keyword
https://read.qxmd.com/read/36401279/current-strategies-employed-in-the-manipulation-of-gene-expression-for-clinical-purposes
#21
REVIEW
Hsing-Chuan Tsai, Violena Pietrobon, Maoyu Peng, Suning Wang, Lihong Zhao, Francesco M Marincola, Qi Cai
Abnormal gene expression level or expression of genes containing deleterious mutations are two of the main determinants which lead to genetic disease. To obtain a therapeutic effect and thus to cure genetic diseases, it is crucial to regulate the host's gene expression and restore it to physiological conditions. With this purpose, several molecular tools have been developed and are currently tested in clinical trials. Genome editing nucleases are a class of molecular tools routinely used in laboratories to rewire host's gene expression...
November 18, 2022: Journal of Translational Medicine
https://read.qxmd.com/read/36272085/axolotl-transgenesis-via-injection-of-i-scei-meganuclease-or-tol2-transposon-system
#22
JOURNAL ARTICLE
Maritta Schuez, Tatiana Sandoval-Guzmán
The axolotl (Ambystoma mexicanum ) has been widely used as an animal model for studying development and regeneration. In recent decades, the use of genetic engineering to alter gene expression has advanced our knowledge on the fundamental molecular and cellular mechanisms, pointing us to potential therapeutic targets. We present a detailed, step-by-step protocol for axolotl transgenesis using either I-SceI meganuclease or the mini Tol2 transposon system, by injection of purified DNA into one-cell stage eggs...
2023: Methods in Molecular Biology
https://read.qxmd.com/read/36076925/altered-expression-of-tmem43-causes-abnormal-cardiac-structure-and-function-in-zebrafish
#23
JOURNAL ARTICLE
Miriam Zink, Anne Seewald, Mareike Rohrbach, Andreas Brodehl, Daniel Liedtke, Tatjana Williams, Sarah J Childs, Brenda Gerull
Arrhythmogenic cardiomyopathy (ACM) is an inherited heart muscle disease caused by heterozygous missense mutations within the gene encoding for the nuclear envelope protein transmembrane protein 43 ( TMEM43 ). The disease is characterized by myocyte loss and fibro-fatty replacement, leading to life-threatening ventricular arrhythmias and sudden cardiac death. However, the role of TMEM43 in the pathogenesis of ACM remains poorly understood. In this study, we generated cardiomyocyte-restricted transgenic zebrafish lines that overexpress eGFP -linked full-length human wild-type (WT) TMEM43 and two genetic variants (c...
August 23, 2022: International Journal of Molecular Sciences
https://read.qxmd.com/read/35970322/the-tissue-specificity-associated-region-and-motif-of-an-emx2-downstream-enhancer-cne2-04-in-zebrafish
#24
JOURNAL ARTICLE
Xudong Chen, Qi Zhang, Jia Lin, Yinglan Zhang, Yawen Zhang, Yiting Gui, Ruizhi Zhang, Ting Liu, Qiang Li
BACKGROUND: Expression level of EMX2 plays an important role in the development of nervous system and cancers. CNE2.04, a conserved enhancer downstream of emx2, drives fluorescent protein expression in the similar pattern of emx2. METHODS: CNE2.04 truncated or motif-mutated transgenic reporter plasmids were constructed and injected into the zebrafish fertilized egg with Tol2 mRNA at the unicellular stage of zebrafish eggs. The green fluorescence expression patterns were observed at 24, 48, and 72 hpf, and the fluorescence rates of different tissues were counted at 48 hpf...
August 12, 2022: Gene Expression Patterns: GEP
https://read.qxmd.com/read/35844047/olfactory-placode-generates-a-diverse-population-of-neurons-expressing-gnrh-somatostatin-mrna-neuropeptide-y-or-calbindin-in-the-chick-forebrain
#25
JOURNAL ARTICLE
Shizuko Murakami, Hiroko Ohki-Hamazaki, Yasuo Uchiyama
The olfactory placode (OP) of vertebrates generates several classes of migrating cells, including hypothalamic gonadotropin-releasing hormone (GnRH)-producing neurons, which play essential roles in the reproduction system. Previous studies using OP cell labeling have demonstrated that OP-derived non-GnRH cells enter the developing forebrain; however, their final fates and phenotypes are less well understood. In chick embryos, a subpopulation of migratory cells from the OP that is distinct from GnRH neurons transiently expresses somatostatin (SS)...
