keyword
https://read.qxmd.com/read/38586016/the-lipid-droplet-protein-dhrs3-is-a-regulator-of-melanoma-cell-state
#21
Eleanor Johns, Yilun Ma, Pakavarin Louphrasitthipol, Christopher Peralta, Miranda V Hunter, Jeremy H Raymond, Henrik Molina, Colin R Goding, Richard M White
Lipid droplets are fat storage organelles composed of a protein envelope and lipid rich core. Regulation of this protein envelope underlies differential lipid droplet formation and function. In melanoma, lipid droplet formation has been linked to tumor progression and metastasis, but it is unknown whether lipid droplet proteins play a role. To address this, we performed proteomic analysis of the lipid droplet envelope in melanoma. We found that lipid droplet proteins were differentially enriched in distinct melanoma states; from melanocytic to undifferentiated...
March 28, 2024: bioRxiv
https://read.qxmd.com/read/38585977/legend-determining-n-glycoprofiles-using-an-explainable-ai-leveraged-model-with-lectin-profiling
#22
Haining Li, Angelo G Peralta, Sanne Schoffelen, Anders Holmgaard Hansen, Johnny Arnsdorf, Song-Min Schinn, Jonathan Skidmore, Biswa Choudhury, Mousumi Paulchakrabarti, Bjorn G Voldborg, Austin W T Chiang, Nathan E Lewis
Glycosylation affects many vital functions of organisms. Therefore, its surveillance is critical from basic science to biotechnology, including biopharmaceutical development and clinical diagnostics. However, conventional glycan structure analysis faces challenges with throughput and cost. Lectins offer an alternative approach for analyzing glycans, but they only provide glycan epitopes and not full glycan structure information. To overcome these limitations, we developed LeGenD, a lectin and AI-based approach to predict N -glycan structures and determine their relative abundance in purified proteins based on lectin-binding patterns...
March 30, 2024: bioRxiv
https://read.qxmd.com/read/38585728/risk-factors-for-food-insecurity-and-association-with-prenatal-care-utilization-among-women-who-took-opioids-during-pregnancy
#23
Lindsay M Parlberg, Jamie E Newman, Stephanie Merhar, Brenda Poindexter, Sara DeMauro, Scott Lorch, Myriam Peralta-Carcelen, Deanne Wilson-Costello, Namasivayam Ambalavanan, Catherine Limperopoulos, Nicole Mack, Jonathan M Davis, Michele Walsh, Carla M Bann
Background. Food insecurity during pregnancy is associated with poorer outcomes for both mothers and their newborns. Given the ongoing opioid crisis in the United States, mothers who take opioids during pregnancy may be at particular risk of experiencing food insecurity. Methods. This research utilized data from 254 biological mothers of infants in the Advancing Clinical Trials in Neonatal Opioid Withdrawal Syndrome (ACT NOW) Outcomes of Babies with Opioid Exposure (OBOE) Study. We examined factors associated with food insecurity among mothers of infants with antenatal opioid exposure and their unexposed (control) counterparts...
March 25, 2024: Research Square
https://read.qxmd.com/read/38584224/photocatalytic-activity-enhancement-of-two-step-and-one-pot-synthesis-of-pd-zno-nanocomposites-an-experimental-and-dft-study
#24
JOURNAL ARTICLE
María de Lourdes Ruiz Peralta, J C Moreno-Hernandez, C E Rocha-Díaz, J H Camacho-García, A Escobedo-Morales, U Salazar-Kuri
Pd/ZnO nanocomposites were successfully synthesized by means of one and two pot synthesis and applied in the photodegradation of Rh6G. The nanocomposites were characterized by XRD, SEM, TEM, FTIR and micro-Raman spectroscopies. It was found the presence of PdZn2 , PdO and agglomerated particles in the support surface for the Palladium-based nanocomposites fabricated by one-pot route; the two-step method allowed the formation of spherical Pd nanoparticles, with homogeneous distribution in the nanocomposite matrix, with an average size of 2...
