keyword
https://read.qxmd.com/read/38601019/the-generation-and-characterization-of-a-transgenic-zebrafish-line-with-lens-specific-cre-expression
#1
JOURNAL ARTICLE
Xuyan Peng, Xiaolin Jia, Guohui Shang, Mengjiao Xue, Mingjun Jiang, Dandan Chen, Fengyan Zhang, Yanzhong Hu
PURPOSE: Danio rerio zebrafish constitute a popular model for studying lens development and congenital cataracts. However, the specific deletion of a gene with a Cre/LoxP system in the zebrafish lens is unavailable because of the lack of a lens-Cre-transgenic zebrafish. This study aimed to generate a transgenic zebrafish line in which Cre recombinase was specifically expressed in the lens. METHODS: The pTol2 cryaa :Cre-polyA- cryaa :EGFP (enhanced green fluorescent protein) plasmid was constructed and co-injected with Tol2-transposase into one-to-two-cell-stage wild-type (WT) zebrafish embryos...
2024: Molecular Vision
https://read.qxmd.com/read/38314924/the-dwarf-neon-rainbowfish-melanotaenia-praecox-a-small-spiny-rayed-fish-with-potential-as-a-new-acanthomorpha-model-fish-ii-establishment-of-a-microinjection-procedure-for-genetic-engineering
#2
JOURNAL ARTICLE
Kazuhide Miyamoto, Gembu Abe, Koichi Kawakami, Koji Tamura, Satoshi Ansai
BACKGROUND: Rainbowfish is a clade of colorful freshwater fish. Melanotaenia praecox is a small rainbowfish species with biological characteristics that make it potentially useful as an experimental model species. We anticipate that M. praecox could become a new model used in various fields, such as ecology, evolution, and developmental biology. However, few previous studies have described experimental set-ups needed to understand the molecular and genetic mechanisms within this species...
February 5, 2024: Developmental Dynamics
https://read.qxmd.com/read/38228108/identification-and-functional-study-of-enhancers-of-eya1-the-causative-gene-of-branchio-oto-renal-syndrome
#3
JOURNAL ARTICLE
Feng Wang, Ruizhi Zhang, Jing Jian, Yanhe Sun, Qiang Li
INTRODUCTION: Branchio-oto-renal syndrome (BOR syndrome) is a rare genetic disorder with an incidence of 1 in 40,000, affecting the development of multiple organs, including the branchio, ear and kidney. It is responsible for 2% of childhood deafness. Currently, variants in the coding regions of the main causative genes, such as EYA1, SIX1, and SIX5, explain only half of the disease's etiology. Therefore, there is a need to explore the non-coding regions, which constitute the majority of the genome, especially the regulatory regions, as potential new causative factors...
January 16, 2024: Developmental Neuroscience
https://read.qxmd.com/read/38106217/-piglet-safe-harbor-landing-sites-for-reproducible-and-efficient-transgenesis-in-zebrafish
#4
Robert L Lalonde, Harrison H Wells, Cassie L Kemmler, Susan Nieuwenhuize, Raymundo Lerma, Alexa Burger, Christian Mosimann
UNLABELLED: Standard methods for transgenesis in zebrafish depend on random transgene integration into the genome followed by resource-intensive screening and validation. Targeted vector integration into validated genomic loci using phiC31 integrase-based attP / attB recombination has transformed mouse and Drosophila transgenesis. However, while the phiC31 system functions in zebrafish, validated loci carrying attP -based landing or safe harbor sites suitable for universal transgenesis applications in zebrafish have not been established...
December 12, 2023: bioRxiv
https://read.qxmd.com/read/37838209/expression-and-functional-analysis-of-fam76b-in-zebrafish
#5
JOURNAL ARTICLE
Jiuling Zhu, Jiahang Yang, He Wen, Mengtian Wang, Xiaojing Zheng, Junli Zhao, Xiaohong Sun, Peiyan Yang, Qinwen Mao, Yu Li, Haibin Xia
FAM76B is nuclear speckle-localized protein with a molecular weight of 39 kDa. The amino sequence of FAM76B protein is highly conserved among species, suggesting that FAM76B has important biological functions. However, the biological function of FAM76B is currently still unclear. To explore the biological function of FAM76B, we firstly used zebrafish as the experimental model to study the distribution and expression level of Fam76b. The results indicated that fam76b is highly expressed in hematopoiesis and immune systems of zebrafish by real-time quantitative PCR, in situ hybridization and Tg(fam76b: eGFP) transgenic zebrafish...
October 12, 2023: Fish & Shellfish Immunology
https://read.qxmd.com/read/37714372/depletion-of-igfbp7-alleviates-zebrafish-nafld-progression-through-inhibiting-hepatic-ferroptosis
#6
JOURNAL ARTICLE
Yanqin Wang, Jiaqi Bo, Zhonghua Zhao, Yuhang Han, Qianqian Zhang, Lixin Liu
AIMS: The global increased expression of Insulin-like growth factor binding protein 7 (IGFBP7) has been detected in non-alcoholic fatty liver disease (NAFLD) patients, however, its roles in NAFLD and the mechanism remain largely unclear. The goal of this study is to investigate the effect and mechanism of Igfbp7 using a zebrafish NAFLD model. MAIN METHODS: The igfbp7-/- null zebrafish mutant and the Igfbp7 liver overexpressed (LOE) transgenic zebrafish based on Gal4/UAS system were generated by CRISPR/Cas9 and Tol2 transgenic technique, respectively...
