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https://www.readbyqxmd.com/read/28810903/a-neural-network-multi-task-learning-approach-to-biomedical-named-entity-recognition
#1
Gamal Crichton, Sampo Pyysalo, Billy Chiu, Anna Korhonen
BACKGROUND: Named Entity Recognition (NER) is a key task in biomedical text mining. Accurate NER systems require task-specific, manually-annotated datasets, which are expensive to develop and thus limited in size. Since such datasets contain related but different information, an interesting question is whether it might be possible to use them together to improve NER performance. To investigate this, we develop supervised, multi-task, convolutional neural network models and apply them to a large number of varied existing biomedical named entity datasets...
August 15, 2017: BMC Bioinformatics
https://www.readbyqxmd.com/read/28805947/penile-neurovascular-structure-revisited-immunohistochemical-studies-with-three-dimensional-reconstruction
#2
G N Yin, S-H Park, M-J Choi, A Limanjaya, K Ghatak, N N Minh, J Ock, K-M Song, J-K Ryu, J-K Suh
Penile erection is a neurovascular phenomenon that requires well coordinated and functional interaction between penile vascular and nervous systems. In order to provide a useful tool to examine pathologic changes in the erectile tissue, mainly focusing on penile neurovascular dysfunction, we established the technique to determine the differential distribution of endothelial cells, smooth muscle cells, pericytes, and nerve fibers in the mouse penis using immunohistochemical staining with three-dimensional reconstruction...
August 14, 2017: Andrology
https://www.readbyqxmd.com/read/28803834/transcutaneous-auricular-vagal-nerve-stimulation-tavns-might-be-a-mechanism-behind-the-analgesic-effects-of-auricular-acupuncture
#3
Taras Usichenko, Henriette Hacker, Martin Lotze
BACKGROUND: Randomized clinical trials (RCT) demonstrated that auricular acupuncture (AA) is effective in treatment of acute and chronic pain, although the mechanisms behind AA are not elucidated. METHODS: The data concerning the localization of AA points, which are commonly used to treat pain, were extracted from the meta-analysis of 17 RCTs and evaluated using the anatomical map of auricular afferent nerve supply. RESULTS: Fifteen out of 20 specific AA points, used in the treatment of pain, are situated in areas innervated mostly by the auricular branch of the vagal nerve (ABVN), whereas sham stimulation was applied at the helix of the auricle, innervated by cervical nerves...
August 2, 2017: Brain Stimulation
https://www.readbyqxmd.com/read/28799757/immobilization-of-growth-factors-to-collagen-surfaces-using-visible-light
#4
Gabriella Maria Fernandes Cunha, Hyun Jong Lee, Alisha Kumar, Alexander Kreymerman, Sarah Christine Heilshorn, David Myung
In the treatment of traumatic injuries, burns, and ulcers of the eye, inadequate epithelial tissue healing remains a major challenge. Wound healing is a complex process involving the temporal and spatial interplay between cells and their extracellular milieu. It can be impaired by a variety of causes including infection, poor circulation, loss of critical cells and/or proteins, and a deficiency in normal neural signaling (e.g. neurotrophic ulcers). Ocular anatomy is particularly vulnerable to lasting morbidity from delayed healing, whether it be scarring or perforation of the cornea, destruction of the conjunctival mucous membrane, or cicatricial changes to the eyelids and surrounding skin...
August 11, 2017: Biomacromolecules
https://www.readbyqxmd.com/read/28799490/neurotransplantation-therapy-and-cerebellar-reserve
#5
Jan Cendelin, Hiroshi Mitoma, Mario Manto
Neurotransplantation has been recently the focus of interest as a promising therapy to substitute lost cerebellar neurons and improve cerebellar ataxias. However, since cell differentiation and synaptic formation are required to obtain a functional circuitry, highly integrated reproduction of cerebellar anatomy is not a simple process. Rather than a genuine replacement, recent studies have shown that grafted cells rescue surviving cells from neurodegeneration by exerting trophic effects, supporting mitochondrial function, modulating neuroinflammation, stimulating endogenous regenerative processes, and facilitating cerebellar compensatory properties thanks to neural plasticity...
