keyword
MENU ▼
Read by QxMD icon Read
search

Diatom

keyword
https://www.readbyqxmd.com/read/28439805/microphytobenthic-biomass-species-composition-and-environmental-gradients-in-the-mangrove-intertidal-region-of-the-andaman-archipelago-india
#1
Janarthanan Balasubramaniam, Dharmaraj Prasath, Kadeparambil Arjunan Jayaraj
Monthly sampling in mangrove intertidal sediments of Andaman Archipelago was carried out during a 1-year study (January to December, 2013) in order to analyse the spatial and temporal distribution of microphytobenthos (MPB) and MPB biomass (sediment chlorophyll-a (chl-a)) in the surficial layer 0-1 cm. The MPB community was mainly composed of diatoms. The MPB biomass concentration in surface sediment (0-1 cm) ranged from 0.7 to 16.98 μg cm(-3). Population density of benthic diatoms varied from 78 to 224 ind cm(-3)...
May 2017: Environmental Monitoring and Assessment
https://www.readbyqxmd.com/read/28439264/benthic-diatom-based-indices-for-water-quality-assessment-in-two-subtropical-streams
#2
Xiang Tan, Quanfa Zhang, Michele A Burford, Fran Sheldon, Stuart E Bunn
Benthic diatoms have been universally used as indicators to assess water quality in lotic ecosystems. However, most diatom-based indices developed in Europe have not been widely used or tested in other continents such as Asia or Oceania. This study compared the performance of 14 widely-applied diatom indices in assessing ecological conditions in subtropical streams in South East Queensland (SEQ) in Australia and in the upper Han River in China. Most water quality variables in the upper Han River including dissolved organic carbon (DOC), total nitrogen (TN), and soluble reactive phosphorus (SRP) had strong relationships with at least one diatom index, with the exception of IDAP (Index Diatom Artois-Picardie), and TDI (Trophic Diatom Index)...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28437727/new-inter-correlated-genes-targeted-by-diatom-derived-polyunsaturated-aldehydes-in-the-sea-urchin-paracentrotus-lividus
#3
Nadia Ruocco, Anna Maria Fedele, Susan Costantini, Giovanna Romano, Adrianna Ianora, Maria Costantini
The marine environment is continually subjected to the action of stressors (including natural toxins), which represent a constant danger for benthic communities. In the present work using network analysis we identified ten genes on the basis of associated functions (FOXA, FoxG, GFI-1, nodal, JNK, OneCut/Hnf6, TAK1, tcf4, TCF7, VEGF) in the sea urchin Paracentrotus lividus, having key roles in different processes, such as embryonic development and asymmetry, cell fate specification, cell differentiation and morphogenesis, and skeletogenesis...
April 21, 2017: Ecotoxicology and Environmental Safety
https://www.readbyqxmd.com/read/28435443/occurrence-of-plastidial-triacylglycerol-synthesis-and-the-potential-regulatory-role-of-agpat-in-the-model-diatom-phaeodactylum-tricornutum
#4
Srinivasan Balamurugan, Xiang Wang, Hong-Lei Wang, Chun-Jing An, Hui Li, Da-Wei Li, Wei-Dong Yang, Jie-Sheng Liu, Hong-Ye Li
BACKGROUND: Microalgae have emerged as a potential feedstock for biofuels and bioactive components. However, lack of microalgal strains with promising triacylglycerol (TAG) content and desirable fatty acid composition have hindered its commercial feasibility. Attempts on lipid overproduction by metabolic engineering remain largely challenging in microalgae. RESULTS: In this study, a microalgal 1-acyl-sn-glycerol-3-phosphate acyltransferase designated AGPAT1 was identified in the model diatom Phaeodactylum tricornutum...
2017: Biotechnology for Biofuels
https://www.readbyqxmd.com/read/28434541/phytoliths-indicate-significant-arboreal-cover-at-sahelanthropus-type-locality-tm266-in-northern-chad-and-a-decrease-in-later-sites
#5
Alice Novello, Doris Barboni, Florence Sylvestre, Anne-Elisabeth Lebatard, Christine Paillès, Didier L Bourlès, Andossa Likius, Hassane Taisso Mackaye, Patrick Vignaud, Michel Brunet
We analyzed phytolith and diatom remains preserved at 45 Miocene and Pliocene localities dated between 8 and 1 Ma in northern Chad (16-17°N). Some of these localities yielded cranial remains, lower jaws, and teeth of the hominin species Australopithecus bahrelghazali (∼3.6 Ma) and Sahelanthropus tchadensis (∼7 Ma). Of the 111 sediment samples analyzed, 41 yielded phytoliths, 20 yielded diatoms, and seven yielded both phytoliths and diatoms. Freshwater planktonic and tychoplanktonic diatom species, indicative of lacustrine conditions, are dominant (>91%) in the samples...