December 2022: Journal of Comparative Neurology
https://read.qxmd.com/read/35804091/rapid-reverse-genetics-systems-for-nothobranchius-furzeri-a-suitable-model-organism-to-study-vertebrate-aging
#26
JOURNAL ARTICLE
Masayuki Oginuma, Moana Nishida, Tomomi Ohmura-Adachi, Kota Abe, Shohei Ogamino, Chihiro Mogi, Hideaki Matsui, Tohru Ishitani
The African turquoise killifish Nothobranchius furzeri (N. furzeri) is a useful model organism for studying aging, age-related diseases, and embryonic diapause. CRISPR/Cas9-mediated gene knockout and Tol2 transposon-mediated transgenesis in N. furzeri have been reported previously. However, these methods take time to generate knockout and transgenic fish. In addition, knock-in technology that inserts large DNA fragments as fluorescent reporter constructs into the target gene in N. furzeri has not yet been established...
July 8, 2022: Scientific Reports
https://read.qxmd.com/read/35716957/a-novel-nanoluciferase-transgenic-reporter-measures-proteinuria-in-zebrafish
#27
JOURNAL ARTICLE
Richard W Naylor, Emmanuel Lemarie, Anthony Jackson-Crawford, J Bernard Davenport, Aleksandr Mironov, Martin Lowe, Rachel Lennon
The zebrafish is an important animal system for modeling human diseases. This includes kidney dysfunction as the embryonic kidney (pronephros) shares considerable molecular and morphological homology with the human nephron. A key clinical indicator of kidney disease is proteinuria, but a high-throughput readout of proteinuria in the zebrafish is currently lacking. To remedy this, we used the Tol2 transposon system to generate a transgenic zebrafish line that uses the fabp10a liver-specific promoter to over-express a nanoluciferase molecule fused with the D3 domain of Receptor-Associated Protein (a type of molecular chaperone) which we term NL-D3...
June 15, 2022: Kidney International
https://read.qxmd.com/read/35692259/integrated-behavioral-genetic-and-brain-circuit-visualization-methods-to-unravel-functional-anatomy-of-zebrafish-amygdala
#28
REVIEW
Pradeep Lal, Koichi Kawakami
The mammalian amygdala is a complex forebrain structure consisting of a heterogeneous group of nuclei derived from the pallial and subpallial telencephalon. It plays a critical role in a broad range of behaviors such as emotion, cognition, and social behavior; within the amygdala each nucleus has a distinct role in these behavioral processes. Topological, hodological, molecular, and functional studies suggest the presence of an amygdala-like structure in the zebrafish brain. It has been suggested that the pallial amygdala homolog corresponds to the medial zone of the dorsal telencephalon (Dm) and the subpallial amygdala homolog corresponds to the nuclei in the ventral telencephalon located close to and topographically basal to Dm...
2022: Frontiers in Neuroanatomy
https://read.qxmd.com/read/35661653/loss-of-function-approach-in-the-embryonic-chick-retina-by-using-tol2-transposon-mediated-transgenic-expression-of-artificial-micrornas
#29
JOURNAL ARTICLE
Chizu Makino Nakamoto, Masaru Nakamoto
The chick retina has long been an important model system in developmental neurobiology, with advantages including its large size, rapid development, and accessibility for visualization and experimental manipulations. However, its major technical limitation had been the lack of robust loss-of-function approaches for gene function analyses. This protocol describes a methodology of gene silencing in the developing chick retina that involves transgenic expression of artificial microRNAs (miRNAs) by using the Tol2 transposon system...
May 18, 2022: Journal of Visualized Experiments: JoVE
https://read.qxmd.com/read/35477562/application-of-transposon-systems-in-the-transgenesis-of-bovine-somatic-and-germ-cells
#30
JOURNAL ARTICLE
Dong-Hyeok Kwon, Gyeong-Min Gim, Kyeong-Hyeon Eom, Ji-Hyun Lee, Goo Jang
BACKGROUND: Several DNA transposons including PiggyBac (PB), Sleeping Beauty (SB), and Tol2 have been applied as effective means for of transgenesis in many species. Cattle are not typically experimental animals, and relatively little verification has been presented on this species. Thus, the goal here was to determine the applicability of three transposon systems in somatic and embryo cells in cattle, while also investigating which of the three systems is appropriate for each cell type...
April 27, 2022: BMC Veterinary Research
https://read.qxmd.com/read/35099751/finding-and-verifying-enhancers-for-endothelial-expressed-genes
#31
JOURNAL ARTICLE
Alice Neal, Helena Rodriguez-Caro, Sarah De Val
Identification and analysis of enhancers for endothelial-expressed genes can provide crucial information regarding their upstream transcriptional regulators. However, enhancer identification can be challenging, particularly for people with limited access or experience of bioinformatics, and transgenic analysis of enhancer activity patterns can be prohibitively expensive. Here we describe how to use publicly available datasets displayed on the UCSC Genome Browser to identify putative endothelial enhancers for mammalian genes...