August 10, 2017: CNS & Neurological Disorders Drug Targets
https://www.readbyqxmd.com/read/28762509/vertebral-column-regionalisation-in-chinook-salmon-oncorhynchus-tshawytscha
#6
A De Clercq, M R Perrott, P S Davie, M A Preece, B Wybourne, N Ruff, A Huysseune, P E Witten
Teleost vertebral centra are often similar in size and shape, but vertebral-associated elements, i.e. neural arches, haemal arches and ribs, show regional differences. Here we examine how the presence, absence and specific anatomical and histological characters of vertebral centra-associated elements can be used to define vertebral column regions in juvenile Chinook salmon (Oncorhynchus tshawytscha). To investigate if the presence of regions within the vertebral column is independent of temperature, animals raised at 8 and 12 °C were studied at 1400 and 1530 degreedays, in the freshwater phase of the life cycle...
July 31, 2017: Journal of Anatomy
https://www.readbyqxmd.com/read/28760682/the-bulbus-arteriosus-of-the-holocephalan-heart-gross-anatomy-histomorphology-pigmentation-and-evolutionary-significance
#7
Cristina Rodríguez, Miguel Lorenzale, Miguel A López-Unzu, Borja Fernández, Francisca Salmerón, Valentín Sans-Coma, Ana C Durán
This study was designed to determine whether the outflow tract of the holocephalan heart is composed of a myocardial conus arteriosus and a non-myocardial bulbus arteriosus, as is the case in elasmobranchs. This is a key issue to verify the hypothesis that these two anatomical components existed from the onset of the jawed vertebrate radiation. The Holocephali are the sister group of the elasmobranchs, sharing with them a common, still unknown Palaeozoic ancestor. The sample examined herein consisted of hearts from individuals of four species, two of them belonging to the Chimaeridae and the other two to the Rhinochimaeridae...
June 3, 2017: Zoology: Analysis of Complex Systems, ZACS
https://www.readbyqxmd.com/read/28756622/fully-automatic-multi-organ-segmentation-in-normal-whole-body-magnetic-resonance-imaging-mri-using-classification-forests-cfs-convolutional-neural-networks-cnns-and-a-multi-atlas-ma-approach
#8
Ioannis Lavdas, Ben Glocker, Konstantinos Kamnitsas, Daniel Rueckert, Henrietta Mair, Amandeep Sandhu, Stuart A Taylor, Eric O Aboagye, Andrea G Rockall
PURPOSE: As part of a programme to implement automatic lesion detection methods for whole body magnetic resonance imaging (MRI) in oncology, we have developed, evaluated and compared three algorithms for fully automatic, multi-organ segmentation in healthy volunteers. METHODS: The first algorithm is based on classification forests (CFs), the second is based on 3D convolutional neural networks (CNNs) and the third algorithm is based on a multi-atlas (MA) approach...
July 30, 2017: Medical Physics
https://www.readbyqxmd.com/read/28750949/a-machine-learning-approach-for-real-time-modelling-of-tissue-deformation-in-image-guided-neurosurgery
#9
Michele Tonutti, Gauthier Gras, Guang-Zhong Yang
OBJECTIVES: Accurate reconstruction and visualisation of soft tissue deformation in real time is crucial in image-guided surgery, particularly in augmented reality (AR) applications. Current deformation models are characterised by a trade-off between accuracy and computational speed. We propose an approach to derive a patient-specific deformation model for brain pathologies by combining the results of pre-computed finite element method (FEM) simulations with machine learning algorithms...
July 24, 2017: Artificial Intelligence in Medicine
https://www.readbyqxmd.com/read/28739165/quantitative-models-of-feline-lumbosacral-dorsal-root-ganglia-neuronal-cell-density
#10
Anastasia K Ostrowski, Zachariah J Sperry, Grant Kulik, Tim M Bruns
BACKGROUND: Dorsal root ganglia (DRG) are spinal root components that contain the cell bodies of converging primary sensory neurons. DRG are becoming a therapeutic target for electrical neural interfaces. Our purpose was to establish methods for quantifying the non-random nature and distribution of neuronal cell bodies within DRG. NEW METHOD: We identified neuronal cell body locations in 26 feline lumbosacral DRG cross-section histological images and used computational tools to quantify spatial trends...