May 2017: Journal of Human Evolution
https://www.readbyqxmd.com/read/28434198/eukaryotic-diversity-in-late-pleistocene-marine-sediments-around-a-shallow-methane-hydrate-deposit-in-the-japan-sea
#6
M Kouduka, A S Tanabe, S Yamamoto, K Yanagawa, Y Nakamura, F Akiba, H Tomaru, H Toju, Y Suzuki
Marine sediments contain eukaryotic DNA deposited from overlying water columns. However, a large proportion of deposited eukaryotic DNA is aerobically biodegraded in shallow marine sediments. Cold seep sediments are often anaerobic near the sediment-water interface, so eukaryotic DNA in such sediments is expected to be preserved. We investigated deeply buried marine sediments in the Japan Sea, where a methane hydrate deposit is associated with cold seeps. Quantitative PCR analysis revealed the reproducible recovery of eukaryotic DNA in marine sediments at depths up to 31...
April 23, 2017: Geobiology
https://www.readbyqxmd.com/read/28432996/toxicological-effects-of-phenol-on-four-marine-microalgae
#7
Weiyan Duan, Fanping Meng, Yufei Lin, Guoshan Wang
The toxic effects of phenol on four marine microalgae (Dunaliella salina, Platymonas subcordiformis, Phaeodactylum tricornutum Bohlin, and Skeletonema costatum) were evaluated. The 96h EC50 values were 72.29, 92.97, 27.32, and 27.32mgL(-1), respectively, which were lower than those values of freshwater microalgae reported in the literature. During a 96-h exposure to a sub-lethal concentration of phenol (1/2 96h EC50) with green alga (D. salina) and diatom (S. costatum), reactive oxygen species (ROS) accumulation, and chlorophyll a (Chl a) content decrease were simultaneously observed in diatom cells after 48h treatment...
April 13, 2017: Environmental Toxicology and Pharmacology
https://www.readbyqxmd.com/read/28432510/epilithic-diatom-assemblages-and-their-relationships-with-environmental-variables-in-the-nil%C3%A3-fer-stream-basin-bursa-turkey
#8
Didem Karacaoğlu, Nurhayat Dalkıran
Patterns of epilithic diatom species distribution in relation to environmental variables from 12 sampling sites on the main stream and some of its tributaries in the Nilüfer Stream Basin were determined using multivariate statistical techniques. The stream basin has been heavily influenced by anthropogenic effects. The upper part of the basin that is distant from pollution sources mostly has a spring water quality, while the lower part where the stream flows through the urban area and receives domestic and industrial wastewater has a quite low quality...
May 2017: Environmental Monitoring and Assessment
https://www.readbyqxmd.com/read/28430813/phytoplankton-blooms-during-austral-summer-in-the-ross-sea-antarctica-driving-factors-and-trophic-implications
#9
Olga Mangoni, Vincenzo Saggiomo, Francesco Bolinesi, Francesca Margiotta, Giorgio Budillon, Yuri Cotroneo, Cristina Misic, Paola Rivaro, Maria Saggiomo
During the austral summer of 2014, an oceanographic cruise was conducted in the Ross Sea in the framework of the RoME (Ross Sea Mesoscale Experiment) Project. Forty-three hydrological stations were sampled within three different areas: the northern Ross Sea (RoME 1), Terra Nova Bay (RoME 2), and the southern Ross Sea (RoME 3). The ecological and photophysiological characteristics of the phytoplankton were investigated (i.e., size structure, functional groups, PSII maximum quantum efficiency, photoprotective pigments), as related to hydrographic and chemical features...
2017: PloS One
https://www.readbyqxmd.com/read/28429593/model-amphiphilic-block-copolymers-with-tailored-molecular-weight-and-composition-in-pdms-based-films-to-limit-soft-biofouling
#10
Brandon M Wenning, Elisa Martinelli, Sophie Mieszkin, John A Finlay, Daniel A Fischer, James A Callow, Maureen E Callow, Amanda Leonardi, Christopher K Ober, Giancarlo Galli
A set of controlled surface composition films was produced utilizing amphiphilic surface-active block copolymers dispersed in a crosslinked polydimethylsiloxane (PDMS) network. These block copolymers contained oligo(ethylene glycol) (PEGMA) and fluoroalkyl (AF6) side chains in selected ratios and molecular weights to control surface chemistry as well as antifouling (AF) and fouling-release (FR) performance. AF and FR properties were assessed by carrying out settlement and removal assays using two algae, the green macroalga Ulva linza (favors attachment to polar surfaces) and the unicellular diatom Navicula incerta (favors attachment to non-polar surfaces)...
