keyword
https://read.qxmd.com/read/37476610/cnn-stability-training-improves-robustness-to-scanner-and-ihc-based-image-variability-for-epithelium-segmentation-in-cervical-histology
#241
JOURNAL ARTICLE
Felipe Miranda Ruiz, Bernd Lahrmann, Liam Bartels, Alexandra Krauthoff, Andreas Keil, Steffen Härtel, Amy S Tao, Philipp Ströbel, Megan A Clarke, Nicolas Wentzensen, Niels Grabe
BACKGROUND: In digital pathology, image properties such as color, brightness, contrast and blurriness may vary based on the scanner and sample preparation. Convolutional Neural Networks (CNNs) are sensitive to these variations and may underperform on images from a different domain than the one used for training. Robustness to these image property variations is required to enable the use of deep learning in clinical practice and large scale clinical research. AIMS: CNN Stability Training (CST) is proposed and evaluated as a method to increase CNN robustness to scanner and Immunohistochemistry (IHC)-based image variability...
2023: Frontiers in Medicine
https://read.qxmd.com/read/37476106/a-comparison-of-the-effectiveness-of-neurodynamic-sliding-technique-and-self-myofascial-release-technique-for-reducing-hamstring-tightness-in-healthy-individuals-a-prospective-study
#242
JOURNAL ARTICLE
Amreen Afsarpatel Shaikh, Maliha Fatima Quraishi, Tajuddin Chitapure, Priyanka Abhay Joshi, Saba Afsar Shaikh, Nikita Nandgaonkar, Komal Sable
BACKGROUND: Hamstring tightness is prevalent among college-going students aged 18-25 years, leading to an increased risk of recurrent injury, reduced athletic performance, post-exercise soreness, and decreased coordination. Myofascial release and neurodynamic sliding technique are two interventions used to alleviate this issue. Myofascial release is a concept that involves pain originating from the muscle and fascia. The neurodynamic sliding technique is a method of producing sliding movement of neural structures relative to their mechanical interfaces...
June 2023: Curēus
https://read.qxmd.com/read/37474612/oxonium-ion-scanning-mass-spectrometry-for-large-scale-plasma-glycoproteomics
#243
JOURNAL ARTICLE
Matthew E H White, Ludwig R Sinn, D Marc Jones, Joost de Folter, Simran Kaur Aulakh, Ziyue Wang, Helen R Flynn, Lynn Krüger, Pinkus Tober-Lau, Vadim Demichev, Florian Kurth, Michael Mülleder, Véronique Blanchard, Christoph B Messner, Markus Ralser
Protein glycosylation, a complex and heterogeneous post-translational modification that is frequently dysregulated in disease, has been difficult to analyse at scale. Here we report a data-independent acquisition technique for the large-scale mass-spectrometric quantification of glycopeptides in plasma samples. The technique, which we named 'OxoScan-MS', identifies oxonium ions as glycopeptide fragments and exploits a sliding-quadrupole dimension to generate comprehensive and untargeted oxonium ion maps of precursor masses assigned to fragment ions from non-enriched plasma samples...
July 20, 2023: Nature Biomedical Engineering
https://read.qxmd.com/read/37474506/computational-analysis-of-peripheral-blood-smears-detects-disease-associated-cytomorphologies
#244
JOURNAL ARTICLE
José Guilherme de Almeida, Emma Gudgin, Martin Besser, William G Dunn, Jonathan Cooper, Torsten Haferlach, George S Vassiliou, Moritz Gerstung
Many hematological diseases are characterized by altered abundance and morphology of blood cells and their progenitors. Myelodysplastic syndromes (MDS), for example, are a group of blood cancers characterised by cytopenias, dysplasia of hematopoietic cells and blast expansion. Examination of peripheral blood slides (PBS) in MDS often reveals changes such as abnormal granulocyte lobulation or granularity and altered red blood cell (RBC) morphology; however, some of these features are shared with conditions such as haematinic deficiency anemias...
July 20, 2023: Nature Communications
https://read.qxmd.com/read/37469836/relationship-between-temporal-dynamics-of-intrinsic-brain-activity-and-motor-function-remodeling-in-patients-with-acute-bgis
#245
JOURNAL ARTICLE
Xiaoling Chen, Wenmei Li
BACKGROUND: patients with acute basal ganglia ischemic stroke (BGIS) show changes in local brain activity represented by the amplitude of low-frequency fluctuation (ALFF), but the time-varying characteristics of this local nerve activity are still unclear. This study aimed to investigate the abnormal time-varying local brain activity of patients with acute BGIS by using the ALFF method combined with the sliding-window approach. METHODS: In this study, 34 patients with acute BGIS with motor dysfunction and 44 healthy controls (HCs) were recruited...
