keyword
https://read.qxmd.com/read/37677006/abcg5-g8-crystallization-in-a-lipidic-bicelle-environment-for-x-ray-crystallography
#1
JOURNAL ARTICLE
Sarah Wazir, Danny Farhat, Mahalashmi Srinivasan, Jyh-Yeuan Lee
ATP-binding cassette (ABC) transporters constitute lipid-embedded membrane proteins. Extracting these membrane proteins from the lipid bilayer to an aqueous environment is typically achieved by employing detergents. These detergents disintegrate the lipid bilayer and solubilize the proteins. The intrinsic habitat of membrane proteins within the lipid bilayer poses a challenge in maintaining their stability and uniformity in solution for structural characterization. Bicelles, which comprise a blend of long and short-chain phospholipids and detergents, replicate the natural lipid structure...
August 25, 2023: Journal of Visualized Experiments: JoVE
https://read.qxmd.com/read/36250687/change-in-morphology-of-dimyristoylphosphatidylcholine-bile-salt-derivative-bicelle-assemblies-with-dodecylmaltoside-in-the-disk-and-ribbon-phases
#2
JOURNAL ARTICLE
Wellington C Leite, Yuqi Wu, Sai Venkatesh Pingali, Raquel L Lieberman, Volker S Urban
Bicelles, composed of a mixture of long and short chain lipids, form nanostructured molecular assemblies that are attractive lipid-membrane mimics for in vitro studies of integral membrane proteins. Here we study the effect of a third component, the single chain detergent n -dodecyl- β -d-maltoside (DDM) on the morphology of bicelles composed of 1,2-dimyristoyl- sn -glycero-3-phosphocholine (DMPC) and 3-[(3-cholamidopropyl)dimethylammonio]-2-hydroxy-1-propanesulfonate (CHAPSO) below (10 °C) and above (38 °C) the phase transition...
October 17, 2022: Journal of Physical Chemistry Letters
https://read.qxmd.com/read/36184459/characterization-of-oleic-acid-chapso-bicellar-mixture-formation-via-lipid-transfer
#3
JOURNAL ARTICLE
Shogo Taguchi, Yuta Kimura, Yuka Akiyama, Yasuaki Tachibana, Takuji Yamamoto
Oleic acid/3-[(3-cholamidopropyl)dimethylammonio]-2-hydroxypropane sulfonate (OA/CHAPSO) bicellar mixtures are potential functional membrane materials. The lipid transfer during the formation of these bicellar mixtures was evaluated. The OA/CHAPSO bicellar mixture was prepared by mixing a solution of OA vesicles as a source of bilayer membranes with a solution of CHAPSO as a detergent at different composition ratios, x OA (= [OA] / ([OA] + [CHAPSO])). The lipid transfer was evaluated based on the leakage of fluorescent probe molecules, i...
2022: Journal of Oleo Science
https://read.qxmd.com/read/34229796/a-simple-dilution-method-for-preparation-of-different-aggregates-from-oleic-acid-chapso-bicelles
#4
JOURNAL ARTICLE
Shogo Taguchi, Yasuaki Tachibana, Yuta Kimura, Takuji Yamamoto, Hiroshi Umakoshi
We evaluated the effect of dilution on both the size and packing density of aggregates prepared from a fatty acid (oleic acid, OA)/detergent (3-[(3-cholamidopropyl)dimethylammonio]-2-hydroxypropane sulfonate (CHAPSO)) bicelle as a parent for functional membrane materials. The sizes of the aggregates formed at different molar ratios, X OA (= [OA]/([OA]+[CHAPSO])), of 0.3 and 0.7 and their parent bicelles were measured by dynamic light scattering and transmission electron microscopy; their packing density was evaluated by deconvolution of the fluorescence spectrum, where Laurdan molecules were used as a probe...
December 1, 2021: Journal of Nanoscience and Nanotechnology
https://read.qxmd.com/read/32430033/%C3%AE-secretase-modulators-exhibit-selectivity-for-modulation-of-app-cleavage-but-inverse-%C3%AE-secretase-modulators-do-not
#5
JOURNAL ARTICLE
Christian B Lessard, Edgardo Rodriguez, Thomas B Ladd, Lisa M Minter, Barbara A Osborne, Lucio Miele, Todd E Golde, Yong Ran
BACKGROUND: γ-Secretase is a multiprotein protease that cleaves amyloid protein precursor (APP) and other type I transmembrane proteins. It has two catalytic subunits, presenilins 1 and 2 (PS1 and 2). In our previous report, we observed subtle differences in PS1- and PS2-mediated cleavages of select substrates and slightly different potencies of PS1 versus PS2 inhibition for select γ-secretase inhibitors (GSIs) on various substrates. In this study, we investigated whether γ-secretase modulators (GSMs) and inverse γ-secretase modulators (iGSMs) modulate γ-secretase processivity using multiple different substrates...
