keyword
https://read.qxmd.com/read/38648202/abundance-of-modifications-in-mature-mirnas-revealed-by-lc-ms-ms-method-coupled-with-a-two-step-hybridization-purification-strategy
#1
JOURNAL ARTICLE
Chenchen Lü, Hua Xu, Pengxia Gao, Aixue Huang, Minmin Qu, Weiwei He, Haijiang Wu, Jia Chen, Bin Xu, Lei Guo, Jianwei Xie
Accurate detection of endogenous miRNA modifications, such as N6-methyladenosine (m6 A), 7-methylguanosine (m7 G), and 5-methylcytidine (m5 C), poses significant challenges, resulting in considerable uncertainty regarding their presence in mature miRNAs. In this study, we demonstrate for the first time that liquid chromatography coupled with a tandem mass spectrometry (LC-MS/MS) nucleoside analysis method is a practical tool for quantitatively analyzing human miRNA modifications. The newly designed liquid-solid two-step hybridization (LSTH) strategy enhances specificity for miRNA purification, while LC-MS/MS offers robust capability in recognizing modifications and sufficient sensitivity with detection limits ranging from attomoles to low femtomoles...
April 22, 2024: Analytical Chemistry
https://read.qxmd.com/read/38612604/microrna-expression-profiles-in-human-samples-and-cell-lines-revealed-nine-mirnas-associated-with-cisplatin-resistance-in-high-grade-serous-ovarian-cancer
#2
JOURNAL ARTICLE
Marienid Flores-Colón, Mariela Rivera-Serrano, Víctor G Reyes-Burgos, José G Rolón, Josué Pérez-Santiago, María J Marcos-Martínez, Fatima Valiyeva, Pablo E Vivas-Mejía
Metastasis and drug resistance are major contributors to cancer-related fatalities worldwide. In ovarian cancer (OC), a staggering 70% develop resistance to the front-line therapy, cisplatin. Despite proposed mechanisms, the molecular events driving cisplatin resistance remain unclear. Dysregulated microRNAs (miRNAs) play a role in OC initiation, progression, and chemoresistance, yet few studies have compared miRNA expression in OC samples and cell lines. This study aimed to identify key miRNAs involved in the cisplatin resistance of high-grade-serous-ovarian-cancer (HGSOC), the most common gynecological malignancy...
March 28, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38612227/characterization-and-comparative-analysis-of-whole-transcriptome-sequencing-in-high-and-low-fecundity-chongming-white-goat-ovaries-during-the-estrus-phase
#3
JOURNAL ARTICLE
Yuexia Lin, Lingwei Sun, Jianjun Dai, Yuhua Lv, Rongrong Liao, Xiaohui Shen, Jun Gao
Reproductive performance is one of the most important economic traits in the goat industry. Increasing the number of goats is an effective measure to improve production efficiency and reduce production costs. Ovaries are important reproductive organs in female mammals that directly affect the estrous cycle and reproductive abilities. Understanding the complex transcription network of non-coding RNAs (lncRNAs, circRNAs, and miRNAs) and messenger RNA (mRNA) could lead to significant insights into the ovarian regulation of the reproductive processes of animals...
March 22, 2024: Animals: An Open Access Journal From MDPI
https://read.qxmd.com/read/38549107/comparative-analysis-of-gene-expression-between-mice-and-humans-in-acetaminophen-induced-liver-injury-by-integrating-bioinformatics-analysis
#4
JOURNAL ARTICLE
Shanmin Zhao, Yan Feng, Jingyuan Zhang, Qianqian Zhang, Junyang Wang, Shufang Cui
OBJECTIVE: Mice are routinely utilized as animal models of drug-induced liver injury (DILI), however, there are significant differences in the pathogenesis between mice and humans. This study aimed to compare gene expression between humans and mice in acetaminophen (APAP)-induced liver injury (AILI), and investigate the similarities and differences in biological processes between the two species. METHODS: A pair of public datasets (GSE218879 and GSE120652) obtained from GEO were analyzed using "Limma" package in R language, and differentially expressed genes (DEGs) were identified, including co-expressed DEGs (co-DEGs) and specific-expressed DEGS (specific-DEGs)...
