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https://www.readbyqxmd.com/read/27899675/jet2-viewer-a-database-of-predicted-multiple-possibly-overlapping-protein-protein-interaction-sites-for-pdb-structures
#1
Hughes Ripoche, Elodie Laine, Nicoletta Ceres, Alessandra Carbone
The database JET2 Viewer, openly accessible at http://www.jet2viewer.upmc.fr/, reports putative protein binding sites for all three-dimensional (3D) structures available in the Protein Data Bank (PDB). This knowledge base was generated by applying the computational method JET(2) at large-scale on more than 20 000 chains. JET(2) strategy yields very precise predictions of interacting surfaces and unravels their evolutionary process and complexity. JET2 Viewer provides an online intelligent display, including interactive 3D visualization of the binding sites mapped onto PDB structures and suitable files recording JET(2) analyses...
November 28, 2016: Nucleic Acids Research
https://www.readbyqxmd.com/read/27895564/neural-systems-underlying-emotional-and-non-emotional-interference-processing-an-ale-meta-analysis-of-functional-neuroimaging-studies
#2
Min Xu, Guiping Xu, Yang Yang
Understanding how the nature of interference might influence the recruitments of the neural systems is considered as the key to understanding cognitive control. Although, interference processing in the emotional domain has recently attracted great interest, the question of whether there are separable neural patterns for emotional and non-emotional interference processing remains open. Here, we performed an activation likelihood estimation meta-analysis of 78 neuroimaging experiments, and examined common and distinct neural systems for emotional and non-emotional interference processing...
2016: Frontiers in Behavioral Neuroscience
https://www.readbyqxmd.com/read/27770290/minimally-invasive-resection-of-adrenocortical-carcinoma-a-multi-institutional-study-of-201-patients
#3
Christina W Lee, Ahmed I Salem Md, David F Schneider, Glen E Leverson, Thuy B Tran, George A Poultsides, Lauren M Postlewait, Shishir K Maithel, Tracy S Wang, Ioannis Hatzaras, Rivfka Shenoy, John E Phay, Lawrence Shirley, Ryan C Fields, Linda X Jin, Timothy M Pawlik, Jason D Prescott, Jason K Sicklick, Shady Gad, Adam C Yopp, John C Mansour, Quan-Yang Duh, Natalie Seiser, Carmen C Solorzano, Colleen M Kiernan, Konstantinos I Votanopoulos, Edward A Levine, Sharon M Weber
BACKGROUND AND OBJECTIVES: Minimally invasive surgery for adrenocortical carcinoma (ACC) is controversial. We sought to evaluate the perioperative and long-term outcomes following minimally invasive (MIS) and open resection (OA) of ACC in patients treated with curative intent surgery. METHODS: Retrospective data from patients who underwent adrenalectomy for primary ACC at 13 tertiary care cancer centers were analyzed, including demographics, clinicopathological, and operative outcomes...
October 21, 2016: Journal of Gastrointestinal Surgery: Official Journal of the Society for Surgery of the Alimentary Tract
https://www.readbyqxmd.com/read/27733479/a-phase-i-clinical-trial-and-independent-patient-derived-xenograft-study-of-combined-targeted-treatment-with-dacomitinib-and-figitumumab-in-advanced-solid-tumors
#4
Emiliano Calvo, Jean-Charles Soria, Wen Wee Ma, Tao Wang, Rastilav Bahleda, Anthony Tolcher, Diana Gernhardt, Joseph O'Connell, Robert Millham, Nagdeep Giri, Michael J Wick, Alex A Adjei, Manuel Hidalgo
PURPOSE: This phase I, open-label, single-arm trial assessed the safety and tolerability of dacomitinib-figitumumab combination therapy in patients with advanced solid tumors. EXPERIMENTAL DESIGN: A standard 3+3 dose escalation/de-escalation design was utilized. Starting doses were figitumumab 20 mg/kg administered intravenously once every 3 weeks (q3w) and dacomitinib 30 mg administered orally once daily. We also performed an independent study of the combination in patient-derived xenograft (avatar mouse) models of adenoid cystic carcinoma (ACC)...
October 12, 2016: Clinical Cancer Research: An Official Journal of the American Association for Cancer Research
https://www.readbyqxmd.com/read/27664716/impairment-of-decision-making-and-disruption-of-synchrony-between-basolateral-amygdala-and-anterior-cingulate-cortex-in-the-maternally-separated-rat
#5
Bing Cao, Jun Wang, Xu Zhang, Xiangwei Yang, David Chun-Hei Poon, Beth Jelfs, Rosa H M Chan, Justin Che-Yuen Wu, Ying Li
There is considerable evidence to suggest early life experiences, such as maternal separation (MS), play a role in the prevalence of emotional dysregulation and cognitive impairment. At the same time, optimal decision making requires functional integrity between the amygdala and anterior cingulate cortex (ACC), and any dysfunction of this system is believed to induce decision-making deficits. However, the impact of MS on decision-making behavior and the underlying neurophysiological mechanisms have not been thoroughly studied...