July 21, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28709004/mapping-the-neural-substrates-of-behavior
#11
Alice A Robie, Jonathan Hirokawa, Austin W Edwards, Lowell A Umayam, Allen Lee, Mary L Phillips, Gwyneth M Card, Wyatt Korff, Gerald M Rubin, Julie H Simpson, Michael B Reiser, Kristin Branson
Assigning behavioral functions to neural structures has long been a central goal in neuroscience and is a necessary first step toward a circuit-level understanding of how the brain generates behavior. Here, we map the neural substrates of locomotion and social behaviors for Drosophila melanogaster using automated machine-vision and machine-learning techniques. From videos of 400,000 flies, we quantified the behavioral effects of activating 2,204 genetically targeted populations of neurons. We combined a novel quantification of anatomy with our behavioral analysis to create brain-behavior correlation maps, which are shared as browsable web pages and interactive software...
July 13, 2017: Cell
https://www.readbyqxmd.com/read/28708546/sononet-real-time-detection-and-localisation-of-fetal-standard-scan-planes-in-freehand-ultrasound
#12
Christian F Baumgartner, Konstantinos Kamnitsas, Jacqueline Matthew, Tara P Fletcher, Sandra Smith, Lisa M Koch, Bernhard Kainz, Daniel Rueckert
Identifying and interpreting fetal standard scan planes during 2D ultrasound mid-pregnancy examinations are highly complex tasks which require years of training. Apart from guiding the probe to the correct location, it can be equally difficult for a non-expert to identify relevant structures within the image. Automatic image processing can provide tools to help experienced as well as inexperienced operators with these tasks. In this paper, we propose a novel method based on convolutional neural networks which can automatically detect 13 fetal standard views in freehand 2D ultrasound data as well as provide a localisation of the fetal structures via a bounding box...
July 11, 2017: IEEE Transactions on Medical Imaging
https://www.readbyqxmd.com/read/28707197/quantum-like-behavior-without-quantum-physics-i-kinematics-of-neural-like-systems
#13
S A Selesnick, J P Rawling, Gualtiero Piccinini
Recently there has been much interest in the possible quantum-like behavior of the human brain in such functions as cognition, the mental lexicon, memory, etc., producing a vast literature. These studies are both empirical and theoretical, the tenets of the theory in question being mainly, and apparently inevitably, those of quantum physics itself, for lack of other arenas in which quantum-like properties are presumed to obtain. However, attempts to explain this behavior on the basis of actual quantum physics going on at the atomic or molecular level within some element of brain or neuronal anatomy (other than the ordinary quantum physics that underlies everything), do not seem to survive much scrutiny...
July 13, 2017: Journal of Biological Physics
https://www.readbyqxmd.com/read/28699286/clinical-anatomy-of-fecal-incontinence-in-women
#14
REVIEW
Priyanka K Kadam-Halani, Lily A Arya, Uduak U Andy
Fecal incontinence is a devastating condition that has a severe impact on quality of life. This condition disproportionately affects women and its incidence is increasing with the aging United States population. Fecal continence is maintained by coordination of a functioning anal sphincter complex, intact sensation of the anorectum, rectal compliance, and the ability to consciously control defecation. Particularly important are the puborectalis sling of the levator ani muscle complex and intact innervation of the central and peripheral nervous systems...
July 12, 2017: Clinical Anatomy
https://www.readbyqxmd.com/read/28695209/comment-on-monkey-vocal-tracts-are-speech-ready
#15
Philip Lieberman
Monkey vocal tracts are capable of producing monkey speech, not the full range of articulate human speech. The evolution of human speech entailed both anatomy and brains. Fitch, de Boer, Mathur, and Ghazanfar in Science Advances claim that "monkey vocal tracts are speech-ready," and conclude that "…the evolution of human speech capabilities required neural change rather than modifications of vocal anatomy." Neither premise is consistent either with the data presented and the conclusions reached by de Boer and Fitch themselves in their own published papers on the role of anatomy in the evolution of human speech or with the body of independent studies published since the 1950s...