April 7, 2024: Photochemical & Photobiological Sciences
https://read.qxmd.com/read/38581553/emerging-concepts-on-the-fgf23-regulation-and-activity
#25
REVIEW
María Angélica Rivoira, María Elena Peralta López, Vanessa Areco, Gabriela Díaz de Barboza, María Paula Dionisi, Nori Tolosa de Talamoni
Fibroblast growth factor 23 (FGF23) discovery has provided new insights into the regulation of Pi and Ca homeostasis. It is secreted by osteoblasts and osteocytes, and acts mainly in the kidney, parathyroid, heart, and bone. The aim of this review is to highlight the current knowledge on the factors modulating the synthesis of FGF23, the canonical and non-canonical signaling pathways of the hormone, the role of FGF23 in different pathophysiological conditions, and the anti-FGF23 therapy. This is a narrative review based on the search of PubMed database in the range of years 2000-2023 using the keywords local and systemic regulators of FGF23 synthesis, FGF23 receptors, canonical and non-canonical pathways, pathophysiological conditions and FGF23, and anti-FGF23 therapy, focusing the data on the molecular mechanisms...
April 6, 2024: Molecular and Cellular Biochemistry
https://read.qxmd.com/read/38578816/a-rapid-approach-for-sex-assignment-by-rad-seq-using-a-reference-genome
#26
JOURNAL ARTICLE
Diego M Peralta, Juan I Túnez, Ulises E Rodríguez Cruz, Santiago G Ceballos
Sex identification is a common objective in molecular ecology. While many vertebrates display sexual dimorphism, determining the sex can be challenging in certain situations, such as species lacking clear sex-related phenotypic characteristics or in studies using non-invasive methods. In these cases, DNA analyses serve as valuable tools not only for sex determination but also for validating sex assignment based on phenotypic traits. In this study, we developed a bioinformatic framework for sex assignment using genomic data obtained through GBS, and having an available closely related genome assembled at the chromosome level...
2024: PloS One
https://read.qxmd.com/read/38578482/prenylated-flavanone-isolated-from-dalea-species-as-a-potential-multitarget-neuroprotector-in-an-in-vitro-alzheimer-s-disease-mice-model
#27
JOURNAL ARTICLE
Maria D Santi, Diego Carvalho, Rosina Dapueto, Manuela Bentura, Maia Zeni, Loreto Martínez-González, Ana Martínez, Mariana A Peralta, Ana Rey, Javier Giglio, Maria G Ortega, Eduardo Savio, Juan A Abin-Carriquiry, Florencia Arredondo
Alzheimer's disease (AD) involves a neurodegenerative process that has not yet been prevented, reversed, or stopped. Continuing with the search for natural pharmacological treatments, flavonoids are a family of compounds with proven neuroprotective effects and multi-targeting behavior. The American genus Dalea L. (Fabaceae) is an important source of bioactive flavonoids. In this opportunity, we tested the neuroprotective potential of three prenylated flavanones isolated from Dalea species in a new in vitro pre-clinical AD model previously developed by us...
April 5, 2024: Neurotoxicity Research
https://read.qxmd.com/read/38565538/a-compendium-of-multi-omics-data-illuminating-host-responses-to-lethal-human-virus-infections
#28
JOURNAL ARTICLE
Amie J Eisfeld, Lindsey N Anderson, Shufang Fan, Kevin B Walters, Peter J Halfmann, Danielle Westhoff Smith, Larissa B Thackray, Qing Tan, Amy C Sims, Vineet D Menachery, Alexandra Schäfer, Timothy P Sheahan, Adam S Cockrell, Kelly G Stratton, Bobbie-Jo M Webb-Robertson, Jennifer E Kyle, Kristin E Burnum-Johnson, Young-Mo Kim, Carrie D Nicora, Zuleyma Peralta, Alhaji U N'jai, Foday Sahr, Harm van Bakel, Michael S Diamond, Ralph S Baric, Thomas O Metz, Richard D Smith, Yoshihiro Kawaoka, Katrina M Waters
Human infections caused by viral pathogens trigger a complex gamut of host responses that limit disease, resolve infection, generate immunity, and contribute to severe disease or death. Here, we present experimental methods and multi-omics data capture approaches representing the global host response to infection generated from 45 individual experiments involving human viruses from the Orthomyxoviridae, Filoviridae, Flaviviridae, and Coronaviridae families. Analogous experimental designs were implemented across human or mouse host model systems, longitudinal samples were collected over defined time courses, and global multi-omics data (transcriptomics, proteomics, metabolomics, and lipidomics) were acquired by microarray, RNA sequencing, or mass spectrometry analyses...
