacin-proteases
#26
JOURNAL ARTICLE
Katherine A B Kellett, Kate Fisher, Harry Aldworth, Nigel M Hooper
Bone morphogenetic protein 1 (BMP1), a member of the astacin family of zinc-metalloproteases, proteolytically cleaves the low-density lipoprotein receptor (LDLR) within its ligand-binding domain, reducing the binding and cellular uptake of LDL-cholesterol. Here, we aimed to determine whether astacin proteases other than BMP1 may also cleave LDLR. Although human hepatocytes express all six astacin proteases, including the meprins and mammalian tolloid, we found through pharmacological inhibition and genetic knockdown that only BMP1 contributed to the cleavage of LDLR in its ligand-binding domain...
May 26, 2023: FEBS Letters
https://read.qxmd.com/read/36989217/functionally-distinct-bmp1-isoforms-show-an-opposite-pattern-of-abundance-in-plasma-from-non-small-cell-lung-cancer-subjects-and-controls
#27
JOURNAL ARTICLE
Margaret K R Donovan, Yingxiang Huang, John E Blume, Jian Wang, Daniel Hornburg, Shadi Ferdosi, Iman Mohtashemi, Sangtae Kim, Marwin Ko, Ryan W Benz, Theodore L Platt, Serafim Batzoglou, Luis A Diaz, Omid C Farokhzad, Asim Siddiqui
Advancements in deep plasma proteomics are enabling high-resolution measurement of plasma proteoforms, which may reveal a rich source of novel biomarkers previously concealed by aggregated protein methods. Here, we analyze 188 plasma proteomes from non-small cell lung cancer subjects (NSCLC) and controls to identify NSCLC-associated protein isoforms by examining differentially abundant peptides as a proxy for isoform-specific exon usage. We find four proteins comprised of peptides with opposite patterns of abundance between cancer and control subjects...
2023: PloS One
https://read.qxmd.com/read/36964437/linc01234-sponging-of-the-mir-513a-5p-aox1-axis-is-upregulated-in-osteoporosis-and-regulates-osteogenic-differentiation-of-bone-marrow-mesenchymal-stem-cells
#28
JOURNAL ARTICLE
Zhiyuan Yan, Qiansong He
Non-coding RNAs, including long-chain non-coding RNA (lncRNA) and micro-RNA (miRNA), have been implicated in osteoporosis (OP) progression by regulating osteoblast-dependent bone metabolism. Herein, we investigated whether LINC01234, miR-513a-5p, and AOX1 regulate osteogenic differentiation and proliferation of human bone marrow mesenchymal stem cells (hMSCs). The expression of LINC01234, miR-513a-5p, and AOX1 was monitored using RT-qPCR or western blotting. Cell proliferation was assessed using a CCK8 assay...
March 24, 2023: Molecular Biotechnology
https://read.qxmd.com/read/36918086/delayed-inhibition-of-collagen-deposition-by-targeting-bone-morphogenetic-protein-1-promotes-recovery-after-spinal-cord-injury
#29
JOURNAL ARTICLE
Yifan Huang, Peng Gao, Tao Qin, Bo Chu, Tao Xu, Jiang Yi, Qian Wang, Zhenqi Yang, Tao Jiang, Jin Fan, Shujie Zhao, Wei Zhou, Jian Chen, Guoyong Yin
Fibrotic scars appear after spinal cord injury (SCI) and are mainly composed of fibroblasts and excess extracellular matrix (ECM), including different types of collagen. The temporal and spatial distribution and role of excess collagens and ECM after SCI are not yet fully understood. Here, we identified that the procollagen type I C-terminal propeptide (PICP), a marker of collagen type I deposition, and bone morphogenetic protein 1 (BMP1), a secreted procollagen c-proteinase (PCP) for type I collagen maturation, were significantly elevatedin cerebrospinal fluid of patients with SCI compared with healthy controls, and were associated with spinal cord compression and neurological symptoms...
April 2023: Matrix Biology: Journal of the International Society for Matrix Biology
https://read.qxmd.com/read/36902297/knockdown-of-bmp1-and-pls1-virulence-genes-by-exogenous-application-of-rnai-inducing-dsrna-in-botrytis-cinerea
#30
JOURNAL ARTICLE
Maria Spada, Claudio Pugliesi, Marco Fambrini, Diego Palpacelli, Susanna Pecchia
Botrytis cinerea is a pathogen of wide agronomic and scientific importance partly due to its tendency to develop fungicide resistance. Recently, there has been great interest in the use of RNA interference as a control strategy against B. cinerea . In order to reduce the possible effects on non-target species, the sequence-dependent nature of RNAi can be used as an advantage to customize the design of dsRNA molecules. We selected two genes related to virulence: BcBmp1 (a MAP kinase essential for fungal pathogenesis) and BcPls1 (a tetraspanin related to appressorium penetration)...