March 28, 2024: BMC Medical Genomics
https://read.qxmd.com/read/38528688/soy-derived-isoflavones-as-chemo-preventive-agents-targeting-multiple-signalling-pathways-for-cancer-prevention-and-therapy
#5
REVIEW
Agnieszka Kaufman-Szymczyk, Justyna Jalmuzna, Katarzyna Lubecka-Gajewska
The chemopreventive and chemotherapeutic properties of soy and soy-derived compounds, especially isoflavones, have been extensively studied in recent years. However, in contrast to their anticancer effects, such as cell growth inhibition, cell cycle arrest and apoptosis induction, isoflavones have also been found to promote the growth of cancer cells. Therefore, the aim of this comprehensive review article is to present the current state of knowledge regarding the molecular mechanisms by which soy-derived isoflavones target multiple cellular signalling pathways in cancer cells...
March 25, 2024: British Journal of Pharmacology
https://read.qxmd.com/read/38507172/linc00963-promotes-cisplatin-resistance-in-esophageal-squamous-cell-carcinoma-by-interacting-with-mir-10a-to-upregulate-ska1-expression
#6
JOURNAL ARTICLE
Dongxin Hu, Anqun Ma, Hongda Lu, Zhen Gao, Yue Yu, Jiaming Fan, Shang Liu, Yancheng Wang, Mingyan Zhang
Long non-coding RNA (lncRNA) is associated with a large number of tumor cellular functions together with chemotherapy resistance in a variety of tumors. LINC00963 was identified to regulate the malignant progression of various cancers. However, whether LINC00963 affects drug resistence in esophageal squamous cell carcinoma (ESCC) and the relevant molecular mechanisms have never been reported. This study aims to investigate the effect of LINC00963 on cisplatin resistance in ESCC. After detecting the level of LINC00963 in human esophageal squamous epithelial cells (HET-1 A), ESCC cells (TE-1) and cisplatin resistant cells of ESCC (TE-1/DDP), TE-1/DDP cell line and nude mouse model that interfered with LINC00963 expression were established...
March 20, 2024: Applied Biochemistry and Biotechnology
https://read.qxmd.com/read/38504085/ocu-mir-10a-5p-promotes-the-chondrogenic-differentiation-of-rabbit-bmscs-by-targeting-btrc-mediated-wnt-%C3%AE-catenin-signaling-pathway
#7
JOURNAL ARTICLE
Donghua Liu, Wang Tang, Dongming Tang, Haixia Yan, Feng Jiao
MicroRNAs (miRNAs) play an important role in articular cartilage damage in osteoarthritis (OA). However, the biological role of miRNAs in the chondrogenic differentiation of bone marrow mesenchymal stem cell (BMSC) remains largely unclear. Rabbit bone marrow mesenchymal stem cells (rBMSCs) were isolated, cultured, and identified. Afterwards, rBMSCs were induced to chondrogenic differentiation, examined by Alcian Blue staining. Differentially expressed miRNAs were identified in rBMSCs between induced and non-induced groups by miRNA sequencing analysis, part of which was validated via PCR assay...
March 19, 2024: In Vitro Cellular & Developmental Biology. Animal
https://read.qxmd.com/read/38482417/the-value-of-a-panel-of-circulating-micrornas-in-screening-prostate-cancer
#8
JOURNAL ARTICLE
Chen Sun, Chong Lu, Xinji Li, Rongkang Li, Zhenyu Wen, Zhenjian Ge, Wenkang Chen, Yingqi Li, Suolei Sun, Qingshan Yang, Lingzhi Tao, Hang Li, Yongqing Lai
BACKGROUND: Prostate cancer (PCa) remains a worldwide public health problem that poses a serious threat to the health of men worldwide. Many studies have found that microRNA (miRNA) in serum has the potential to be a biomarker for cancer screening. Our study was conducted to investigate the value of serum miRNAs in PCa screening. METHODS: We selected 12 miRNAs from past studies for its association with PCa. We checked the expression levels of these miRNAs in the serum of 112 PCa patients and 112 healthy controls in a two-stage experiment...
