keyword
https://read.qxmd.com/read/38652741/decorin-suppresses-tumor-lymphangiogenesis-a-mechanism-to-curtail-cancer-progression
#21
JOURNAL ARTICLE
Dipon K Mondal, Christopher Xie, Gabriel J Pascal, Simone Buraschi, Renato V Iozzo
The complex interplay between malignant cells and the cellular and molecular components of the tumor stroma is a key aspect of cancer growth and development. These tumor-host interactions are often affected by soluble bioactive molecules such as proteoglycans. Decorin, an archetypical small leucine-rich proteoglycan primarily expressed by stromal cells, affects cancer growth in its soluble form by interacting with several receptor tyrosine kinases (RTK). Overall, decorin leads to a context-dependent and protracted cessation of oncogenic RTK activity by attenuating their ability to drive a prosurvival program and to sustain a proangiogenic network...
April 30, 2024: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/38652739/the-scaffolding-protein-akap12-regulates-mrna-localization-and-translation
#22
JOURNAL ARTICLE
Madeleine R Smith, Parisa Naeli, Seyed M Jafarnejad, Guilherme Costa
Regulation of subcellular messenger (m)RNA localization is a fundamental biological mechanism, which adds a spatial dimension to the diverse layers of post-transcriptional control of gene expression. The cellular compartment in which mRNAs are located may define distinct aspects of the encoded proteins, ranging from production rate and complex formation to localized activity. Despite the detailed roles of localized mRNAs that have emerged over the past decades, the identity of factors anchoring mRNAs to subcellular domains remains ill-defined...
April 30, 2024: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/38652732/optogenetic-manipulation-of-lysosomal-physiology-and-autophagy-dependent-clearance-of-amyloid-beta
#23
JOURNAL ARTICLE
Wenping Zeng, Canjun Li, Ruikun Wu, Xingguo Yang, Qingyan Wang, Bingqian Lin, Yanan Wei, Hao Li, Ge Shan, Lili Qu, Chunlei Cang
Lysosomes are degradation centers of cells and intracellular hubs of signal transduction, nutrient sensing, and autophagy regulation. Dysfunction of lysosomes contributes to a variety of diseases, such as lysosomal storage diseases (LSDs) and neurodegeneration, but the mechanisms are not well understood. Altering lysosomal activity and examining its impact on the occurrence and development of disease is an important strategy for studying lysosome-related diseases. However, methods to dynamically regulate lysosomal function in living cells or animals are still lacking...
April 23, 2024: PLoS Biology
https://read.qxmd.com/read/38652722/identification-of-predictive-patient-characteristics-for-assessing-the-probability-of-covid-19-in-hospital-mortality
#24
JOURNAL ARTICLE
Bartek Rajwa, Md Mobasshir Arshed Naved, Mohammad Adibuzzaman, Ananth Y Grama, Babar A Khan, M Murat Dundar, Jean-Christophe Rochet
As the world emerges from the COVID-19 pandemic, there is an urgent need to understand patient factors that may be used to predict the occurrence of severe cases and patient mortality. Approximately 20% of SARS-CoV-2 infections lead to acute respiratory distress syndrome caused by the harmful actions of inflammatory mediators. Patients with severe COVID-19 are often afflicted with neurologic symptoms, and individuals with pre-existing neurodegenerative disease have an increased risk of severe COVID-19. Although collectively, these observations point to a bidirectional relationship between severe COVID-19 and neurologic disorders, little is known about the underlying mechanisms...
April 2024: PLOS Digit Health
https://read.qxmd.com/read/38652721/predictive-coding-in-musical-anhedonia-a-study-of-groove
#25
JOURNAL ARTICLE
Peter Benson, Nicholas Kathios, Psyche Loui
Groove, or the pleasurable urge to move to music, offers unique insight into the relationship between emotion and action. The predictive coding of music model posits that groove is linked to predictions of music formed over time, with stimuli of moderate complexity rated as most pleasurable and likely to engender movement. At the same time, listeners vary in the pleasure they derive from music listening: individuals with musical anhedonia report reduced pleasure during music listening despite no impairments in music perception and no general anhedonia...