May 19, 2020: Alzheimer's Research & Therapy
https://read.qxmd.com/read/29110486/impact-of-detergents-on-membrane-protein-complex-isolation
#6
JOURNAL ARTICLE
Yu-Chen Lee, Jenny Arnling Bååth, Ryan M Bastle, Sonali Bhattacharjee, Mary Jo Cantoria, Mark Dornan, Enrique Gamero-Estevez, Lenzie Ford, Lenka Halova, Jennifer Kernan, Charlotte Kürten, Siran Li, Jerahme Martinez, Nalani Sachan, Medoune Sarr, Xiwei Shan, Nandhitha Subramanian, Keith Rivera, Darryl Pappin, Sue-Hwa Lin
Detergents play an essential role during the isolation of membrane protein complexes. Inappropriate use of detergents may affect the native fold of the membrane proteins, their binding to antibodies, or their interaction with partner proteins. Here we used cadherin-11 (Cad11) as an example to examine the impact of detergents on membrane protein complex isolation. We found that mAb 1A5 could immunoprecipitate Cad11 when membranes were solubilized by dodecyl maltoside (DDM) but not by octylglucoside, suggesting that octylglucoside interferes with Cad11-mAb 1A5 interaction...
January 5, 2018: Journal of Proteome Research
https://read.qxmd.com/read/29078389/dominant-negative-effect-of-the-loss-of-function-%C3%AE-secretase-mutants-on-the-wild-type-enzyme-through-heterooligomerization
#7
JOURNAL ARTICLE
Rui Zhou, Guanghui Yang, Yigong Shi
γ-secretase is an intramembrane protease complex consisting of nicastrin, presenilin-1/2, APH-1a/b, and Pen-2. Hydrolysis of the 99-residue transmembrane fragment of amyloid precursor protein (APP-C99) by γ-secretase produces β-amyloid (Aβ) peptides. Pathogenic mutations in PSEN1 and PSEN2 , which encode the catalytic subunit presenilin-1/2 of γ-secretase, lead to familial Alzheimer's disease in an autosomal dominant manner. However, the underlying mechanism of how the mutant PSEN gene may affect the function of the WT allele remains to be elucidated...
November 28, 2017: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/27285636/characterization-of-small-isotropic-bicelles-with-various-compositions
#8
JOURNAL ARTICLE
K S Mineev, K D Nadezhdin, S A Goncharuk, A S Arseniev
Structural studies of membrane proteins are of great importance and interest, with solution and solid state NMR spectroscopy being very promising tools for that task. However, such investigations are hindered by a number of obstacles, and in the first place by the fact that membrane proteins need an adequate environment that models the cell membrane. One of the most widely used and prospective membrane mimetics is isotropic bicelles. While large anisotropic bicelles are well-studied, the field of small bicelles contains a lot of "white spots"...
July 5, 2016: Langmuir: the ACS Journal of Surfaces and Colloids
https://read.qxmd.com/read/27253220/development-of-sulfonamide-photoaffinity-inhibitors-for-probing-cellular-%C3%AE-secretase
#9
JOURNAL ARTICLE
Christina J Crump, Heather E Murrey, T Eric Ballard, Christopher W Am Ende, Xianzhong Wu, Natalya Gertsik, Douglas S Johnson, Yue-Ming Li
γ-Secretase is a multiprotein complex that catalyzes intramembrane proteolysis associated with Alzheimer's disease and cancer. Here, we have developed potent sulfonamide clickable photoaffinity probes that target γ-secretase in vitro and in cells by incorporating various photoreactive groups and walking the clickable alkyne handle to different positions around the molecule. We found that benzophenone is preferred over diazirine as a photoreactive group within the sulfonamide scaffold for labeling γ-secretase...
August 17, 2016: ACS Chemical Neuroscience
https://read.qxmd.com/read/26454038/assessment-of-the-functionality-and-stability-of-detergent-purified-nachr-from-torpedo-using-lipidic-matrixes-and-macroscopic-electrophysiology
#10
JOURNAL ARTICLE
Luis F Padilla-Morales, José O Colón-Sáez, Joel E González-Nieves, Orestes Quesada-González, José A Lasalde-Dominicci
In our previous study we examined the functionality and stability of nicotinic acetylcholine receptor (nAChR)-detergent complexes (nAChR-DCs) from affinity-purified Torpedo californica (Tc) using fluorescence recovery after photobleaching (FRAP) in Lipidic Cubic Phase (LCP) and planar lipid bilayer (PLB) recordings for phospholipid and cholesterol like detergents. In the present study we enhanced the functional characterization of nAChR-DCs by recording macroscopic ion channel currents in Xenopus oocytes using the two electrode voltage clamp (TEVC)...