April 21, 2017: ACS Applied Materials & Interfaces
https://www.readbyqxmd.com/read/28429538/finding-a-partner-in-the-ocean-molecular-and-evolutionary-bases-of-the-response-to-sexual-cues-in-a-planktonic-diatom
#11
Swaraj Basu, Shrikant Patil, Daniel Mapleson, Monia Teresa Russo, Laura Vitale, Cristina Fevola, Florian Maumus, Raffaella Casotti, Thomas Mock, Mario Caccamo, Marina Montresor, Remo Sanges, Maria Immacolata Ferrante
Microalgae play a major role as primary producers in aquatic ecosystems. Cell signalling regulates their interactions with the environment and other organisms, yet this process in phytoplankton is poorly defined. Using the marine planktonic diatom Pseudo-nitzschia multistriata, we investigated the cell response to cues released during sexual reproduction, an event that demands strong regulatory mechanisms and impacts on population dynamics. We sequenced the genome of P. multistriata and performed phylogenomic and transcriptomic analyses, which allowed the definition of gene gains and losses, horizontal gene transfers, conservation and evolutionary rate of sex-related genes...
April 21, 2017: New Phytologist
https://www.readbyqxmd.com/read/28423307/aspects-of-phosphorus-physiology-associated-with-phosphate-induced-polar-lipid-remodelling-in-marine-microalgae
#12
José Pedro Cañavate, Isabel Armada, Ismael Hachero-Cruzado
Marine microalgae exhibit a diversified phosphorus physiology and have also been recently found to show high inter-taxa variability in their phosphate induced-polar lipids' remodelling. Identification of phosphorus physiology aspects that are more related to lipid remodelling can contribute to better understanding of such intricate phytoplankton lipid metabolism. Therefore, some aspects of phosphorus physiology related to its uptake, storage and use were evaluated in a taxonomically diversified group of nine marine microalgae that was arranged into three subgroups, each of them including species showing similar polar lipid responses to phosphate...
March 31, 2017: Journal of Plant Physiology
https://www.readbyqxmd.com/read/28421759/is-the-accuracy-of-density-functional-theory-for-atomization-energies-and-densities-in-bonding-regions-correlated
#13
Kurt R Brorsen, Yang Yang, Michael V Pak, Sharon Hammes-Schiffer
The development of approximate exchange-correlation functionals is critical for modern density functional theory. A recent analysis of atomic systems suggested that some modern functionals are straying from the path toward the exact functional because electron densities are becoming less accurate while energies are becoming more accurate since the year 2000. To investigate this trend for more chemically relevant systems, the electron densities in the bonding regions and the atomization energies are analyzed for a series of diatomic molecules with 90 different functionals...
April 25, 2017: Journal of Physical Chemistry Letters
https://www.readbyqxmd.com/read/28421442/silica-containing-inclusions-in-the-cytoplasm-of-diatom-synedra-acus
#14
M A Grachev, Ye D Bedoshvili, E Yu Gerasimov, V I Zaikovskii, K V Gneusheva, Ye V Likhoshway
Cells of the araphid pennate diatom Synedra acus subsp. radians contain large inclusion (1-15 μm) storing silica, as revealed by transmission electron microscopy and EDX-analysis. The size of the inclusions increases with the time of cultivation of diatoms. Approximate concentration of SiO2 in the inclusions is 1-4%. It is assumed that silica in the inclusions is present as gelatinized silica-gel. These results explain the possible mechanism of transport of silicic acid into the cell against the concentration gradient...
January 2017: Doklady. Biochemistry and Biophysics
https://www.readbyqxmd.com/read/28421438/analysis-of-fatty-acid-composition-revealed-differences-in-the-diets-of-tadpoles-of-two-amphibian-species
#15
Yu Yu Dgebuadze, N N Sushchik, I V Bashinskiy, O N Makhutova, G S Kalacheva, V V Osipov, M I Gladyshev
The study of the composition of fatty acid markers of tadpoles of cohabiting amphibian species for the first time revealed differences in their diets: the moor frog Rana arvalis prefers bacteria not associated with plant detritus, whereas the diet of the common spadefoot Pelobates fuscus is based on cyanobacteria, green algae, diatoms, and possibly higher plants. Major differences in the fatty acid composition are determined by the difference in the percentage of eicosapentaenoic and myristic acids.