July 2017: Science Advances
https://www.readbyqxmd.com/read/28690952/targeted-radiofrequency-ablation-as-an-adjunct-in-treatment-of-lumbar-facet-cysts
#16
Jesse Hatgis, Michelle Granville, Aldo Berti, Robert E Jacobson
Lumbar facet cysts are frequently found in patients with facet degeneration and segmental instability. When the facet cyst is localized in the neural foramina and lateral recess or becomes large, it can cause radiculopathy or neurogenic claudication. These symptomatic cysts are typically treated interventionally with drainage and a corticosteroid injection or attempts via overinflation to rupture the cyst; however, these procedures have a significant recurrence rate (up to 50%) and often need to be repeated or lead to lumbar surgery if unsuccessful...
June 6, 2017: Curēus
https://www.readbyqxmd.com/read/28690511/neurotessmesh-a-tool-for-the-generation-and-visualization-of-neuron-meshes-and-adaptive-on-the-fly-refinement
#17
Juan J Garcia-Cantero, Juan P Brito, Susana Mata, Sofia Bayona, Luis Pastor
Gaining a better understanding of the human brain continues to be one of the greatest challenges for science, largely because of the overwhelming complexity of the brain and the difficulty of analyzing the features and behavior of dense neural networks. Regarding analysis, 3D visualization has proven to be a useful tool for the evaluation of complex systems. However, the large number of neurons in non-trivial circuits, together with their intricate geometry, makes the visualization of a neuronal scenario an extremely challenging computational problem...
2017: Frontiers in Neuroinformatics
https://www.readbyqxmd.com/read/28690437/the-use-of-modular-electronic-neuron-simulators-for-neural-circuit-construction-produces-learning-gains-in-an-undergraduate-anatomy-and-physiology-course
#18
Andrew Petto, Zachary Fredin, Joseph Burdo
During the spring of 2016 at the University of Wisconsin-Milwaukee, we implemented a novel educational technology designed to teach undergraduates about the nervous system while allowing them to physically construct their own neural circuits. Modular, electronic neuron simulators called NeuroBytes were used by the students in BIOSCI202 Anatomy and Physiology I, a four-credit course consisting of three hours per week each of lecture and laboratory time. 162 students participated in the laboratory sessions that covered reflexes; 83 in the experimental sections used the NeuroBytes to build a model of the patellar tendon reflex, while 79 in the control sections participated in alternate reflex curricula...
2017: Journal of Undergraduate Neuroscience Education: JUNE: a Publication of FUN, Faculty for Undergraduate Neuroscience
https://www.readbyqxmd.com/read/28678704/auto-context-convolutional-neural-network-auto-net-for-brain-extraction-in-magnetic-resonance-imaging
#19
Seyed Sadegh Mohseni Salehi, Deniz Erdogmus, Ali Gholipour
Brain extraction or whole brain segmentation is an important first step in many of the neuroimage analysis pipelines. The accuracy and robustness of brain extraction, therefore, is crucial for the accuracy of the entire brain analysis process. State-of-the-art brain extraction techniques rely heavily on the accuracy of alignment or registration between brain atlases and query brain anatomy, and/or make assumptions about the image geometry; therefore have limited success when these assumptions do not hold or image registration fails...
June 28, 2017: IEEE Transactions on Medical Imaging
https://www.readbyqxmd.com/read/28674653/the-comparative-osteology-of-plesiochelys-bigleri-n-sp-a-new-coastal-marine-turtle-from-the-late-jurassic-of-porrentruy-switzerland
#20
Christian Püntener, Jérémy Anquetin, Jean-Paul Billon-Bruyat
BACKGROUND: During the Late Jurassic, several groups of eucryptodiran turtles inhabited the shallow epicontinental seas of Western Europe. Plesiochelyidae are an important part of this first radiation of crown-group turtles into coastal marine ecosystems. Fossils of Plesiochelyidae occur in many European localities, and are especially abundant in the Kimmeridgian layers of the Swiss Jura Mountains (Solothurn and Porrentruy). In the mid-19th century, the quarries of Solothurn (NW Switzerland) already provided a large amount of fossil turtles, most notably Plesiochelys etalloni, the best-known plesiochelyid species...
2017: PeerJ
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