keyword
https://read.qxmd.com/read/37003158/in-silico-optimization-of-peptides-that-inhibit-wnt-%C3%AE-catenin-signaling
#21
JOURNAL ARTICLE
Minami Fujita, Keisuke Tsuchiya, Takashi Kurohara, Kiyoshi Fukuhara, Takashi Misawa, Yosuke Demizu
The Wnt/β-catenin signaling pathway causes transcriptional activation through the interaction between β-catenin and T cell-specific transcription factor (TCF) and regulates a wide variety of cellular responses, including proliferation, differentiation and cell motility. Excessive transcriptional activation of the Wnt/β-catenin pathway is implicated in developing or exacerbating various cancers. We have recently reported that liver receptor homolog-1 (LRH-1)-derived peptides inhibit the β-catenin/TCF interaction...
March 25, 2023: Bioorganic & Medicinal Chemistry
https://read.qxmd.com/read/36921633/broad-spectrum-hybrid-antimicrobial-peptides-derived-from-pmap-23-with-potential-lps-binding-ability
#22
JOURNAL ARTICLE
Yinfeng Lyu, Meishu Tan, Meng Xue, Wenjing Hou, Chengyi Yang, Anshan Shan, Wensheng Xiang, Baojing Cheng
Antimicrobial peptides, as an integral part of the innate immune system, kill bacteria through a special mechanism of action, making them less susceptible to drug resistance. However, Lipopolysaccharide (LPS) as the permeation barrier on the bacterial membrane, inhibits the antibacterial activity of antimicrobial peptides and triggers the inflammatory response. GWKRKRFG is an LPS binding sequence with a β-boomerang motif that can be linked to antimicrobial peptides to enhance their LPS affinity and reduce the possibility of LPS-induced inflammatory responses...
March 13, 2023: Biochemical Pharmacology
https://read.qxmd.com/read/36907048/efficient-synthesis-and-anticancer-evaluation-of-spider-toxin-peptide-lvtx-8-based-analogues-with-enhanced-stability
#23
JOURNAL ARTICLE
Qiao-Na Chi, Shi-Xi Jia, Hao Yin, Li-E Wang, Xing-Yan Fu, Yan-Nan Ma, Ming-Pu Sun, Yun-Kun Qi, Zhibo Li, Shan-Shan Du
Cytotoxic peptides derived from spider venoms have been considered as promising candidates for anticancer treatment. The novel cell penetrating peptide LVTX-8, which is a 25-residue amphipathic α-helical peptide isolated from spider Lycosa vittata, exhibited potent cytotoxicity and is a potential precursor for further anticancer drug development. Nevertheless, LVTX-8 may be easily degraded by multiple proteases, inducing the proteolytic stability problem and short half-life. In this study, ten LVTX-8-based analogs were rationally designed and the efficient manual synthetic method was established by the DIC/Oxyma based condensation system...
March 2, 2023: Bioorganic Chemistry
https://read.qxmd.com/read/36858531/an-amphipathic-structure-of-a-dipropylglycine-containing-helical-peptide-with-sufficient-length-enables-safe-and-effective-intracellular-sirna-delivery
#24
JOURNAL ARTICLE
Makoto Oba, Mika Shibuya, Yuto Yamaberi, Hidetomo Yokoo, Satoshi Uchida, Atsushi Ueda, Masakazu Tanaka
Amphipathic peptides composed of cationic amino acids and hydrophobic amino acids have cell-penetrating ability and are often used as a delivery tool for membrane-impermeable compounds. Small interfering RNA (siRNAs) are one of the delivery targets for such cell-penetrating peptides (CPPs). Cationic CPPs can associate with anionic siRNAs by electrostatic interactions resulting in the formation of nano-sized complexes, which can deliver siRNAs intracellularly. CPPs containing unnatural amino acids offer promising tools to siRNA delivery...