January 2016: Biochimica et Biophysica Acta
https://read.qxmd.com/read/26244704/steroidal-surfactants-detection-of-premicellar-aggregation-secondary-aggregation-changes-in-micelles-and-hosting-of-a-highly-charged-negative-substance
#11
JOURNAL ARTICLE
Ramon Barnadas-Rodríguez, Josep Cladera
CHAPSO and CHAPS are zwitterionic surfactants derived from bile salts which are usually employed in protein purification and for the preparation of liposomes and bicelles. Despite their spread use, there are significant discrepancies on the critical concentrations that determine their aggregation behavior. In this work, we study the interaction between these surfactants with the negative fluorescent dye pyranine (HPTS) by absorbance, fluorescence, and infrared spectrometry to establish their concentration-dependent aggregation...
August 25, 2015: Langmuir: the ACS Journal of Surfaces and Colloids
https://read.qxmd.com/read/26112409/potential-prepore-trimer-formation-by-the-bacillus-thuringiensis-mosquito-specific-toxin-molecular-insights-into-a-critical-prerequisite-of-membrane-bound-monomers
#12
JOURNAL ARTICLE
Wilaiwan Sriwimol, Aratee Aroonkesorn, Somsri Sakdee, Chalermpol Kanchanawarin, Takayuki Uchihashi, Toshio Ando, Chanan Angsuthanasombat
The insecticidal feature of the three-domain Cry δ-endotoxins from Bacillus thuringiensis is generally attributed to their capability to form oligomeric pores, causing lysis of target larval midgut cells. However, the molecular description of their oligomerization process has not been clearly defined. Here a stable prepore of the 65-kDa trypsin-activated Cry4Ba mosquito-specific toxin was established through membrane-mimetic environments by forming an ∼200-kDa octyl-β-D-glucoside micelle-induced trimer...
August 21, 2015: Journal of Biological Chemistry
https://read.qxmd.com/read/26079704/automated-analysis-of-calorimetric-demicellization-titrations
#13
JOURNAL ARTICLE
Martin Textor, Sandro Keller
Determination of the critical micellar concentration of surfactants and of the heat of demicellization by means of isothermal titration calorimetry usually involves either calculation of the first derivative of the heat of demicellization with respect to surfactant concentration or application of a generic sigmoidal fit to the demicellization isotherm. Here, we show that a combination of both approaches provides an unbiased and reproducible data analysis strategy without the need for user input other than the calorimetric data proper...
September 15, 2015: Analytical Biochemistry
https://read.qxmd.com/read/25801709/characterization-of-plasma-membrane-associated-type-ii-%C3%AE-d-mannosidase-and-%C3%AE-n-acetylglucosaminidase-of-aquarius-remigis-sperm
#14
JOURNAL ARTICLE
Kimberly Stephens, Catherine D Thaler, Richard A Cardullo
For successful fertilization to occur, molecules on the surface of male and female gametes must recognize each other in a complementary manner. In some organisms, sperm possess a glycosidase on the plasma membrane overlying the head while eggs have glycoproteins that are recognized by those glycosidases resulting in sperm-egg recognition. In this study, two glycosidases, mannosidase and β-N-acetylglucosaminidase, were identified and biochemically characterized in Aquarius remigis sperm. The mannosidase had a Km of 2...
May 2015: Insect Biochemistry and Molecular Biology
https://read.qxmd.com/read/25426518/thermal-stabilization-of-bicelles-by-a-bile-salt-derived-detergent-a-combined-%C3%A2-%C3%A2-p-and-%C3%A2-h-nuclear-magnetic-resonance-study
#15
JOURNAL ARTICLE
Hannah Hazel Morales, Qasim Saleem, Peter M Macdonald
The properties of bicelles composed of mixtures of long-chain lipids dimyristoylphosphatidylcholine (DMPC) and dimyristoylphosphatidylglycerol (DMPG), stabilized by zwitterionic bile salt analogue 3-[(3-cholamidopropyl)dimethyl-d6-ammonio]-2-hydroxy-1-propanesulfonate (CHAPSO-d6), deuterated at both amino methyls, were investigated by a combination of (31)P and (2)H NMR, focusing on the behavior of CHAPSO as a function of temperature. For compositions of molar ratio q = [DMPC + DMPG]/[CHAPSO] = 3, R = [DMPG]/[DMPC + DMPG] = 0, 0...