2023: Frontiers in Neuroscience
https://read.qxmd.com/read/37469503/dissipation-mechanisms-and-superlubricity-in-solid-lubrication-by-wet-transferred-solution-processed-graphene-flakes-implications-for-micro-electromechanical-devices
#246
JOURNAL ARTICLE
Renato Buzio, Andrea Gerbi, Cristina Bernini, Luca Repetto, Andrea Silva, Andrea Vanossi
Solution-processed few-layer graphene flakes, dispensed to rotating and sliding contacts via liquid dispersions, are gaining increasing attention as friction modifiers to achieve low friction and wear at technologically relevant interfaces. Vanishing friction states, i.e., superlubricity, have been documented for nearly-ideal nanoscale contacts lubricated by individual graphene flakes. However, there is no clear understanding if superlubricity might persist for larger and morphologically disordered contacts, as those typically obtained by incorporating wet-transferred solution-processed flakes into realistic microscale contact junctions...
July 14, 2023: ACS Applied Nano Materials
https://read.qxmd.com/read/37467642/multi-scale-representation-attention-based-deep-multiple-instance-learning-for-gigapixel-whole-slide-image-analysis
#247
JOURNAL ARTICLE
Hangchen Xiang, Junyi Shen, Qingguo Yan, Meilian Xu, Xiaoshuang Shi, Xiaofeng Zhu
Recently, convolutional neural networks (CNNs) directly using whole slide images (WSIs) for tumor diagnosis and analysis have attracted considerable attention, because they only utilize the slide-level label for model training without any additional annotations. However, it is still a challenging task to directly handle gigapixel WSIs, due to the billions of pixels and intra-variations in each WSI. To overcome this problem, in this paper, we propose a novel end-to-end interpretable deep MIL framework for WSI analysis, by using a two-branch deep neural network and a multi-scale representation attention mechanism to directly extract features from all patches of each WSI...
July 8, 2023: Medical Image Analysis
https://read.qxmd.com/read/37451230/cervixformer-a-multi-scale-swin-transformer-based-cervical-pap-smear-wsi-classification-framework
#248
JOURNAL ARTICLE
Anwar Khan, Seunghyeon Han, Naveed Ilyas, Yong-Moon Lee, Boreom Lee
BACKGROUND AND OBJECTIVES: Cervical cancer affects around 0.5 million women per year, resulting in over 0.3 million fatalities. Therefore, repetitive screening for cervical cancer is of utmost importance. Computer-assisted diagnosis is key for scaling up cervical cancer screening. Current recognition algorithms, however, perform poorly on the whole-slide image (WSI) analysis, fail to generalize for different staining methods and on uneven distribution for subtype imaging, and provide sub-optimal clinical-level interpretations...
July 10, 2023: Computer Methods and Programs in Biomedicine
https://read.qxmd.com/read/37449128/whole-mandibular-canal-segmentation-using-transformed-dental-cbct-volume-in-frenet-frame
#249
JOURNAL ARTICLE
Huanmiao Zhao, Junhua Chen, Zhaoqiang Yun, Qianjin Feng, Liming Zhong, Wei Yang
Accurate segmentation of the mandibular canal is essential in dental implant and maxillofacial surgery, which can help prevent nerve or vascular damage inside the mandibular canal. Achieving this is challenging because of the low contrast in CBCT scans and the small scales of mandibular canal areas. Several innovative methods have been proposed for mandibular canal segmentation with positive performance. However, most of these methods segment the mandibular canal based on sliding patches, which may adversely affect the morphological integrity of the tubular structure...
July 2023: Heliyon
https://read.qxmd.com/read/37443538/department-wide-validation-in-digital-pathology-experience-from-an-academic-teaching-hospital-using-the-uk-royal-college-of-pathologists-guidance
#250
JOURNAL ARTICLE
Mai Kelleher, Richard Colling, Lisa Browning, Derek Roskell, Sharon Roberts-Gant, Ketan A Shah, Helen Hemsworth, Kieron White, Gabrielle Rees, Monica Dolton, Maria Fernanda Soares, Clare Verrill
AIM: we describe our experience of validating departmental pathologists for digital pathology reporting, based on the UK Royal College of Pathologists (RCPath) "Best Practice Recommendations for Implementing Digital Pathology (DP)," at a large academic teaching hospital that scans 100% of its surgical workload. We focus on Stage 2 of validation (prospective experience) prior to full validation sign-off. METHODS AND RESULTS: twenty histopathologists completed Stage 1 of the validation process and subsequently completed Stage 2 validation, prospectively reporting a total of 3777 cases covering eight specialities...