2023: Chemical & Pharmaceutical Bulletin
https://read.qxmd.com/read/36840592/structural-basis-of-the-mechanisms-of-action-and-immunity-of-lactococcin-a-a-class-iid-bacteriocin
#25
JOURNAL ARTICLE
Ruilian Li, Jinsong Duan, Yicheng Zhou, Jiawei Wang
Lactococcin A (LcnA), a class IId bacteriocin, induces membrane leakage and cell death by specifically binding to the membrane receptor-mannose phosphotransferase system (man-PTS), as is the case for pediocin-like (class IIa) bacteriocins. The cognate immunity protein of bacteriocins, which protects the producer cell from its own bacteriocin, recognizes and binds to the bacteriocin-man-PTS complex, consequently blocking membrane leakage. We previously deciphered the mode of action and immunity of class IIa bacteriocins...
March 29, 2023: Applied and Environmental Microbiology
https://read.qxmd.com/read/36839718/choosing-an-optimal-solvent-is-crucial-for-obtaining-cell-penetrating-peptide-nanoparticles-with-desired-properties-and-high-activity-in-nucleic-acid-delivery
#26
JOURNAL ARTICLE
Abhijit Biswas, Maria Maloverjan, Kärt Padari, Aare Abroi, Margus Rätsep, Sebastian K T S Wärmländer, Jüri Jarvet, Astrid Gräslund, Vambola Kisand, Rünno Lõhmus, Margus Pooga
Cell-penetrating peptides (CPPs) are highly promising transfection agents that can deliver various compounds into living cells, including nucleic acids (NAs). Positively charged CPPs can form non-covalent complexes with negatively charged NAs, enabling simple and time-efficient nanoparticle preparation. However, as CPPs have substantially different chemical and physical properties, their complexation with the cargo and characteristics of the resulting nanoparticles largely depends on the properties of the surrounding environment, i...
January 24, 2023: Pharmaceutics
https://read.qxmd.com/read/36835528/interaction-of-amphipathic-peptide-from-influenza-virus-m1-protein-with-mitochondrial-cytochrome-oxidase
#27
JOURNAL ARTICLE
Ilya P Oleynikov, Roman V Sudakov, Victor A Radyukhin, Alexander M Arutyunyan, Natalia V Azarkina, Tatiana V Vygodina
The Bile Acid Binding Site (BABS) of cytochrome oxidase (CcO) binds numerous amphipathic ligands. To determine which of the BABS-lining residues are critical for interaction, we used the peptide P4 and its derivatives A1-A4. P4 is composed of two flexibly bound modified α-helices from the M1 protein of the influenza virus, each containing a cholesterol-recognizing CRAC motif. The effect of the peptides on the activity of CcO was studied in solution and in membranes. The secondary structure of the peptides was examined by molecular dynamics, circular dichroism spectroscopy, and testing the ability to form membrane pores...
February 18, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/36781451/rational-design-of-stapled-antimicrobial-peptides
#28
REVIEW
YuHao You, HongYu Liu, YouZhuo Zhu, Heng Zheng
The global increase in antimicrobial drug resistance has dramatically reduced the effectiveness of traditional antibiotics. Structurally diverse antibiotics are urgently needed to combat multiple-resistant bacterial infections. As part of innate immunity, antimicrobial peptides have been recognized as the most promising candidates because they comprise diverse sequences and mechanisms of action and have a relatively low induction rate of resistance. However, because of their low chemical stability, susceptibility to proteases, and high hemolytic effect, their usage is subject to many restrictions...