February 29, 2024: Translational Cancer Research
https://read.qxmd.com/read/38410679/regulation-of-mirna-expression-in-the-prefrontal-cortex-by-fecal-microbiota-transplantation-in-anxiety-like-mice
#9
JOURNAL ARTICLE
Simin Chen, Mengjia Li, Changqing Tong, Yanan Wang, Jiahui He, Qi Shao, Yan Liu, Ying Wu, Yuehan Song
BACKGROUND: The gut-brain axis and gut microbiota have emerged as key players in emotional disorders. Recent studies suggest that alterations in gut microbiota may impact psychiatric symptoms through brain miRNA along the gut-brain axis. However, direct evidence linking gut microbiota to the pathophysiology of generalized anxiety disorder (GAD) via brain miRNA is limited. In this study, we explored the effects of fecal microbiota transplantation (FMT) from GAD donors on gut microbiota and prefrontal cortex miRNA in recipient mice, aiming to understand the relationship between these two factors...
2024: Frontiers in Psychiatry
https://read.qxmd.com/read/38396943/sustained-effectiveness-and-safety-of-therapeutic-mir-10a-b-in-alleviating-diabetes-and-gastrointestinal-dysmotility-without-inducing-cancer-or-inflammation-in-murine-liver-and-colon
#10
JOURNAL ARTICLE
Rajan Singh, Se Eun Ha, Han Sung Park, Sushmita Debnath, Hayeong Cho, Gain Baek, Tae Yang Yu, Seungil Ro
microRNAs (miRNAs) are key regulators of both physiological and pathophysiological mechanisms in diabetes and gastrointestinal (GI) dysmotility. Our previous studies have demonstrated the therapeutic potential of miR-10a-5p mimic and miR-10b-5p mimic (miR-10a/b mimics) in rescuing diabetes and GI dysmotility in murine models of diabetes. In this study, we elucidated the safety profile of a long-term treatment with miR-10a/b mimics in diabetic mice. Male C57BL/6 mice were fed a high-fat, high-sucrose diet (HFHSD) to induce diabetes and treated by five subcutaneous injections of miR-10a/b mimics for a 5 month period...
February 14, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38331736/integrated-analysis-of-microrna-and-messenger-rna-expression-profiles-reveals-functional-microrna-in-infectious-bovine-rhinotracheitis-virus-induced-mitochondrial-damage-in-madin-darby-bovine-kidney-cells
#11
JOURNAL ARTICLE
Yingcai Ma, Xueping Guo, Qin He, Lu Liu, Zelong Li, Xiaomin Zhao, Wenxi Gu, Qi Zhong, Na Li, Gang Yao, Xuelian Ma
BACKGROUND: Studies have confirmed that Infectious bovine rhinotracheitis virus (IBRV) infection induces mitochondrial damage. MicroRNAs (miRNAs) are a class of noncoding RNA molecules, which are involved in various biological processes and pathological changes associated with mitochondrial damage. It is currently unclear whether miRNAs participate in IBRV-induced mitochondrial damage in Madin-Darby bovine kidney (MDBK) cells. RESULTS: In the present study, we used high-throughput sequencing technology, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis to screen for mitochondria-related miRNAs and messenger RNAs (mRNAs)...
February 8, 2024: BMC Genomics
https://read.qxmd.com/read/38275797/mir-10a-5p-regulates-the-proliferation-and-differentiation-of-porcine-preadipocytes-targeting-the-klf11-gene
#12
JOURNAL ARTICLE
Wanfeng Zhang, Tianzhi Zhao, Xinyu Gao, Shuangji Ma, Tianye Gong, Yang Yang, Meng Li, Guoqing Cao, Xiaohong Guo, Bugao Li
In the swine industry, meat quality, color, and texture are influenced by the excessive differentiation of fat cells. miRNAs have emerged as integral regulators of adipose development. This study delves into the influence of miR-10a-5b on the proliferation and differentiation of pig preadipocytes. Our findings reveal that miR-10a-5b is prevalent across various tissues. It hinders preadipocyte proliferation, amplifies the expression of adipogenic genes, promotes lipid accumulation, and, as a result, advances preadipocyte differentiation...