2022: Methods in Molecular Biology
https://read.qxmd.com/read/34995793/an-enhancer-trap-zebrafish-line-for-lateral-line-development-and-regulation-of-six2b-expression
#32
JOURNAL ARTICLE
Chunxin Fan, Yajing Ouyang, Xiaoyi Yuan, Jian Wang
Zebrafish lateral line system which is derived from neurogenic placodes has become a popular model for developmental biology since its formation involves cell migration, pattern formation, organogenesis, and hair cell regeneration. Transgenic lines play a crucial role in lateral line system study. Here, we identified an enhancer trap transgenic zebrafish line Et(gata2a:EGFP)189b (ET189b for short), which expressed enhanced green fluorescent protein (EGFP) in the pituitary, otic, and lateral line placodes and their derivatives...
March 2022: Gene Expression Patterns: GEP
https://read.qxmd.com/read/34948305/calcium-signaling-in-the-cerebellar-radial-glia-and-its-association-with-morphological-changes-during-zebrafish-development
#33
JOURNAL ARTICLE
Elizabeth Pereida-Jaramillo, Gabriela B Gómez-González, Angeles Edith Espino-Saldaña, Ataúlfo Martínez-Torres
Radial glial cells are a distinct non-neuronal cell type that, during development, span the entire width of the brain walls of the ventricular system. They play a central role in the origin and placement of neurons, since their processes form structural scaffolds that guide and facilitate neuronal migration. Furthermore, glutamatergic signaling in the radial glia of the adult cerebellum (i.e., Bergmann glia), is crucial for precise motor coordination. Radial glial cells exhibit spontaneous calcium activity and functional coupling spread calcium waves...
December 16, 2021: International Journal of Molecular Sciences
https://read.qxmd.com/read/34529924/the-medaka-fish-tol2-transposable-element-is-in-an-early-stage-of-decay-identification-of-a-nonautonomous-copy
#34
JOURNAL ARTICLE
Sakura Hayashi, Takuji Tsukiyama, Atsuo Iida, Masato Kinoshita, Akihiko Koga
The majority of DNA-based transposable elements comprise autonomous and nonautonomous copies, or only nonautonomous copies, where the autonomous copy contains an intact gene for a transposase protein and the nonautonomous copy does not. Even if autonomous copies coexist, they are generally less frequent. The Tol2 element of medaka fish is one of the few elements for which a nonautonomous copy has not yet been found. Here we report the presence of a nonautonomous Tol2 copy that was identified by surveying the medaka genome sequence database...
September 16, 2021: Genome Génome / Conseil National de Recherches Canada
https://read.qxmd.com/read/34458263/a-potential-method-for-rapid-screening-of-amphioxus-founder-harboring-germline-mutation-and-transgene
#35
JOURNAL ARTICLE
Jiaqi Zou, Xiaotong Wu, Chenggang Shi, Yanhong Zhong, Lei Zhang, Qiuning Yan, Liuru Su, Guang Li
Amphioxus is a promising model organism for understanding the origin and evolution of vertebrates due to its basal phylogenetic position among chordates. We here compared the mutation efficacy and mutation type of tail tips and gametes of amphioxus founders injected with Cas9 protein and six different sgRNAs targeting five distinct genes, and revealed a strong correlation for mutation efficacy and a mild correlation for mutation type among the two tissues. In addition, we also observed a positive relationship between gene insertions observed in tail tips and gametes of amphioxus founders injected with Tol2 transposase and two different transgenic constructs...
2021: Frontiers in Cell and Developmental Biology
https://read.qxmd.com/read/34236036/-progress-in-piggybac-transposition-system-research-and-its-application-in-the-gene-modified-t-cell-in-tumor-immunotherapy
#36
JOURNAL ARTICLE
Tuo Zhou, Zhenhua Jiang, Shuangyin Han
The tumor immunotherapy with gene modified T cells has made inspiring progress in recent years. Foreign gene transduction is the key link before the adoptive transfer of T cells. Advances in this field enhance T cells vitality and achieve precise targeted killing of tumor cells. T cell gene modification technology needs to strike a balance between transduction efficiency, safety, and cost. Transposons are with low immunogenicity, easy to manufacture, and cost-effective. They integrate the gene of interest into the target cell genome and allow stable and durable expression...