February 12, 2023: Amino Acids
https://read.qxmd.com/read/36746066/development-of-kla-rgd-integrated-lipopeptide-with-the-effect-of-penetrating-membrane-which-target-the-%C3%AE-v-%C3%AE-3-receptor-and-the-application-of-combined-antitumor
#29
JOURNAL ARTICLE
Linhao Ma, Mingcong Niu, Yiping Ji, Lu Liu, XiuLian Gu, Junlin Luo, Guangcheng Wei, Miaomiao Yan
Herein, an amphiphilic cationic anticancer lipopeptide P17 with α-helical structure was synthesized based on the integration of KLA and RGD peptide which could bind with the receptor of integrin αv β3 . P17 could self assemble into stable spherical aggregates in aqueous solution, and which could encapsulate the anticancer drugs (Such as Dox) to form P17 @ Anticancer drug nanomedicine (P17 @ Dox nanomedicine) which could play the combined therapy of P17 and anticancer drugs (Dox)...
February 2, 2023: Colloids and Surfaces. B, Biointerfaces
https://read.qxmd.com/read/36696494/switching-from-membrane-disrupting-to-membrane-crossing-an-effective-strategy-in-designing-antibacterial-polypeptide
#30
JOURNAL ARTICLE
Haodong Zhang, Qi Chen, Jiayang Xie, Zihao Cong, Chuntao Cao, Wenjing Zhang, Donghui Zhang, Sheng Chen, Jiawei Gu, Shuai Deng, Zhongqian Qiao, Xinyue Zhang, Maoquan Li, Ziyi Lu, Runhui Liu
Drug-resistant bacterial infections have caused serious threats to human health and call for effective antibacterial agents that have low propensity to induce antimicrobial resistance. Host defense peptide-mimicking peptides are actively explored, among which poly-β-l-lysine displays potent antibacterial activity but high cytotoxicity due to the helical structure and strong membrane disruption effect. Here, we report an effective strategy to optimize antimicrobial peptides by switching membrane disrupting to membrane penetrating and intracellular targeting by breaking the helical structure using racemic residues...
January 25, 2023: Science Advances
https://read.qxmd.com/read/36578054/the-complex-of-mirna2861-and-cell-penetrating-dimeric-%C3%AE-helical-peptide-accelerates-the-osteogenesis-of-mesenchymal-stem-cells
#31
JOURNAL ARTICLE
So Hee Nam, Yan Lee, Chi-Heon Kim, Dong Eun Kim, Hee-Jin Yang, Sung Bae Park
BACKGROUND: The restoration of the functional ability of mesenchymal stem cells (MSCs) using epigenetic modification is very promising for patients with weak osteogenesis ability. This study focused on the acceleration of osteogenesis from MSCs using microRNA (miRNA)2861 and a cell-penetrating peptide (CPP), LK. METHODS: We performed MSCs penetration test of complex between the LK peptides and miRNA 2861. Three different experiments were performed to investigate the effects of miRNA 2861 on osteogenic differentiation in MSCs: 1) intensity of alizarin red staining, which reflects the status of mineralization by osteoblasts; 2) gene expression related to osteoblast differentiation; and 3) confirmation of corresponding protein translation for comparison with RNA expression levels...
December 29, 2022: Biomaterials Research
https://read.qxmd.com/read/36570290/oligoarginine-conjugated-peptide-foldamers-inhibiting-vitamin-d-receptor-mediated-transcription
#32
JOURNAL ARTICLE
Mami Takyo, Yumi Sato, Naoya Hirata, Keisuke Tsuchiya, Hiroaki Ishida, Takashi Kurohara, Yuta Yanase, Takahito Ito, Yasunari Kanda, Keiko Yamamoto, Takashi Misawa, Yosuke Demizu
The vitamin D receptor (VDR) is a nuclear receptor, which is involved in several physiological processes, including differentiation and bone homeostasis. The VDR is a promising target for the development of drugs against cancer and bone-related diseases. To date, several VDR antagonists, which bind to the ligand binding domain of the VDR and compete with the endogenous agonist 1α,25(OH)D3 , have been reported. However, these ligands contain a secosteroidal skeleton, which is chemically unstable and complicated to synthesize...