2024: PloS One
https://read.qxmd.com/read/38652719/causal-relationships-of-helicobacter-pylori-and-related-gastrointestinal-diseases-on-type-2-diabetes-univariable-and-multivariable-mendelian-randomization
#26
JOURNAL ARTICLE
Mei Sun, Zhe Zhang, Jingjing Zhang, Juewei Zhang, Zhuqiang Jia, Lin Zhao, Xin Han, Xiaohong Sun, Junwei Zong, Ying Zhu, Shouyu Wang
BACKGROUND: Previous observational studies have demonstrated a connection between the risk of Type 2 diabetes mellitus (T2DM) and gastrointestinal problems brought on by Helicobacter pylori (H. pylori) infection. However, little is understood about how these factors impact on T2DM. METHOD: This study used data from the GWAS database on H. pylori antibodies, gastroduodenal ulcers, chronic gastritis, gastric cancer, T2DM and information on potential mediators: obesity, glycosylated hemoglobin (HbA1c) and blood glucose levels...
2024: PloS One
https://read.qxmd.com/read/38652713/frequency-complications-and-mortality-of-inhalation-injury-in-burn-patients-a-systematic-review-and-meta-analysis-protocol
#27
JOURNAL ARTICLE
Juliana Elvira Herdy Guerra Avila, Levy Aniceto Santana, Denise Rabelo Suzuki, Vinícius Zacarias Maldaner da Silva, Marcio Luís Duarte, Aline Mizusaki Imoto, Fábio Ferreira Amorim
INTRODUCTION: Burns are tissue traumas caused by energy transfer and occur with a variable inflammatory response. The consequences of burns represent a public health problem worldwide. Inhalation injury (II) is a severity factor when associated with burn, leading to a worse prognosis. Its treatment is complex and often involves invasive mechanical ventilation (IMV). The primary purpose of this study will be to assess the evidence regarding the frequency and mortality of II in burn patients...
2024: PloS One
https://read.qxmd.com/read/38652712/hgclamir-hypergraph-contrastive-learning-with-attention-mechanism-and-integrated-multi-view-representation-for-predicting-mirna-disease-associations
#28
JOURNAL ARTICLE
Dong Ouyang, Yong Liang, Jinfeng Wang, Le Li, Ning Ai, Junning Feng, Shanghui Lu, Shuilin Liao, Xiaoying Liu, Shengli Xie
Existing studies have shown that the abnormal expression of microRNAs (miRNAs) usually leads to the occurrence and development of human diseases. Identifying disease-related miRNAs contributes to studying the pathogenesis of diseases at the molecular level. As traditional biological experiments are time-consuming and expensive, computational methods have been used as an effective complement to infer the potential associations between miRNAs and diseases. However, most of the existing computational methods still face three main challenges: (i) learning of high-order relations; (ii) insufficient representation learning ability; (iii) importance learning and integration of multi-view embedding representation...
April 2024: PLoS Computational Biology
https://read.qxmd.com/read/38652706/from-the-archives-on-dna-maintenance-swi-snf-chromatin-remodeling-complexes-dna-damage-repair-and-transposon-excision-repair-mechanisms
#29
JOURNAL ARTICLE
https://read.qxmd.com/read/38652701/raas-in-diabetic-retinopathy-mechanisms-and-therapies
#30
REVIEW
Xin Li, Yu-Hong Fu, Xue-Wei Tong, Yi-Tong Zhang, Yong-Yan Shan, Yu-Xin Xu, Sheng-Dan Pu, Xin-Yuan Gao
Diabetic retinopathy (DR) is a complication of diabetes with a complex pathophysiology and multiple factors involved. Recently, it has been found that the upregulation of the renin-angiotensin-aldosterone system (RAAS) leads to overexpression of angiotensin II (Ang II), which induces oxidative stress, inflammation, and angiogenesis in the retina. Therefore, RAAS may be a promising therapeutic target in DR. Notably, RAAS inhibitors are often used in the treatment of hypertension. Still, the potential role and mechanism of DR must be further studied...
April 19, 2024: Archives of Endocrinology and Metabolism
https://read.qxmd.com/read/38652695/celine-a-long-interspersed-nuclear-element-retrotransposon-colonizes-in-the-centromeres-of-poplar-chromosomes
#31
JOURNAL ARTICLE
Haoyang Xin, Yiduo Wang, Wenli Zhang, Bao Yu, Pavel Neumann, Yihang Ning, Tao Zhang, Yufeng Wu, Ning Jiang, Jiming Jiang, Mengli Xi
Centromeres in most multicellular eukaryotes are composed of long arrays of repetitive DNA sequences. Interestingly, several transposable elements, including the well-known long terminal repeat (LTR) retrotransposon CRM (centromeric retrotransposon of maize), were found to be enriched in functional centromeres marked by the centromeric histone H3 (CENH3). Here we report a centromeric long interspersed nuclear element (LINE), Celine, in Populus species. Celine has colonized preferentially in the CENH3-associated chromatin of every poplar chromosome, with 84% of the Celine elements localized in the CENH3-binding domains...