December 23, 2014: Langmuir: the ACS Journal of Surfaces and Colloids
https://read.qxmd.com/read/24985044/detergent-dependent-separation-of-postsynaptic-density-membrane-rafts-and-other-subsynaptic-structures-from-the-synaptic-plasma-membrane-of-rat-forebrain
#16
JOURNAL ARTICLE
LiYing Zhao, Hiroyuki Sakagami, Tatsuo Suzuki
We systematically investigated the purification process of post-synaptic density (PSD) and post-synaptic membrane rafts (PSRs) from the rat forebrain synaptic plasma membranes by examining the components and the structures of the materials obtained after the treatment of synaptic plasma membranes with TX-100, n-octyl β-d-glucoside (OG) or 3-([3-cholamidopropyl]dimethylammonio)-2-hydroxy-1-propanesulfonate (CHAPSO). These three detergents exhibited distinct separation profiles for the synaptic subdomains. Type I and type II PSD proteins displayed mutually exclusive distribution...
October 2014: Journal of Neurochemistry
https://read.qxmd.com/read/24195484/the-broccoli-brassica-oleracea-phloem-tissue-proteome
#17
JOURNAL ARTICLE
James A Anstead, Steven D Hartson, Gary A Thompson
BACKGROUND: The transport of sugars, hormones, amino acids, proteins, sugar alcohols, and other organic compounds from the sites of synthesis to the sites of use or storage occurs through the conducting cells of the phloem. To better understand these processes a comprehensive understanding of the proteins involved is required. While a considerable amount of data has been obtained from proteomic analyses of phloem sap, this has mainly served to identify the soluble proteins that are translocated through the phloem network...
2013: BMC Genomics
https://read.qxmd.com/read/24184618/detergent-induces-the-formation-of-igg-aggregates-a-multi-methodological-approach
#18
JOURNAL ARTICLE
Samreen Amani, Faisal Nasim, Taqi Ahmed Khan, Naveed Ahmad Fazili, Mohammad Furkan, Imtiyaz Ahmad Bhat, Javed Masood Khan, Rizwan Hasan Khan, Aabgeena Naeem
Role of micellar environment created by Triton X-100 (TX-100) and CHAPSO on protein conformation using IgG as a model system has been studied in this paper. A substantial amount of secondary structure with the reduction in constant tertiary contacts was obtained in both bovine and human IgG in the presence of 0.12 mM TX-100 where as 6 and 8 mM CHAPSO concentration was required for this type of secondary structure. Further addition of either of the detergents result in the induction of α-helix in both the IgGs as evident by helix specific peaks in the amide I region of FTIR and circular dichroism spectra...
2014: Spectrochimica Acta. Part A, Molecular and Biomolecular Spectroscopy
https://read.qxmd.com/read/24059815/morphological-characterization-of-dmpc-chapso-bicellar-mixtures-a-combined-sans-and-nmr-study
#19
JOURNAL ARTICLE
Ming Li, Hannah H Morales, John Katsaras, Norbert Kučerka, Yongkun Yang, Peter M Macdonald, Mu-Ping Nieh
Spontaneously forming structures of a system composed of dimyristoyl phosphatidylcholine (DMPC) and 3-[(3-cholamidopropyl)dimethylammonio]-2-hydroxy-1-propanesulfonate (CHAPSO) were studied by small-angle neutron scattering (SANS), (31)P NMR, and stimulated echo (STE) pulsed field gradient (PFG) (1)H NMR diffusion measurements. Charged lipid dimyristoyl phosphatidylglycerol (DMPG) was used to induce different surface charge densities. The structures adopted were investigated as a function of temperature and lipid concentration for samples with a constant molar ratio of long-chain to short-chain lipids (= 3)...
December 23, 2013: Langmuir: the ACS Journal of Surfaces and Colloids
https://read.qxmd.com/read/22257923/high-throughput-crystallization-of-membrane-proteins-using-the-lipidic-bicelle-method
#20
JOURNAL ARTICLE
Rachna Ujwal, Jeff Abramson
Membrane proteins (MPs) play a critical role in many physiological processes such as pumping specific molecules across the otherwise impermeable membrane bilayer that surrounds all cells and organelles. Alterations in the function of MPs result in many human diseases and disorders; thus, an intricate understanding of their structures remains a critical objective for biological research. However, structure determination of MPs remains a significant challenge often stemming from their hydrophobicity. MPs have substantial hydrophobic regions embedded within the bilayer...
2012: Journal of Visualized Experiments: JoVE
keyword
keyword
32511
1
2
Fetch more papers »
Fetching more papers... Fetching...
Remove bar
Read by QxMD icon Read
×

Save your favorite articles in one place with a free QxMD account.

×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"

We want to hear from doctors like you!

Take a second to answer a survey question.