April 2, 2024: Scientific Data
https://read.qxmd.com/read/38564236/size-dependence-and-high-temperature-stability-of-radial-vortex-magnetic-textures-imprinted-by-superconductor-stray-fields
#29
JOURNAL ARTICLE
David Sanchez-Manzano, Gloria Orfila, Anke Sander, Lourdes Marcano, Fernando Gallego, Mohamad-Assaad Mawass, Francesco Grilli, Ashima Arora, Andrea Peralta, Fabian A Cuellar, Jose A Fernandez-Roldan, Nicolas Reyren, Florian Kronast, Carlos Leon, Alberto Rivera-Calzada, Javier E Villegas, Jacobo Santamaria, Sergio Valencia
Swirling spin textures, including topologically nontrivial states, such as skyrmions, chiral domain walls, and magnetic vortices, have garnered significant attention within the scientific community due to their appeal from both fundamental and applied points of view. However, their creation, controlled manipulation, and stability are typically constrained to certain systems with specific crystallographic symmetries, bulk or interface interactions, and/or a precise stacking sequence of materials. Recently, a new approach has shown potential for the imprint of magnetic radial vortices in soft ferromagnetic compounds making use of the stray field of YBa2 Cu3 O7-δ superconducting microstructures in ferromagnet/superconductor (FM/SC) hybrids at temperatures below the superconducting transition temperature ( T C )...
April 2, 2024: ACS Applied Materials & Interfaces
https://read.qxmd.com/read/38560121/pre-and-post-implementation-protocol-for-non-operative-management-of-grade-iii-v-splenic-injuries-an-observational-study
#30
JOURNAL ARTICLE
Ismail Mahmood, Basil Younis, Mohammad Alabdallat, Saji Mathradikkal, Husham Abdelrahman, Ayman El-Menyar, Mohammad Asim, Mohammad Kasim, Monira Mollazehi, Ammar Al-Hassani, Ruben Peralta, Sandro Rizoli, Hassan Al-Thani
BACKGROUND: Grade (III-V) blunt splenic injuries (BSI) in hemodynamically stable patients represent clinical challenges for successful non-operative management (NOM). In 2014, Our institution proposed a treatment protocol requiring splenic angiography and embolization for stable, intermediate, and high-grade BSI. It also included a follow-up CT scan for grade III BSI. We sought to assess the success rate of NOM in treating intermediate and high-grade BSI, following a standardized treatment protocol at a level 1 trauma center...
April 15, 2024: Heliyon
https://read.qxmd.com/read/38558210/enhancing-the-thermoelectric-properties-of-conjugated-polymers-by-suppressing-dopant-induced-disorder
#31
JOURNAL ARTICLE
Suhao Wang, Wenjin Zhu, Ian E Jacobs, William A Wood, Zichen Wang, Suraj Manikandan, Jens Wenzel Andreasen, Hio-Ieng Un, Sarah Ursel, Sébastien Peralta, Shaoliang Guan, Jean-Claude Grivel, Stéphane Longuemart, Henning Sirringhaus
Doping is a crucial strategy to enhance the performance of various organic electronic devices. However, in many cases, the random distribution of dopants in conjugated polymers leads to the disruption of the polymer microstructure, severely constraining the achievable performance of electronic devices. Here, we show that by ion-exchange doping polythiophene-based P[(3HT)1-x -stat-(T)x ] (x = 0 (P1), 0.12 (P2), 0.24 (P3), and 0.36 (P4)), remarkably high electrical conductivity of > 400 S cm-1 and power factor of >16 μW m-1 K-2 were achieved for the random copolymer P3, ranking it among highest ever reported for unaligned P3HT-based films, significantly higher than that of P1(< 40 S cm-1, < 4 μW m-1 K-2 )...