August 2021: Xi Bao Yu Fen Zi Mian Yi Xue za Zhi, Chinese Journal of Cellular and Molecular Immunology
https://read.qxmd.com/read/34201194/in-vitro-inhibition-of-influenza-virus-using-crispr-cas13a-in-chicken-cells
#37
JOURNAL ARTICLE
Arjun Challagulla, Karel A Schat, Timothy J Doran
Advances in the field of CRISPR/Cas systems are expanding our ability to modulate cellular genomes and transcriptomes precisely and efficiently. Here, we assessed the Cas13a-mediated targeted disruption of RNA in chicken fibroblast DF1 cells. First, we developed a Tol2 transposon vector carrying the Cas13a-msGFP-NLS (pT-Cas13a) transgene, followed by a stable insertion of the Cas13a transgene into the genome of DF1 cells to generate stable DF1-Cas13a cells. To assess the Cas13a-mediated functional knockdown, DF1-Cas13a cells were transfected with the combination of a plasmid encoding DsRed coding sequence (pDsRed) and DsRed-specific crRNA (crRNA-DsRed) or non-specific crRNA (crRNA-NS)...
June 8, 2021: Methods and Protocols
https://read.qxmd.com/read/34189725/germ-cell-specific-expression-of-venus-by-tol2-mediated-transgenesis-in-endangered-endemic-cyprinid-honmoroko-gnathopogon-caerulescens
#38
JOURNAL ARTICLE
Shogo Higaki, Tomomi Nishie, Takaaki Todo, Reiko Teshima, Kenichiro Kusumi, Risa Mitsumori, Ikuo Tooyama, Yasuhiro Fujioka, Toshihiro Kawasaki, Noriyoshi Sakai, Tatsuyuki Takada
Fishes expressing a fluorescent protein in germ cells are useful to perform germ cell transfer experiments for conservation study. However, no such fish has been generated in endangered endemic fishes. In this study, we tried to generate a fish expressing Venus fluorescent protein in germ cells using Honmoroko (Gnathopogon caerulescens), which is one of the threatened small cyprinid endemic to ancient Lake Biwa in Japan. To achieve germ cell-specific expression of Venus, we used piwil1 (formally known as ziwi) promoter and Tol2 transposon system...
June 29, 2021: Journal of Fish Biology
https://read.qxmd.com/read/34123588/first-body-of-evidence-suggesting-a-role-of-a-tankyrase-binding-motif-tbm-of-vinculin-vcl-in-epithelial-cells
#39
JOURNAL ARTICLE
Salomé Vilchez Larrea, Wanda Mariela Valsecchi, Silvia H Fernández Villamil, Laura I Lafon Hughes
BACKGROUND: Adherens junctions (AJ) are involved in cancer, infections and neurodegeneration. Still, their composition has not been completely disclosed. Poly(ADP-ribose) polymerases (PARPs) catalyze the synthesis of poly(ADP-ribose) (PAR) as a posttranslational modification. Four PARPs synthesize PAR, namely PARP-1/2 and Tankyrase-1/2 (TNKS). In the epithelial belt, AJ are accompanied by a PAR belt and a subcortical F-actin ring. F-actin depolymerization alters the AJ and PAR belts while PARP inhibitors prevent the assembly of the AJ belt and cortical actin...
2021: PeerJ
https://read.qxmd.com/read/34064900/contemporary-transposon-tools-a-review-and-guide-through-mechanisms-and-applications-of-sleeping-beauty-piggybac-and-tol2-for-genome-engineering
#40
REVIEW
Nicolás Sandoval-Villegas, Wasifa Nurieva, Maximilian Amberger, Zoltán Ivics
Transposons are mobile genetic elements evolved to execute highly efficient integration of their genes into the genomes of their host cells. These natural DNA transfer vehicles have been harnessed as experimental tools for stably introducing a wide variety of foreign DNA sequences, including selectable marker genes, reporters, shRNA expression cassettes, mutagenic gene trap cassettes, and therapeutic gene constructs into the genomes of target cells in a regulated and highly efficient manner. Given that transposon components are typically supplied as naked nucleic acids (DNA and RNA) or recombinant protein, their use is simple, safe, and economically competitive...
May 11, 2021: International Journal of Molecular Sciences
keyword
keyword
2978
2
3
Fetch more papers »
Fetching more papers... Fetching...
Remove bar
Read by QxMD icon Read
×

Save your favorite articles in one place with a free QxMD account.

×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"

We want to hear from doctors like you!

Take a second to answer a survey question.