January 22, 2024: Animals: An Open Access Journal From MDPI
https://read.qxmd.com/read/38202081/oxidative-stress-mediates-epigenetic-modifications-and-the-expression-of-mirnas-and-genes-related-to-apoptosis-in-diabetic-retinopathy-patients
#13
JOURNAL ARTICLE
Sarah Karam-Palos, Irene Andrés-Blasco, Cristina Campos-Borges, Vicente Zanón-Moreno, Alex Gallego-Martínez, Victor Alegre-Ituarte, Jose J García-Medina, Salvador Pastor-Idoate, Inmaculada Sellés-Navarro, Jorge Vila-Arteaga, Antonio V Lleó-Perez, Maria D Pinazo-Durán
Knowledge on the underlying mechanisms and molecular targets for managing the ocular complications of type 2 diabetes mellitus (T2DM) remains incomplete. Diabetic retinopathy (DR) is a major cause of irreversible visual disability worldwide. By using ophthalmological and molecular-genetic approaches, we gathered specific information to build a data network for deciphering the crosslink of oxidative stress (OS) and apoptosis (AP) processes, as well as to identify potential epigenetic modifications related to noncoding RNAs in the eyes of patients with T2DM...
December 22, 2023: Journal of Clinical Medicine
https://read.qxmd.com/read/38103713/deciphering-the-molecular-mediators-of-triclosan-induced-lipid-accumulation-intervention-via-short-chain-fatty-acids-and-mir-101a
#14
JOURNAL ARTICLE
Jin Yan, Jinyun Li, Yang Wang, Jie Song, Anyu Ni, Lu Fang, Miaocui Xi, Qiuhui Qian, Zejun Wang, Huili Wang
As a potential environmental obesogen, triclosan (TCS) carries inherent risks of inducing obesity and metabolic disorders. However, the underlying molecular mechanisms behind the lipid metabolism disorder induced by TCS have remained elusive. Through a fusion of transcriptomics and microRNA target prediction, we hypothesize that miR-101a as a responsive miRNA to TCS exposure in zebrafish, playing a central role in disturbing lipid homeostasis. As an evidence, TCS exposure triggers a reduction in miR-10a expression that accompanied by elevation of genes linked to regulation of lipid homeostasis...
December 14, 2023: Environmental Pollution
https://read.qxmd.com/read/37948882/expression-of-sperm-micrornas-related-to-bull-fertility-a-systematic-review
#15
JOURNAL ARTICLE
Lucas Petitemberte de Souza, William Borges Domingues, Eduardo Bierhals Blödorn, Leandro da Silva Nunes, Hadassa Gabriela Ortiz, Eliza Rossi Komninou, Vinicius Farias Campos
In this study we proposed to address the following question: "Are there differentially expressed sperm microRNAs related to fertility in bulls?". A systematic review of scientific literature until November 2022 was performed, in accordance with PRISMA guidelines. The main outcome was differentially expressed sperm microRNA from bulls with low versus high fertility profiles identified by using different methods such as field fertility evaluation and sperm laboratory analysis. Were identified 786 documents, of which 13 were selected for qualitative analysis...
November 4, 2023: Research in Veterinary Science
https://read.qxmd.com/read/37929643/breast-adipose-tissue-derived-extracellular-vesicles-from-obese-women-alter-tumor-cell-metabolism
#16
JOURNAL ARTICLE
Shuchen Liu, Alberto Benito-Martin, Fanny A Pelissier Vatter, Sarah Z Hanif, Catherine Liu, Priya Bhardwaj, Praveen Sethupathy, Alaa R Farghli, Phoebe Piloco, Paul Paik, Malik Mushannen, Xue Dong, David M Otterburn, Leslie Cohen, Rohan Bareja, Jan Krumsiek, Leona Cohen-Gould, Samuel Calto, Jason A Spector, Olivier Elemento, David C Lyden, Kristy A Brown
Breast adipose tissue is an important contributor to the obesity-breast cancer link. Extracellular vesicles (EVs) are nanosized particles containing selective cargo, such as miRNAs, that act locally or circulate to distant sites to modulate target cell functions. Here, we find that long-term education of breast cancer cells with EVs obtained from breast adipose tissue of women who are overweight or obese (O-EVs) results in increased proliferation. RNA-seq analysis of O-EV-educated cells demonstrates increased expression of genes involved in oxidative phosphorylation, such as ATP synthase and NADH: ubiquinone oxidoreductase...