December 20, 2022: ACS Omega
https://read.qxmd.com/read/36524010/synthesis-and-characterization-of-a-novel-peptide-targeting-human-tenon-fibroblast-cells-to-modulate-fibrosis-an-integrated-empirical-approach
#33
JOURNAL ARTICLE
Divya Gopal, Hemavathy Nagarajan, Bharathselvi Muthuvel, Umashankar Vetrivel, Ronnie George, Narayanan Janakiraman
Fibrosis is the primary factor influencing the prognosis of glaucoma post-trabeculectomy surgery, an eye condition characterized by increased intraocular pressure (IOP). Despite advancements in surgical procedures and aftercare, it continues to be a serious impediment. During the clinical intervention of scarring, fibrosis is managed by using topical application of combined antifibrotic drugs (mitomycin C). But still, scarring remains a key problem due to minimal drug penetration and nonbioavailability. In this study, we synthesized a cell-specific peptide for modulating scarring in human tenon fibroblasts undergoing epithelial-mesenchymal transition (EMT)...
December 9, 2022: ACS Pharmacology & Translational Science
https://read.qxmd.com/read/36446084/design-and-optimization-of-an-%C3%AE-helical-bundle-dimer-cell-penetrating-peptide-for-in-vivo-drug-delivery
#34
JOURNAL ARTICLE
Soonsil Hyun, Dongwoo Kim, Jane Cho, Dongjin Jeong, Doo Hyun Chung, Jaehoon Yu
To deliver membrane-impermeable drugs into eukaryotic cells, a lot of cell-penetrating peptides (CPPs) were discovered. Previously we designed an amphipathic α-helical peptide which dimerizes itself via its two C-residues. This bis-disulfide-linked dimeric bundle, LK-3, has remarkable cell-penetrating ability at nanomolar concentration, which is an essential prerequisite for CPP. In an effort to optimize the sequence of LK-3, we adjusted its length and evaluated changes in the dimerization rate. We found that a 10-amino-acid monomer has the fastest dimerization rate and subsequently modified its hydrophobic and hydrophilic residues to construct a small peptide library...
November 29, 2022: Bioconjugate Chemistry
https://read.qxmd.com/read/36422064/c-terminal-lipidation-of-sars-cov-2-fusion-peptide-reinstates-superior-membrane-fusion-catalytic-ability
#35
JOURNAL ARTICLE
Avijit Sardar, Tapas Bera, Santosh Kumar Samal, Nikesh Dewangan, Mithila Kamble, Samit Guha, Pradip Kumar Tarafdar
The Spike (S) protein of severe acute respiratory syndrome-associated coronavirus-2 (SARS-CoV-2) mediates a critical stage in infection, the fusion between viral and host membranes. The protein is categorized as a class I viral fusion protein and has two distinct cleavage sites that can be activated by proteases. The activation deploys the fusion peptide (FP) for insertion into the target cell membranes. Recent studies including our experiments showed that the FP was unable to modulate the kinetics of fusion at a low peptide-to-lipid ratio akin to the spike density at the viral surface...
November 24, 2022: Chemistry: a European Journal
https://read.qxmd.com/read/36342284/rationally-designed-minimal-bioactive-domains-of-as-48-bacteriocin-homologs-possess-potent-antileishmanial-properties
#36
JOURNAL ARTICLE
Hannah N Corman, Jessica N Ross, Francisco R Fields, Douglas A Shoue, Shaun W Lee, Mary Ann McDowell
Leishmaniasis, a category I neglected tropical disease, is a group of diseases caused by the protozoan parasite Leishmania species with a wide range of clinical manifestations. Current treatment options can be highly toxic and expensive, with drug relapse and the emergence of resistance. Bacteriocins, antimicrobial peptides ribosomally produced by bacteria, are a relatively new avenue for potential antiprotozoal drugs. Particular interest has been focused on enterocin AS-48, with previously proven efficacy against protozoan species, including Leishmania spp...