March 2, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/36901744/small-molecule-mediated-suppression-of-bmp-signaling-by-selective-inhibition-of-bmp1-dependent-chordin-cleavage
#31
JOURNAL ARTICLE
Takamasa Mizoguchi, Shohei Mikami, Mari Yatou, Yui Kondo, Shuhei Omaru, Shuhei Kuwabara, Wataru Okura, Syouta Noda, Takeshi Tenno, Hidekazu Hiroaki, Motoyuki Itoh
BMP signaling is critical for many biological processes. Therefore, small molecules that modulate BMP signaling are useful for elucidating the function of BMP signaling and treating BMP signaling-related diseases. Here, we performed a phenotypic screening in zebrafish to examine the in vivo effects of N-substituted-2-amino-benzoic acid analogs NPL1010 and NPL3008 and found that they affect BMP signaling-dependent dorsal-ventral (D-V) patterning and bone formation in zebrafish embryos. Furthermore, NPL1010 and NPL3008 suppressed BMP signaling upstream of BMP receptors...
February 21, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/36852110/a-novel-mechanism-underlying-allosteric-regulation-of-adamts-13-revealed-by-hydrogen-deuterium-exchange-plus-mass-spectrometry
#32
JOURNAL ARTICLE
Vikram G Pillai, X Long Zheng
BACKGROUND: ADAMTS-13, a plasma metalloprotease, cleaves von Willebrand factor. ADAMTS-13 activity appears to be regulated through allosteric inhibition by its distal C-terminus. OBJECTIVES: The objective of this study was to better understand how domain-domain interactions may affect ADAMTS-13 conformations and functions. METHODS: We performed deuterium-hydrogen exchange plus mass spectrometry to assess the number and rate of deuterium incorporation into various peptides of full-length ADAMTS-13 and its truncated variants...
January 2023: Research and Practice in Thrombosis and Haemostasis
https://read.qxmd.com/read/36819525/prediction-and-analysis-of-osteoarthritis-hub-genes-with-bioinformatics
#33
JOURNAL ARTICLE
Junqing Zhong, Ding Xiang, Xinlong Ma
BACKGROUND: Osteoarthritis (OA) is the most common type of arthritis. OA can cause joint pain, stiffness, and loss of function. The pathogenesis of OA is not completely clear. Moreover, there is no effective treatment, and clinical management is limited to symptomatic relief or joint surgery. This study utilized bioinformatics to analyze normal and OA articular cartilage samples to find biomarkers and therapeutic targets for OA. METHODS: The GSE169077 gene chip dataset was downloaded from the public gene chip data platform of the National Biotechnology Information Center...
January 31, 2023: Annals of Translational Medicine
https://read.qxmd.com/read/36748401/the-diagnostic-potential-of-plasma-scube-1-concentration-for-pulmonary-embolism-a-pilot-study
#34
JOURNAL ARTICLE
Lu Xiao, Minlian Wang, Sicong Yang, Shulin Li, Qijun Huang, Lan Xu, Yazhen Li, Yingyun Fu
INTRODUCTION: This study aimed to investigate the potential application of plasma signal peptide-complement C1r/C1s, Uegf and Bmp1-epidermal growth factor domain-containing protein 1 (SCUBE-1) as a biomarker in the diagnosis of pulmonary embolism (PE). METHODS: This cross-sectional study enrolled 177 patients who underwent PE diagnostic test and 87 healthy controls. The results of CT pulmonary angiogram (CTPA) were used as reference standards for PE diagnosis. The levels of SCUBE-1 and D-dimer in participants' plasma were detected with enzyme-linked immunosorbent assay and compared among patients with confirmed PE, suspicious PE and healthy controls...
February 7, 2023: Clinical Respiratory Journal
https://read.qxmd.com/read/36682494/sars-cov-2-encoded-orf8-protein-possesses-complement-inhibitory-properties
#35
JOURNAL ARTICLE
Jitendra Kumar, Saurabh Dhyani, Prateek Kumar, Nishi Raj Sharma, Surajit Ganguly
Hyperactivation of the complement system, a major component of innate immunity, has been recognized as one of the core clinical features in severe covid-19 patients. However, how the virus escapes the targeted elimination by the network of activated complement pathways still remains an enigma. Here, we identified SARS-CoV-2-encoded open reading frame 8 (ORF8) protein as one of the major binding partners of human complement C3/C3b components and their metabolites. Our results demonstrated that pre-incubation of ORF8 with C3/C3b in the fluid phase has two immediate functional consequences in the alternative pathway (AP); this pre-incubation inhibits factor I (FI)-mediated proteolysis and blocks factor B (FB) zymogen activation into active Bb...