January 2017: Doklady. Biochemistry and Biophysics
https://www.readbyqxmd.com/read/28421211/bioinspired-carbide-derived-carbons-with-hierarchical-pore-structure-for-the-adsorptive-removal-of-mercury-from-aqueous-solution
#16
C Fischer, M Oschatz, W Nickel, D Leistenschneider, S Kaskel, E Brunner
Biosilica of the diatom species Thalassiosira pseudonana is used as hard template for the synthesis of silicon carbide-derived carbons. The typical species-specific macroporous structure is retained during the nanocasting-chlorine treatment process and the resulting materials exhibit very high specific surface areas up to 2300 m(2) g(-1). Bioinspired carbons show very high capacities in mercury adsorption from aqueous solution compared to reference materials.
April 19, 2017: Chemical Communications: Chem Comm
https://www.readbyqxmd.com/read/28421084/characterization-of-the-heme-pocket-structure-and-ligand-binding-kinetics-of-non-symbiotic-hemoglobins-from-the-model-legume-lotus-japonicus
#17
Laura Calvo-Begueria, Bert Cuypers, Sabine Van Doorslaer, Stefania Abbruzzetti, Stefano Bruno, Herald Berghmans, Sylvia Dewilde, Javier Ramos, Cristiano Viappiani, Manuel Becana
Plant hemoglobins (Hbs) are found in nodules of legumes and actinorhizal plants but also in non-symbiotic organs of monocots and dicots. Non-symbiotic Hbs (nsHbs) have been classified into two phylogenetic groups. Class 1 nsHbs show an extremely high O2 affinity and are induced by hypoxia and nitric oxide (NO), whereas class 2 nsHbs have moderate O2 affinity and are induced by cold and cytokinins. The functions of nsHbs are still unclear, but some of them rely on the capacity of hemes to bind diatomic ligands and catalyze the NO dioxygenase (NOD) reaction (oxyferrous Hb + NO → ferric Hb + nitrate)...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28420744/the-transcription-factor-bzip14-regulates-the-tca-cycle-in-the-diatom-phaeodactylum-tricornutum
#18
Michiel Matthijs, Michele Fabris, Toshihiro Obata, Imogen Foubert, José Manuel Franco-Zorrilla, Roberto Solano, Alisdair R Fernie, Wim Vyverman, Alain Goossens
Diatoms are amongst the most important marine microalgae in terms of biomass, but little is known concerning the molecular mechanisms that regulate their versatile metabolism. Here, the pennate diatom Phaeodactylum tricornutum was studied at the metabolite and transcriptome level during nitrogen starvation and following imposition of three other stresses that impede growth. The coordinated upregulation of the tricarboxylic acid (TCA) cycle during the nitrogen stress response was the most striking observation...
April 18, 2017: EMBO Journal
https://www.readbyqxmd.com/read/28419896/the-use-of-diatoms-in-ecotoxicology-and-bioassessment-insights-advances-and-challenges
#19
REVIEW
Lalit K Pandey, Elizabeth A Bergey, Jie Lyu, Jihae Park, Soyeon Choi, Hojun Lee, Stephen Depuydt, Young-Tae Oh, Sung-Mo Lee, Taejun Han
Diatoms are regularly used for bioassessment and ecotoxicological studies in relation to environmental and anthropogenic disturbances. Traditional taxonomical diatom parameters (cell counts, biovolume estimates, species richness, diversity indices and metrics using sensitive and tolerant diatom species) are regularly used for these studies. In the same context, very less focus was given on new endpoints of diatoms (life-forms, nuclear anomalies, alteration in photosynthetic apparatus shape, motility, lipid bodies, size reduction and deformities), in spite of their numerous merits, such as, their easiness, quickness, cheapness, global acceptation and no especial training in diatom taxonomy...
February 2, 2017: Water Research
https://www.readbyqxmd.com/read/28415000/changes-in-copper-toxicity-towards-diatom-communities-with-experimental-warming
#20
Soizic Morin, Anne Sophie Lambert, Elena Planes Rodriguez, Aymeric Dabrin, Marina Coquery, Stephane Pesce
Biological communities in aquatic environments most commonly face multiple stress, where natural and anthropogenic stressors often act jointly. Their interactions are most easily assessed using short cycle organisms such as periphytic diatoms. In this experiment, we analyzed the combined effects of copper exposure and warming on diatom successions over 6 weeks. Natural biofilm collected in winter was left to grow in mesocosms exposed or unexposed to realistic Cu concentrations at four different temperatures...
April 6, 2017: Journal of Hazardous Materials
keyword
keyword
31400
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"