November 7, 2022: Microbiology Spectrum
https://read.qxmd.com/read/36328523/effects-of-substituting-disubstituted-amino-acids-into-the-amphipathic-cell-penetrating-peptide-pep-1
#37
JOURNAL ARTICLE
Takuma Kato, Hiroaki Numa, Mihoko Nakamachi, Akiko Asano, Mitsunobu Doi
Amphipathic cell-penetrating peptides based on the pep-1 sequence were synthesized by replacing the three hydrophilic glutamic acid residues with disubstituted, non-proteinogenic, hydrophobic amino acids. These substitutions facilitated maintenance of the peptides' secondary structure in a helical conformation, even in aqueous solution. Stability against enzymatic degradation was improved through the use of disubstituted amino acids. The resultant peptides exhibited high membrane permeability that remained relatively stable during prolonged incubation times...
2022: Chemical & Pharmaceutical Bulletin
https://read.qxmd.com/read/36297635/cecropin-a-improves-the-antibacterial-activity-of-hen-egg-white-lysozyme-against-challenging-salmonella-enterica-serovars
#38
JOURNAL ARTICLE
Hani A Alhadrami, Ahmed M Sayed, Hossam M Hassan, Mostafa E Rateb, Karim Abdelkader
The prevalence of multidrug-resistant Salmonella enterica among animal- and plant-derived food products threatens global healthcare and economic sectors. Hen egg white lysozyme is widely exploited as a food preservative against Gram-positive pathogens. Nevertheless, its limited penetration of the outer membrane renders it ineffective against Gram-negative bacteria. Herein, we present a safe and effective approach to facilitate HEWL access to peptidoglycan layers using cecropin A. In silico analysis of cecropin A peptide revealed an amphipathic α-helical peptide with potential outer membrane permeabilizing activity through its interaction with both hydrophobic and ionic stabilizing forces...
October 16, 2022: Pharmaceutics
https://read.qxmd.com/read/36289944/synthetic-amphipathic-%C3%AE-sheet-temporin-derived-peptide-with-dual-antibacterial-and-anti-inflammatory-activities
#39
JOURNAL ARTICLE
Rosa Bellavita, Elisabetta Buommino, Bruno Casciaro, Francesco Merlino, Floriana Cappiello, Noemi Marigliano, Anella Saviano, Francesco Maione, Rosaria Santangelo, Maria Luisa Mangoni, Stefania Galdiero, Paolo Grieco, Annarita Falanga
Temporin family is one of the largest among antimicrobial peptides (AMPs), which act mainly by penetrating and disrupting the bacterial membranes. To further understand the relationship between the physical-chemical properties and their antimicrobial activity and selectivity, an analogue of Temporin L, [Nle1 , dLeu9 , dLys10 ]TL (Nle-Phe-Val-Pro-Trp-Phe-Lys-Phe-dLeu-dLys-Arg-Ile-Leu-CONH2 ) has been developed in the present work. The design strategy consisted of the addition of a norleucine residue at the N-terminus of the lead peptide sequence, [dLeu9 , dLys10 ]TL, previously developed by our group...
September 21, 2022: Antibiotics
https://read.qxmd.com/read/36184440/-fundamental-studies-on-development-of-next-generation-medium-sized-peptide-drugs
#40
JOURNAL ARTICLE
Takashi Misawa
Medium-sized peptides are expected as a next-generation drug discovery modality because they combine the properties of conventional small-molecule drugs and biopharmaceuticals. Nonetheless, peptides are easily degraded by digestive enzymes such as protease in the body, which could be problematic for the development of peptide-based drugs. To overcome such a problem, peptide-based foldamers containing non-proteinogenic amino acids or cyclized peptides have been reported. In addition, peptides must form stable secondary structures and their side chains should be correctly positioned to exert their bioactivity...
2022: Yakugaku Zasshi: Journal of the Pharmaceutical Society of Japan
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