April 23, 2024: Plant Physiology
https://read.qxmd.com/read/38652693/individual-patient-data-meta-analysis-on-awake-pediatric-extracorporeal-life-support-feasibility-and-safety-of-analgesia-sedation-and-respiratory-support-weaning-and-physiotherapy
#32
REVIEW
Marta Cucchi, Silvia Mariani, Michal J Kawczynski, Emma Shkurka, Fabio Ius, Giuseppe Comentale, Aparna Hoskote, Roberto Lorusso
OBJECTIVE: Awake Extracorporeal Life Support (aECLS) with active mobilization has gained consensus over time, also within the pediatric community. This individual patient data (IPD) meta-analysis summarizes available evidence on pediatric aECLS, its feasibility, and safety regarding sedation weaning, extubation, and physiotherapy. METHODS: PubMed/Medline and Cochrane Database were screened until February 2022. Articles reporting on children (≤18 years) undergoing aECLS were selected...
April 23, 2024: Perfusion
https://read.qxmd.com/read/38652685/electronic-interaction-of-epoxy-resin-with-copper-at-the-adhered-interface
#33
JOURNAL ARTICLE
Shintaro Saeki, Daisuke Kawaguchi, Yuta Tsuji, Satoru Yamamoto, Kazunari Yoshizawa, Keiji Tanaka
A better understanding of the aggregation states of adhesive molecules in the interfacial region with an adherend is crucial for controlling the adhesion strength and is of great inherent academic interest. The adhesion mechanism has been described through four theories: adsorption, mechanical, diffusion, and electronic. While interfacial characterization techniques have been developed to validate the aforementioned theories, that related to the electronic theory has not yet been thoroughly studied. We here directly detected the electronic interaction between a commonly used thermosetting adhesive, cured epoxy of diglycidyl ether of bisphenol A (DGEBA) and 4,4'-diaminodiphenylmethane (DDM), and copper (Cu)...
April 23, 2024: Langmuir: the ACS Journal of Surfaces and Colloids
https://read.qxmd.com/read/38652683/chemical-genetics-in-c-elegans-identifies-anticancer-mycotoxins-chaetocin-and-chetomin-as-potent-inducers-of-a-nuclear-metal-homeostasis-response
#34
JOURNAL ARTICLE
Elijah Abraham, A M Gihan K Athapaththu, Kalina R Atanasova, Qi-Yin Chen, Taylor J Corcoran, Juan Piloto, Cheng-Wei Wu, Ranjala Ratnayake, Hendrik Luesch, Keith P Choe
C. elegans numr-1/2 (<u>nu</u>clear-localized <u>m</u>etal-<u>r</u>esponsive) is an identical gene pair encoding a nuclear protein previously shown to be activated by cadmium and disruption of the integrator RNA metabolism complex. We took a chemical genetic approach to further characterize regulation of this novel metal response by screening 41,716 compounds and extracts for numr-1p::GFP activation. The most potent activator was chaetocin, a fungal 3,6-epidithiodiketopiperazine (ETP) with promising anticancer activity...
April 23, 2024: ACS Chemical Biology
https://read.qxmd.com/read/38652680/the-h3k4-demethylase-jmj1-is-required-for-proper-timing-of-flowering-in-brachypodium-distachyon
#35
JOURNAL ARTICLE
Bing Liu, Chengzhang Li, Xiang Li, Jiachen Wang, Wenhao Xie, Daniel P Woods, Weiya Li, Xiaoyu Zhu, Shuoming Yang, Aiwu Dong, Richard M Amasino
Flowering is a key developmental transition in the plant life cycle. In temperate climates, flowering often occurs in response to the perception of seasonal cues such as changes in day-length and temperature. However, the mechanisms that have evolved to control the timing of flowering in temperate grasses are not fully understood. We identified a Brachypodium distachyon mutant whose flowering is delayed under inductive long-day conditions due to a mutation in the JMJ1 gene, which encodes a Jumonji domain-containing protein...