December 2016: Neurobiology of Learning and Memory
https://www.readbyqxmd.com/read/27431446/icud-eau-international-consultation-on-minimally-invasive-surgery-in-urology-laparoscopic-and-robotic-adrenalectomy
#6
Mark W Ball, Ashok K Hemal, Mohamad E Allaf
OBJECTIVE: To provide an evidence-based systematic review of the use of laparoscopic and robotic adrenalectomy in the treatment of adrenal disease as part of the International Consultation on Urologic Diseases and European Association of Urology consultation on Minimally Invasive Surgery in Urology. METHODS: A systematic literature search (January 204-January 2014) was conducted to identify comparative studies assessing the safety and efficacy of minimally invasive adrenal surgery...
July 19, 2016: BJU International
https://www.readbyqxmd.com/read/27412357/adrenocortical-carcinoma-surgery-surgical-extent-and-approach
#7
C Vanbrugghe, A J Lowery, C Golffier, D Taieb, F Sebag
PURPOSE: Adequate tumour resection is the gold standard of care for adrenocortical carcinoma (ACC). However, the optimal surgical strategy remains debatable. In our opinion, the extent of surgery (adequate tumour resection) is the primary concern, rather than the surgical approach (laparoscopic or open). We propose that both surgical approaches have a role in the management of ACC provided the extent of resection is selected based on patient and tumour characteristics and accurate pre-operative investigations...
July 13, 2016: Langenbeck's Archives of Surgery
https://www.readbyqxmd.com/read/27301696/haynaldia-villosa-nam-v1-is-linked-with-the-powdery-mildew-resistance-gene-pm21-and-contributes-to-increasing-grain-protein-content-in-wheat
#8
Chuanzhi Zhao, Xindi Lv, Yinghui Li, Feng Li, Miaomiao Geng, Yangyang Mi, Zhongfu Ni, Xingjun Wang, Chaojie Xie, Qixin Sun
BACKGROUND: The 6AL/6VS translocation lines, carrying the wheat powdery mildew resistance gene Pm21, are planted on more than 3.4 million hectares. The NAM-A1 gene, located on chromosome 6AS of hexaploid wheat, has been implicated with increased wheat grain protein content (GPC). However, the NAM-A1 gene was removed from the 6AL/6VS translocation lines after the original chromosome 6AS was replaced by chromosome 6VS of Haynaldia villosa. The present study aimed to clone the NAM homologous gene from chromosome 6VS, to analyze the changes of GPC in the 6AL/6VS translocation lines, and to develop related molecular markers for wheat molecular breeding...
2016: BMC Genetics
https://www.readbyqxmd.com/read/27289381/time-interval-changes-of-cardiac-cycles-in-fetal-growth-restriction
#9
Yasushi Kurihara, Daisuke Tachibana, Natsuko Yokoi, Kayoko Nakagawa, Kohei Kitada, Masami Hayashi, Sakika Yanai, Hiroko Katayama, Akihiro Hamuro, Takuya Misugi, Kazuharu Tanaka, Mitsuru Fukui, Masayasu Koyama
OBJECTIVE: The aims of this study were to investigate the time intervals of each component of cardiac flow velocity waveforms (FVWs) in fetuses with fetal growth restriction (FGR) and to compare these with those of normal fetuses using reference ranges. METHODS: The durations of atrioventricular (AV) valve opening (AVVO), AV valve closure (AVVC), total E- (total-E) and A- (total-A) waves, total ejection time (total-ET), acceleration time (acc-E for E-wave, acc-A for A-wave, and acc-ET for ejection time), and deceleration time (dec-E for E-wave, dec-A for A-wave, and dec-ET for ejection time) were measured in fetuses with FGR...
August 2016: European Journal of Obstetrics, Gynecology, and Reproductive Biology
https://www.readbyqxmd.com/read/27257820/identification-of-arsenic-resistant-endophytic-bacteria-from-pteris-vittata-roots-and-characterization-for-arsenic-remediation-application
#10
Sarita Tiwari, Bijaya Ketan Sarangi, Sanjog T Thul
Mitigation of arsenic (As) pollution is a topical environmental issue of high R&D priority. The present investigation was carried out to isolate As resistant endophytes from the roots of Indian ecotype Pteris vittata and characterize their As transformation and tolerance ability, plant growth promoting characteristics and their role to facilitate As uptake by the plant. A total of 8 root endophytes were isolated from plants grown in As amended soil (25 mg As kg(-1)). These isolates were studied for minimum inhibitory concentration (MIC), arsenite As(III) - arsenate As(V) transformation ability, plant growth promoting (PGP) characteristics through siderophore, indole acetic acid (IAA) production, phosphatase, ACC deaminase activity, and presence of arsenite oxidase (aox) and arsenite transporter (arsB) genes...