June 22, 2023: Diagnostics
https://read.qxmd.com/read/37409737/all-covalent-nuclease-resistant-and-hydrogel-tethered-dna-hairpin-probes-map-pn-cell-traction-forces
#251
JOURNAL ARTICLE
Sk Aysha Rashid, Yixiao Dong, Hiroaki Ogasawara, Maia Vierengel, Mark Edoho Essien, Khalid Salaita
Cells sense and respond to the physical properties of their environment through receptor-mediated signaling, a process known as mechanotransduction, which can modulate critical cellular functions such as proliferation, differentiation, and survival. At the molecular level, cell adhesion receptors, such as integrins, transmit piconewton (pN)-scale forces to the extracellular matrix, and the magnitude of the force plays a critical role in cell signaling. The most sensitive approach to measuring integrin forces involves DNA hairpin-based sensors, which are used to quantify and map forces in living cells...
July 6, 2023: ACS Applied Materials & Interfaces
https://read.qxmd.com/read/37405413/the-effect-of-recombinant-erythropoietin-on-long-term-outcome-after-moderate-to-severe-traumatic-brain-injury
#252
JOURNAL ARTICLE
Markus B Skrifvars, Nora Luethi, Michael Bailey, Craig French, Alistair Nichol, Tony Trapani, Colin McArthur, Yaseen M Arabi, Stepani Bendel, David J Cooper, Rinaldo Bellomo
PURPOSE: Recombinant erythropoietin (EPO) administered for traumatic brain injury (TBI) may increase short-term survival, but the long-term effect is unknown. METHODS: We conducted a pre-planned long-term follow-up of patients in the multicentre erythropoietin in TBI trial (2010-2015). We invited survivors to follow-up and evaluated survival and functional outcome with the Glasgow Outcome Scale-Extended (GOSE) (categories 5-8 = good outcome), and secondly, with good outcome determined relative to baseline function (sliding scale)...
July 2023: Intensive Care Medicine
https://read.qxmd.com/read/37402783/seismic-performance-evaluation-of-plastered-cellular-lightweight-concrete-clc-block-masonry-walls
#253
JOURNAL ARTICLE
Khalid Khan, Khan Shahzada, Akhtar Gul, Inayat Ullah Khan, Sayed M Eldin, Mudassir Iqbal
The current research presents a novel and sustainable load-bearing system utilizing cellular lightweight concrete block masonry walls. These blocks, known for their eco-friendly properties and increasing popularity in the construction industry, have been studied extensively for their physical and mechanical characteristics. However, this study aims to expand upon previous research by examining the seismic performance of these walls in a seismically active region, where cellular lightweight concrete block usage is emerging...
July 4, 2023: Scientific Reports
https://read.qxmd.com/read/37401184/estimating-the-irreducible-uncertainty-in-visual-diagnosis-statistical-modeling-of-skill-using-response-models
#254
JOURNAL ARTICLE
Martin V Pusic, Amy Rapkiewicz, Tenko Raykov, Jonathan Melamed
BACKGROUND: For the representative problem of prostate cancer grading, we sought to simultaneously model both the continuous nature of the case spectrum and the decision thresholds of individual pathologists, allowing quantitative comparison of how they handle cases at the borderline between diagnostic categories. METHODS: Experts and pathology residents each rated a standardized set of prostate cancer histopathological images on the International Society of Urological Pathologists (ISUP) scale used in clinical practice...
July 3, 2023: Medical Decision Making: An International Journal of the Society for Medical Decision Making
https://read.qxmd.com/read/37385127/stiffness-sensing-by-smooth-muscle-cells-continuum-mechanics-modeling-of-the-acto-myosin-role
#255
JOURNAL ARTICLE
Ali Akbar Karkhaneh Yousefi, Claudie Petit, Amira Ben Hassine, Stéphane Avril
Aortic smooth muscle cells (SMCs) play a vital role in maintaining homeostasis in the aorta by sensing and responding to mechanical stimuli. However, the mechanisms that underlie the ability of SMCs to sense and respond to stiffness change in their environment are still partially unclear. In this study, we focus on the role of acto-myosin contractility in stiffness sensing and introduce a novel continuum mechanics approach based on the principles of thermal strains. Each stress fiber satisfies a universal stress-strain relationship driven by a Young's modulus, a contraction coefficient scaling the fictitious thermal strain, a maximum contraction stress and a softening parameter describing the sliding effects between actin and myosin filaments...