January 19, 2023: Journal of Biological Chemistry
https://read.qxmd.com/read/36523757/novel-targets-in-renal-fibrosis-based-on-bioinformatic-analysis
#36
JOURNAL ARTICLE
Yuan Yuan, Xi Xiong, Lili Li, Pengcheng Luo
Background: Renal fibrosis is a widely used pathological indicator of progressive chronic kidney disease (CKD), and renal fibrosis mediates most progressive renal diseases as a final pathway. Nevertheless, the key genes related to the host response are still unclear. In this study, the potential gene network, signaling pathways, and key genes under unilateral ureteral obstruction (UUO) model in mouse kidneys were investigated by integrating two transcriptional data profiles. Methods: The mice were exposed to UUO surgery in two independent experiments...
2022: Frontiers in Genetics
https://read.qxmd.com/read/36343604/transcriptomic-analysis-of-intermuscular-bone-development-in-barbel-steed-hemibarbus-labeo
#37
JOURNAL ARTICLE
Jing Yu, Ling Guo, Si-Hai Zhang, Qun-Yin Zhu, Ru-Yi Chen, Boon Hui Wong, Guo-Hua Ding, Jie Chen
Intermuscular bones (IBs), which are little, bony spicules in muscle, are embedded in lower teleosts' myosepta. Despite the importance of studying IB development in freshwater aquaculture species, the genes associated with IB development need to be further explored. In the present study, we identified four stages of IB development in barbel steed (Hemibarbus labeo), namely stage 1: IBs have not emerged, stage 2: a few small IBs have emerged in the tail, stage 3: longer IBs gradually emerged in the tail and stage 4: all of the IBs in the tail are mature and long, via Alizarin red staining...
November 2, 2022: Comparative Biochemistry and Physiology. Part D, Genomics & Proteomics
https://read.qxmd.com/read/36267461/an-analysis-of-bmp1-associated-with-m6a-modification-and-immune-infiltration-in-pancancer
#38
JOURNAL ARTICLE
Yiyi Zhou, Shuangshuang Xu, Qinying Sun, Yuchao Dong
Background: This research explores the underlying link between diagnosis and therapy between bone morphogenetic protein 1 (BMP1) and various cancers. Methods: Three immunotherapeutic cohorts, by the composition of IMvigor210, GSE35640, and GSE78220 were obtained from previously published articles and the Gene Expression Omnibus database. The different expressions of BMP1 in various clinical parameters were conducted, and prognostic analysis was executed utilizing Cox proportional hazard regression and Gene Expression Profiling Interactive Analysis...
2022: Disease Markers
https://read.qxmd.com/read/36139183/transcriptome-profile-analysis-of-intestinal-upper-villus-epithelial-cells-and-crypt-epithelial-cells-of-suckling-piglets
#39
JOURNAL ARTICLE
Lijun Zou, Yirui Shao, Yinfeng Xu, Yuliang Wu, Jian Zhou, Xia Xiong, Yulong Yin
It is well known that the small intestinal epithelial cells of mammals rapidly undergo differentiation, maturation, and apoptosis. However, few studies have defined the physiological state and gene expression changes of enterocytes along the crypt-villus axis in suckling piglets. In the present study, we obtained the intestinal upper villus epithelial cells (F1) and crypt epithelial cells (F3) of 21-day suckling piglets using the divalent chelation and precipitation technique. The activities of alkaline phosphatase, sucrase, and lactase of F1 were significantly higher ( p < 0...
September 7, 2022: Animals: An Open Access Journal From MDPI
https://read.qxmd.com/read/36134447/a-prognostic-six-gene-expression-risk-score-derived-from-proteomic-profiling-of-the-metastatic-colorectal-cancer-secretome
#40
JOURNAL ARTICLE
Javier Robles, Laura Pintado-Berninches, Issam Boukich, Beatriz Escudero, Vivian de Los Rios, Rubén A Bartolomé, Marta Jaén, Ángela Martín-Regalado, María Jesús Fernandez-Aceñero, Juan Ignacio Imbaud, José Ignacio Casal
The necessity to accurately predict recurrence and clinical outcome in early stage colorectal cancer (CRC) is critical to identify those patients who may benefit from adjuvant chemotherapy. Here, we developed and validated a gene-based risk-score algorithm for patient stratification and personalised treatment in early stage disease based on alterations in the secretion of metastasis-related proteins. A quantitative label-free proteomic analysis of the secretome of highly and poorly metastatic CRC cell lines with different genetic backgrounds revealed 153 differentially secreted proteins (fold-change >5)...
September 22, 2022: Journal of Pathology. Clinical Research
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