November 6, 2023: EMBO Reports
https://read.qxmd.com/read/37893081/in-vitro-microrna-expression-profile-alterations-under-cdk4-6-therapy-in-breast-cancer
#17
JOURNAL ARTICLE
Jasmin Asberger, Kai Berner, Anna Bicker, Marius Metz, Markus Jäger, Daniela Weiß, Clemens Kreutz, Ingolf Juhasz-Böss, Sebastian Mayer, Isabell Ge, Thalia Erbes
BACKGROUND: Breast cancer is the most common type of cancer worldwide. Cyclin-dependent kinase inhibition is one of the backbones of metastatic breast cancer therapy. However, there are a significant number of therapy failures. This study evaluates the biomarker potential of microRNAs for the prediction of a therapy response under cyclin-dependent kinase inhibition. METHODS: This study comprises the analysis of intracellular and extracellular microRNA-expression-level alterations of 56 microRNAs under palbociclib mono as well as combination therapy with letrozole...
October 5, 2023: Biomedicines
https://read.qxmd.com/read/37852050/exploring-the-role-of-mirnas-in-early-chicken-embryonic-development-and-their-significance
#18
JOURNAL ARTICLE
Liqin Liao, Ziqi Yao, Jie Kong, Xinheng Zhang, Hongxin Li, Weiguo Chen, Qingmei Xie
In the early stages of embryonic development, a precise and strictly controlled hierarchy of gene expression is essential to ensure proper development of all cell types and organs. To better understand this gene control process, we constructed a small RNA library from 1- to 5-day-old chick embryos, and identified 2,459 miRNAs including 827 existing, 695 known, and 937 novel miRNAs with bioinformatic analysis. There was absolute high expression of a number of miRNAs in each stage, including gga-miR-363-3p (Em1d), gga-miR-26a-5p (Em2d and Em3d), gga-miR-10a-5p (Em4d), and gga-miR-199-5p (Em5d)...
September 13, 2023: Poultry Science
https://read.qxmd.com/read/37812871/extracellular-vesicle-coupled-mirna-profiles-of-chicken-seminal-plasma-and-their-potential-interaction-with-recipient-cells
#19
JOURNAL ARTICLE
Xintong Han, Yunlei Li, Yunhe Zong, Dongli Li, Jingwei Yuan, Hanhan Yang, Hui Ma, Aixin Ni, Yuanmei Wang, Jinmeng Zhao, Jilan Chen, Tenghe Ma, Yanyan Sun
The presence of EVs in seminal plasma (SPEVs) suggests their involvement on fertility via transmitting information between the original cells and recipient cells. SPEVs-coupled miRNAs have been shown to affect sperm motility, maturation, and capacitation in mammals, but rarely in poultry species. The present study aims to reveal the profile of SPEVs miRNAs and their potential effect on sperm storage and function in poultry. The SPEVs was successfully isolated from 4 different chicken breeds by ultracentrifugation and verified...
September 12, 2023: Poultry Science
https://read.qxmd.com/read/37768544/microrna-10a-5p-mediated-downregulation-of-gata6-inhibits-tumor-progression-in-ovarian-cancer
#20
JOURNAL ARTICLE
Feiying Gao, Qiang Wu, Dan Lu
Ovarian cancer is the common cause of cancer-related death in women and is considered the most deadly gynecological cancer. It has been established that GATA-binding protein 6 (GATA6) is abnormally expressed in several types of malignant tumors and acts as an oncogenic protein or a tumor suppressor. However, the underlying mechanism of GATA6 in ovarian cancer progression has not been elucidated. Data in the present study revealed that GATA6 expression was negatively correlated to microRNA-10a-5p (miR-10a-5p) in ovarian cancer tissue and cells and that GATA6 is directly targeted by miR-10a-5p...
September 28, 2023: Human Cell
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