June 24, 2023: Journal of the Mechanical Behavior of Biomedical Materials
https://read.qxmd.com/read/37382311/surgical-complications-and-incomplete-canal-widening-of-the-vertebral-body-sliding-osteotomy-to-treat-cervical-myelopathy
#256
JOURNAL ARTICLE
Dong-Ho Lee, Sung Tan Cho, Sehan Park, Chang Ju Hwang, Jae Hwan Cho, Jin Hwan Kim
OBJECTIVE: Vertebral body sliding osteotomy (VBSO) is a surgical technique that anteriorly translates the vertebral body with compressive lesions and achieves cord decompression through canal widening. However, data on the surgical complications of VBSO are lacking. Furthermore, it has not been known whether VBSO could be a viable alternative in the treatment of cervical myelopathy even when the preoperative canal-occupying ratio (COR) is large, which seems to frequently result in incomplete canal widening...
June 23, 2023: Journal of Neurosurgery. Spine
https://read.qxmd.com/read/37379615/dense-dilated-multi-scale-supervised-attention-guided-network-for-histopathology-image-segmentation
#257
JOURNAL ARTICLE
Rangan Das, Shirsha Bose, Ritesh Sur Chowdhury, Ujjwal Maulik
Over the last couple of decades, the introduction and proliferation of whole-slide scanners led to increasing interest in the research of digital pathology. Although manual analysis of histopathological images is still the gold standard, the process is often tedious and time consuming. Furthermore, manual analysis also suffers from intra- and interobserver variability. Separating structures or grading morphological changes can be difficult due to architectural variability of these images. Deep learning techniques have shown great potential in histopathology image segmentation that drastically reduces the time needed for downstream tasks of analysis and providing accurate diagnosis...
June 20, 2023: Computers in Biology and Medicine
https://read.qxmd.com/read/37377320/large-scale-validation-study-of-an-improved-semiautonomous-urine-cytology-assessment-tool-autoparis-x
#258
JOURNAL ARTICLE
Joshua J Levy, Natt Chan, Jonathan D Marotti, Darcy A Kerr, Edward J Gutmann, Ryan E Glass, Caroline P Dodge, Arief A Suriawinata, Brock C Christensen, Xiaoying Liu, Louis J Vaickus
BACKGROUND: Adopting a computational approach for the assessment of urine cytology specimens has the potential to improve the efficiency, accuracy, and reliability of bladder cancer screening, which has heretofore relied on semisubjective manual assessment methods. As rigorous, quantitative criteria and guidelines have been introduced for improving screening practices (e.g., The Paris System for Reporting Urinary Cytology), algorithms to emulate semiautonomous diagnostic decision-making have lagged behind, in part because of the complex and nuanced nature of urine cytology reporting...
June 28, 2023: Cancer Cytopathology
https://read.qxmd.com/read/37365978/identification-and-analysis-of-autism-spectrum-disorder-via-large-scale-dynamic-functional-network-connectivity
#259
JOURNAL ARTICLE
Wenwen Zhuang, Hai Jia, Yunhong Liu, Jing Cong, Kai Chen, Dezhong Yao, Xiaodong Kang, Peng Xu, Tao Zhang
Autism spectrum disorder (ASD) is a prevalent neurodevelopmental disorder with severe cognitive impairment. Several studies have reported that brain functional network connectivity (FNC) has great potential for identifying ASD from healthy control (HC) and revealing the relationships between the brain and behaviors of ASD. However, few studies have explored dynamic large-scale FNC as a feature to identify individuals with ASD. This study used a time-sliding window method to study the dynamic FNC (dFNC) on the resting-state fMRI...
June 27, 2023: Autism Research: Official Journal of the International Society for Autism Research
https://read.qxmd.com/read/37358918/stiffness-and-atomic-scale-friction-in-superlubricant-mos-2-bilayers
#260
JOURNAL ARTICLE
Rui Dong, Alessandro Lunghi, Stefano Sanvito
Molecular dynamics simulations, performed with chemically accurate ab initio machine-learning force fields, are used to demonstrate that layer stiffness has profound effects on the superlubricant state of two-dimensional van der Waals heterostructures. We engineer bilayers of different rigidity but identical interlayer sliding energy surface and show that a 2-fold increase in the intralayer stiffness reduces the friction by a factor of ∼6. Two sliding regimes as a function of the sliding velocity are found...
June 26, 2023: Journal of Physical Chemistry Letters
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