September 15, 2016: Journal of Environmental Management
https://www.readbyqxmd.com/read/27238874/impact-of-laparoscopic-adrenalectomy-on-overall-survival-in-patients-with-nonmetastatic-adrenocortical-carcinoma
#11
Kelly T Huynh, David Y Lee, Briana J Lau, Devin C Flaherty, JiHey Lee, Melanie Goldfarb
BACKGROUND: Appropriate use of laparoscopic adrenalectomy (LA) for adrenocortical carcinoma (ACC) remains controversial because complete resection with negative margins is the best chance for potential cure. This study compared the oncologic outcomes and overall survival (OS) of LA and open adrenalectomy (OA) for ACC. STUDY DESIGN: A retrospective analysis of the National Cancer Data Base (NCDB) between 2010 and 2014 identified 423 European Network for the Study of Adrenal Tumors (ENSAT) stage I to III ACC patients who had LA (n = 137) or OA (n = 286)...
September 2016: Journal of the American College of Surgeons
https://www.readbyqxmd.com/read/27226770/the-relation-between-promoter-chromatin-status-xyr1-and-cellulase-ex-pression-in-trichoderma-reesei
#12
Thiago M Mello-de-Sousa, Alice Rassinger, Christian Derntl, Marcio J Poças-Fonseca, Robert L Mach, Astrid R Mach-Aigner
The ascomycete Trichoderma reesei is used for the production of plant cell wall-degrading enzymes in industrial scale. The interplay of the transactivator Xyr1 and the repressor Cre1 mainly regulates the expression of these enzymes. During induc-ing conditions, such as in the presence of sophorose, the transcription of the two major cellulase-encoding genes, cbh1 and cbh2, is activated as well as the expression of xyr1. In the presence of D-glucose carbon catabolite repression mediated by Cre1 takes place and the expression of Xyr1 and the plant cell wall-degrading enzymes is down-regulated...
April 2016: Current Genomics
https://www.readbyqxmd.com/read/27189451/bioelectricity-generation-and-dewatered-sludge-degradation-in-microbial-capacitive-desalination-cell
#13
Fanyu Meng, Qingliang Zhao, Xiaolin Na, Zhen Zheng, Junqiu Jiang, Liangliang Wei, Jun Zhang
Microbial desalination cell (MDC) is a new approach for the synergy in bioelectricity generation, desalination and organic waste treatment without additional power input. However, current MDC systems cause salt accumulation in anodic wastewater and sludge. A microbial capacitive desalination cell (MCDC) with dewatered sludge as anodic substrate was developed to address the salt migration problem and improve the sludge recycling value by special designed-membrane assemblies, which consisted of cation exchange membranes (CEMs), layers of activated carbon cloth (ACC), and nickel foam...
May 18, 2016: Environmental Science and Pollution Research International
https://www.readbyqxmd.com/read/27164740/dental-implant-treatment-following-trauma-an-investigation-into-the-failure-to-complete-accident-compensation-corporation-funded-care
#14
R Kennedy, C Murray, J Leichter
BACKGROUND AND OBJECTIVES: Among other restorative strategies, the Accident Compensation Corporation (ACC) provides benefits for dental implant treatment to replace teeth lost as a result of trauma. While ACC has funded over 15,000 dental implants since 2002, the outcomes of this treatment and patient perceptions of this treatment have not been investigated. The aim of this study was to investigate the perceptions of the dental implant treatment outcomes and reasons for failure to complete restorative treatment in patients who had undergone trauma-related implant surgery funded by ACC between February 2006 and September 2009, but had not completed the prosthetic component of the treatment...
March 2016: New Zealand Dental Journal
https://www.readbyqxmd.com/read/27147677/amorphous-polyphosphate-amorphous-calcium-carbonate-implant-material-with-enhanced-bone-healing-efficacy-in-a-critical-size-defect-in-rats
#15
Xiaohong Wang, Maximilian Ackermann, Shunfeng Wang, Emad Tolba, Meik Neufurth, Qingling Feng, Heinz C Schröder, Werner E G Müller
In this study the effect of amorphous calcium carbonate (ACC) microparticles and amorphous calcium polyphosphate (polyP) microparticles (termed aCa-polyP-MP) on bone mineral forming cells/tissue was investigated in vitro and in vivo. The ACC particles (termed ACC-P10-MP) were prepared in the presence of Na-polyP. Only the combinations of polyP and ACC microparticles enhanced the proliferation rate of human mesenchymal stem cells (MSCs). Gene expression studies revealed that ACC causes an upregulation of the expression of the cell membrane-associated carbonic anhydrase IX (CA IX; formation of ACC), while the transcript level of the alkaline phosphatase (ALP; liberation of orthophosphate from polyP) changes only relatively little...