April 23, 2024: Plant Cell
https://read.qxmd.com/read/38652662/isgylation-by-hercs-facilitates-sting-activation
#36
JOURNAL ARTICLE
Ying Qin, Min Wang, Xintong Meng, Mengge Wang, Haojia Jiang, Yanjie Gao, Jingxin Li, Chunyuan Zhao, Chaofeng Han, Wei Zhao, Xuexing Zheng
Optimal activation of stimulator of interferon genes (STING) protein is crucial for host defenses against pathogens and avoiding detrimental effects. Various post-translational modifications control STING activity. However, the function of interferon (IFN)-stimulated gene (ISG) 15 modification (ISGylation) in controlling STING stability and activation is unclear. Here, we show that the E3 ISGylation ligases HECT domain- and RCC1-like domain-containing proteins (HERCs; HERC5 in humans and HERC6 in mice) facilitate STING activation by mediating ISGylation of STING at K150, preventing its K48-linked ubiquitination and degradation...
April 21, 2024: Cell Reports
https://read.qxmd.com/read/38652660/mapping-of-susceptibility-loci-for-ebola-virus-pathogenesis-in-mice
#37
JOURNAL ARTICLE
Alexandra Schäfer, Andrea Marzi, Wakako Furuyama, Nicholas J Catanzaro, Cameron Nguyen, Elaine Haddock, Friederike Feldmann, Kimberly Meade-White, Tina Thomas, Miranda L Hubbard, Kendra L Gully, Sarah R Leist, Pablo Hock, Timothy A Bell, Gabriela E De la Cruz, Bentley R Midkiff, David R Martinez, Ginger D Shaw, Darla R Miller, Michael J Vernon, Rachel L Graham, Dale O Cowley, Stephanie A Montgomery, Klaus Schughart, Fernando Pardo Manuel de Villena, Gregory K Wilkerson, Martin T Ferris, Heinz Feldmann, Ralph S Baric
Ebola virus (EBOV), a major global health concern, causes severe, often fatal EBOV disease (EVD) in humans. Host genetic variation plays a critical role, yet the identity of host susceptibility loci in mammals remains unknown. Using genetic reference populations, we generate an F2 mapping cohort to identify host susceptibility loci that regulate EVD. While disease-resistant mice display minimal pathogenesis, susceptible mice display severe liver pathology consistent with EVD-like disease and transcriptional signatures associated with inflammatory and liver metabolic processes...
April 21, 2024: Cell Reports
https://read.qxmd.com/read/38652635/exploring-video-denoising-in-thermal-infrared-imaging-physics-inspired-noise-generator-dataset-and-model
#38
JOURNAL ARTICLE
Lijing Cai, Xiangyu Dong, Kailai Zhou, Xun Cao
We endeavor on a rarely explored task named thermal infrared video denoising. Perception in the thermal infrared significantly enhances the capabilities of machine vision. Nonetheless, noise in imaging systems is one of the factors that hampers the large-scale application of equipment. Existing thermal infrared denoising methods, primarily focusing on the image level, inadequately utilize time-domain information and insufficiently conduct investigation of system-level mixed noise, presenting the inferior ability in the video-recorded era; while video denoising methods, commonly applied to RGB cameras, exhibit uncertain effectiveness owing to substantial dissimilarities in the noise models and modalities between RGB and thermal infrared images...
April 23, 2024: IEEE Transactions on Image Processing: a Publication of the IEEE Signal Processing Society
https://read.qxmd.com/read/38652634/effect-of-impact-kinematic-filters-on-brain-strain-responses-in-contact-sports
#39
JOURNAL ARTICLE
Nan Lin, Gregory Tierney, Songbai Ji
OBJECTIVE: Impact kinematics are widely employed to investigate mechanisms of traumatic brain injury (TBI). However, they are susceptible to noise and artefacts; thus, require data filtering. Few studies have focused on how data filtering affects brain strain most relevant to TBI. Here, we report that impact-induced brain strains are much less sensitive to data filtering than kinematics based on three filtering methods: CFC180, lowpass 200Hz, and a new method called Head Exposure to Acceleration Database in Sport (HEADSport)...
April 23, 2024: IEEE Transactions on Bio-medical Engineering
https://read.qxmd.com/read/38652628/multiobjective-evolutionary-learning-for-multitask-quality-prediction-problems-in-continuous-annealing-process
#40
JOURNAL ARTICLE
Chang Liu, Lixin Tang, Kainan Zhang, Xuanqi Xu
In industrial production processes, the mechanical properties of materials will directly determine the stability and consistency of product quality. However, detecting the current mechanical property is time-consuming and labor-intensive, and the material quality cannot be controlled in time. To achieve high-quality steel materials, developing a novel intelligent manufacturing technology that can satisfy multitask predictions for material properties has become a new research trend. This article proposes a multiobjective evolutionary learning method based on a two-stage model with topological sparse autoencoder (TSAE) and ensemble learning...
April 23, 2024: IEEE Transactions on Neural Networks and Learning Systems
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