April 1, 2024: Advanced Materials
https://read.qxmd.com/read/38549444/infiltration-of-immune-cells-to-the-brain-and-its-relation-to-the-pathogenesis-of-alzheimer-s-and-parkinson-s-diseases
#32
REVIEW
Citlalli Netzahualcoyotzi, Juan Jair Santillán-Cigales, Laura Virginia Adalid-Peralta, Iván Velasco
The neurovascular unit, composed of vascular endothelium, vascular smooth muscle, extracellular matrix components, pericytes, astrocytes, microglia, and neurons, allows the highly regulated exchange of molecules and the limited trafficking of cells to the brain through coordinated signaling activity. The passage of peripheral immune cells to the brain parenchyma is observed when there is clear damage to the barriers of this neurovascular unit, as occurs in traumatic brain injury. The possibility of leukocyte infiltration to the brain in neurodegenerative conditions has been proposed...
March 29, 2024: Journal of Neurochemistry
https://read.qxmd.com/read/38546455/pelvic-lymph-node-involvement-and-risk-of-recurrence-in-hpv-associated-endocervical-adenocarcinoma-stage-ia2-ib1-according-to-silva-s-system-in-two-colombian-cancer-centers
#33
JOURNAL ARTICLE
Jairo Alonso Hernández, Juliana Rodríguez, Gabriel Rendón, Lina Maria Trujillo, María Islena Beltrán, Carolina Mantilla, Carolina Echeverry, María Angélica Mendoza, Mónica Gil, Marcela Núñez, Marcela Hernández, Jonathan Peralta, René Pareja
OBJECTIVE: To compare the pelvic lymph node involvement and risk of recurrence in patients with human papillomavirus (HPV)-associated endocervical adenocarcinoma stage IA2-IB1 undergoing hysterectomy and/or trachelectomy plus lymphadenectomy, according to Silva's classification system. METHODS: A retrospective cohort study was performed in two Colombian cancer centers. The cases were classified according to the Silva classification system. Clinical, surgical, and histopathological variables were evaluated...
March 28, 2024: International Journal of Gynaecology and Obstetrics
https://read.qxmd.com/read/38545663/generative-artificial-intelligence-for-innovation-in-pediatric-dental-residency-interviews
#34
JOURNAL ARTICLE
Chaitanya P Puranik, Kaci Pickett-Nairne, Tracy de Peralta, Katherine Chin
No abstract text is available yet for this article.
March 28, 2024: Journal of Dental Education
https://read.qxmd.com/read/38543960/comparative-analysis-of-sars-cov-2-antibody-responses-across-global-and-lesser-studied-vaccines
#35
JOURNAL ARTICLE
José Victor Zambrana, Carlos Saenz, Hannah E Maier, Mayling Brenes, Andrea Nuñez, Anita Matamoros, Mabel Hernández, Keyla Dumas, Cristhian Toledo, Leonardo Peralta, Aubree Gordon, Angel Balmaseda
Few data are available on antibody response for some SARS-CoV-2 vaccines, and there is a lack of ability to compare vaccine responses in the same population. This cross-sectional study conducted in Nicaragua examines the SARS-CoV-2 antibody responses in individuals, previously exposed to high infection rates who have received various vaccines. The vaccines under comparison include well-known ones like Pfizer (BNT162b2) and AstraZeneca (ChAdOx1-S), alongside less-studied vaccines including Soberana (Soberana 02), Abdala (CIGB-66), and Sputnik V/Sputnik Light...