2016: Biomedical Materials
https://www.readbyqxmd.com/read/27090352/ultrasonographic-diagnosis-of-early-pregnancy-in-cattle-using-different-ultrasound-systems
#16
Przemysław Racewicz, Marlene Sickinger, Jan Włodarek, Jędrzej M Jaśkowski
OBJECTIVE: To evaluate the efficiency of different ultrasound devices in achieving an early diagnosis of pregnancy in dairy herds. MATERIAL AND METHODS: A total of 1976 Holstein Friesian cows and heifers were artificially inseminated (AI) according to the herd manager's regime. Pregnancy diagnostics were performed between day 26 and 35 after AI using six different types of ultrasound systems (linear vs. sector scanners). Manual rectal palpation between day 45 and 60 after AI was used as the gold standard for pregnancy diagnostics...
June 16, 2016: Tierärztliche Praxis. Ausgabe G, Grosstiere/Nutztiere
https://www.readbyqxmd.com/read/27007121/contributions-of-self-report-and-performance-based-individual-differences-measures-of-social-cognitive-ability-to-large-scale-neural-network-functioning
#17
Ryan Smith, Anna Alkozei, William D S Killgore
Adaptive social behavior appears to require flexible interaction between multiple large-scale brain networks, including the executive control network (ECN), the default mode network (DMN), and the salience network (SN), as well as interactions with the perceptual processing systems these networks function to modulate. Highly connected cortical "hub" regions are also thought to facilitate interactions between these networks, including the dorsolateral prefrontal cortex (DLPFC), dorsomedial prefrontal cortex (DMPFC), anterior cingulate cortex (ACC), and anterior insula (AI)...
March 23, 2016: Brain Imaging and Behavior
https://www.readbyqxmd.com/read/26869019/storage-stability-of-slightly-acidic-electrolyzed-water-and-circulating-electrolyzed-water-and-their-property-changes-after-application
#18
Xiao-Ting Xuan, Meng-Meng Wang, Juhee Ahn, Yan-Na Ma, Shi-Guo Chen, Xing-Qian Ye, Dong-Hong Liu, Tian Ding
Slightly acidic electrolyzed water (SAEW) has been recognized as an effective bactericidal agent with free chlorine, but its limitations include its instability and its great dependence on equipment. Newly developed circulating electrolyzed water (CEW) with a higher available chlorine concentration (ACC) could successfully overcome these limitations. In this study, SAEW (ACC of 20 mg/L), CEW1 (ACC of 200 mg/L), and CEW2 (ACC of 20 mg/L) were evaluated for changes in properties (pH, oxidization reduction potential [ORP], and ACC) during storage in open or closed glass bottles under light or dark conditions at room temperature (approximately 20 °C) and after washing pork and lettuce...
March 2016: Journal of Food Science
https://www.readbyqxmd.com/read/26727534/accelerated-hf-rtms-protocol-has-a-rate-dependent-effect-on-dacc-activation-in-alcohol-dependent-patients-an-open-label-feasibility-study
#19
Sarah C Herremans, Rudi De Raedt, Peter Van Schuerbeek, Daniele Marinazzo, Frieda Matthys, Johan De Mey, Chris Baeken
BACKGROUND: The application of accelerated high-frequency (HF) repetitive transcranial magnetic stimulation (rTMS) could be a potential treatment option for alcohol-dependent patients and may result in a faster clinical response. In this open-label HF-rTMS feasibility study, we wanted to replicate previous findings of baseline brain activation as a predictor of relapse, and to evaluate how this intervention influences the relapse neurocircuit of "treatment-seeking" alcohol-dependent patients, by means of functional magnetic resonance imaging (fMRI) cue-exposure paradigms...
January 2016: Alcoholism, Clinical and Experimental Research
https://www.readbyqxmd.com/read/26707635/differential-expression-of-feeding-related-hypothalamic-neuropeptides-in-the-first-generation-of-quails-divergently-selected-for-low-or-high-feed-efficiency
#20
Kaley Blankenship, Alex Gilley, Alissa Piekarski, Sara Orlowski, Elizabeth Greene, Walter Bottje, Nicholas Anthony, Sami Dridi
Livestock and poultry sectors are facing a combination of challenges, including a substantial increase in global demand for high quality animal protein, general droughts and steady rise in animal feed cost. Thus feed efficiency (FE), which defines the animal's ability to convert feed into body weight, is a vital economic and agricultural trait. Genetic selection for FE has been largely used in chickens and has been applied without knowledge of the underlying molecular mechanisms. Although it has made tremendous progress (breast yield, growth rate, egg production), there have been a number of undesirable changes such as metabolic disorders...
August 2016: Neuropeptides
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