March 19, 2024: Vaccines
https://read.qxmd.com/read/38542751/biotechnological-nutritional-and-therapeutic-applications-of-quinoa-chenopodium-quinoa-willd-and-its-by-products-a-review-of-the-past-five-year-findings
#36
REVIEW
Rhaira Fernanda Ayoub Casalvara, Bruna Mayara Roldão Ferreira, José Eduardo Gonçalves, Natália Ueda Yamaguchi, Adelar Bracht, Lívia Bracht, Jurandir Fernando Comar, Anacharis Babeto de Sá-Nakanishi, Cristina Giatti Marques de Souza, Rafael Castoldi, Rúbia Carvalho Gomes Corrêa, Rosane Marina Peralta
This study aimed to provide an updated critical review of the nutritional, therapeutic, biotechnological, and environmental aspects involved in the exploitation of Chenopodium quinoa Willd and its biowastes. Special attention was devoted to investigations of the therapeutic and nutritional properties of different parts and varieties of quinoa as well as of the use of the biowaste resulting from the processing of grain. Studies published from 2018 onward were prioritized. Extracts and fractions obtained from several Chenopodium quinoa matrices showed antioxidant, antidiabetic, immunoregulatory, neuroprotective, and antimicrobial effects in in vitro and in vivo models and some clinical studies...
March 14, 2024: Nutrients
https://read.qxmd.com/read/38541921/the-longitudinal-association-between-multiple-frailty-criteria-and-depressive-symptomatology-five-years-later-in-older-adults-a-decision-tree-modelling-approach
#37
JOURNAL ARTICLE
Marcelo de Maio Nascimento, Adilson Marques, Élvio R Gouveia, Priscila Marconcin, Miguel Peralta, Andreas Ihle
Background : To examine the longitudinal association between frailty criteria and depression (DEP) in a large sample of older Europeans using decision tree models, and to examine complex relationships between frailty criteria and DEP symptomatology. Methods : Data come from waves six and eight of the Population Survey of Health, Ageing and Retirement in Europe. DEP was assessed using the EURO-D scale (wave 8) and frailty (wave 6). We included 27,122 people (56.9% women), aged 50 or over. Results : Women indicated a higher rate of DEP (29...
March 15, 2024: Journal of Clinical Medicine
https://read.qxmd.com/read/38540071/chronic-undernutrition-in-ovine-twin-pregnancies-abolishes-differences-in-birth-weight-due-to-sex-an-evaluation-of-the-role-of-nutritional-and-antioxidant-supplementation
#38
JOURNAL ARTICLE
Francisco Sales, Óscar A Peralta, Mónica De Los Reyes, Camila Sandoval, Paula Martínez-Ros, Carolina Rojas, Antonio Gonzáles-Bulnes, Víctor H Parraguez
In twin pregnancies of discordant sex, the male fetus grows larger than the female co-twin. Our study aimed to determine the effect of the sex of co-twins on lambs' birth weight in ovine pregnancies developed under natural undernourishment. Additionally, we investigated whether the nutritional and/or antioxidant supplementation provided to ewes during pregnancy could modulate the potential effects associated with the sex of co-twins. Ninety-six birth records of twin pregnancies of sheep grazing the natural Patagonian prairies were analyzed...
March 21, 2024: Animals: An Open Access Journal From MDPI
https://read.qxmd.com/read/38528748/welcoming-our-new-editorial-advisory-board-chairs
#39
EDITORIAL
David Peralta
Old friends, new leadership roles! We present our new set of Editorial Advisory Board Chairs: Anna K. H. Hirsch (HIPS Saarland), Sangyong Jon (KAIST), and Gianluca Sbardella (University of Salerno).
March 15, 2024: ChemMedChem
https://read.qxmd.com/read/38526103/the-rise-and-fall-of-stretched-bond-errors-extending-the-analysis-of-perdew-zunger-self-interaction-corrections-of-reaction-barrier-heights-beyond-the-lsda
#40
JOURNAL ARTICLE
Yashpal Singh, Juan E Peralta, Koblar A Jackson
Incorporating self-interaction corrections (SIC) significantly improves chemical reaction barrier height predictions made using density functional theory methods. We present a detailed orbital-by-orbital analysis of these corrections for three semi-local density functional approximations (DFAs) situated on the three lowest rungs of Jacob's ladder of approximations. The analysis is based on Fermi-Löwdin Orbital Self-Interaction Correction (FLOSIC) calculations performed at several steps along the reaction pathway from the reactants (R) to the transition state (TS) to the products (P) for four representative reactions selected from the BH76 benchmark set...
March 28, 2024: Journal of Chemical Physics
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