September 13, 2023: Life Sciences
https://read.qxmd.com/read/37601640/optimising-the-zebrafish-cre-lox-toolbox-codon-improved-icre-new-gateway-tools-cre-protein-and-guidelines
#7
JOURNAL ARTICLE
Alisha Tromp, Haitao Wang, Thomas E Hall, Bryan Mowry, Jean Giacomotto
We recently introduced the Cre/Lox technology in our laboratory for both transient (mRNA injections) and stable/transgenic experiments. We experienced significant issues such as silencing, mosaicism, and partial recombination using both approaches. Reviewing the literature gave us the impression that these issues are common among the zebrafish community using the Cre/Lox system. While some researchers took advantage of these problems for specific applications, such as cell and lineage tracing using the Zebrabow construct, we tried here to improve the efficiency and reliability of this system by constituting and testing a new set of tools for zebrafish genetics...
2023: Frontiers in Physiology
https://read.qxmd.com/read/37545763/genetic-manipulation-of-betta-fish
#8
JOURNAL ARTICLE
Alec Palmiotti, Madison R Lichak, Pei-Yin Shih, Young Mi Kwon, Andres Bendesky
Betta splendens, also known as Siamese fighting fish or "betta," is a freshwater fish species renowned for its astonishing morphological diversity and extreme aggressive behavior. Despite recent advances in our understanding of the genetics and neurobiology of betta, the lack of tools to manipulate their genome has hindered progress at functional and mechanistic levels. In this study, we outline the use of three genetic manipulation technologies, which we have optimized for use in betta: CRISPR/Cas9-mediated knockout, CRISPR/Cas9-mediated knockin, and Tol2-mediated transgenesis...
2023: Frontiers in genome editing
https://read.qxmd.com/read/37293264/optogenetic-control-of-gut-movements-reveals-peristaltic-wave-mediated-induction-of-cloacal-contractions-and-reactivation-of-impaired-gut-motility
#9
JOURNAL ARTICLE
Yuuki Shikaya, Masafumi Inaba, Ryosuke Tadokoro, Shota Utsunomiya, Yoshiko Takahashi
Gut peristalsis, recognized as a wave-like progression along the anterior-posterior gut axis, plays a pivotal role in the transportation, digestion, and absorption of ingested materials. The embryonic gut, which has not experienced ingested materials, undergoes peristalsis offering a powerful model for studying the intrinsic mechanisms underlying the gut motility. It has previously been shown in chicken embryos that acute contractions of the cloaca (an anus-like structure) located at the posterior end of the hindgut are tightly coupled with the arrival of hindgut-derived waves...
2023: Frontiers in Physiology
https://read.qxmd.com/read/37176020/modeling-human-muscular-dystrophies-in-zebrafish-mutant-lines-transgenic-fluorescent-biosensors-and-phenotyping-assays
#10
REVIEW
Chiara Tesoriero, Francesca Greco, Elena Cannone, Francesco Ghirotto, Nicola Facchinello, Marco Schiavone, Andrea Vettori
Muscular dystrophies (MDs) are a heterogeneous group of myopathies characterized by progressive muscle weakness leading to death from heart or respiratory failure. MDs are caused by mutations in genes involved in both the development and organization of muscle fibers. Several animal models harboring mutations in MD-associated genes have been developed so far. Together with rodents, the zebrafish is one of the most popular animal models used to reproduce MDs because of the high level of sequence homology with the human genome and its genetic manipulability...
May 5, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/37165015/efficient-production-of-recombinant-proteins-in-suspension-cho-cells-culture-using-the-tol2-transposon-system-coupled-with-cycloheximide-resistance-selection
#11
JOURNAL ARTICLE
Keina Yamaguchi, Risa Ogawa, Masayoshi Tsukahara, Koichi Kawakami
DNA recombination techniques in mammalian cells has been applied to the production of therapeutic proteins for several decades. To be used for commercial production, established cell lines should stably express target proteins with high productivity and acceptable quality for human use. In the conventional transfection method, the screening process is laborious and time-consuming since superior cell lines had to be selected from an enormous number of transfected cell pools and clonal cell lines with a wide variety of transgene insertion locations...
May 10, 2023: Scientific Reports
https://read.qxmd.com/read/37154340/-construction-of-fluorescent-transgenic-zebrafish-tg-ttn-2-egfp
#12
JOURNAL ARTICLE
Jiale Chen, Qiuxiang Cao, Hui Cao, Xiangding Chen, Yun Deng
In order to develop a transgenic zebrafish line with green fluorescent protein (enhanced green fluorescent protein, EGFP) expressed specifically in muscle and heart, the recombinant expression vector constructed using the zebrafish ttn . 2 gene promoter fragment and EGFP gene coding sequence and the capped mRNA of Tol2 transposase were co-injected into the zebrafish 1-cell stage embryos. The stable genetic Tg ( ttn . 2 : EGFP) transgenic zebrafish line was successfully developed by fluorescence detection, followed by genetic hybridization screening and molecular identification...
April 25, 2023: Sheng Wu Gong Cheng Xue Bao, Chinese Journal of Biotechnology
https://read.qxmd.com/read/37100470/efficient-transgenesis-in-african-turquoise-killifish-using-a-gibson-assembly-based-tol2-transposon-system
#13
JOURNAL ARTICLE
Yufei Lou, Weifeng Lin, Wei Wang
The short-lived African killifish Nothobranchius furzeri is an attractive genetic model for vertebrate aging and regeneration studies. The utilization of genetically modified animals is a common strategy for unveiling molecular mechanisms responsible for a biological phenomenon. Here, we report a highly efficient protocol for generating transgenic African killifish using the Tol2 transposon system, which creates random insertions in the genome. Transgenic vectors carrying gene-expression cassettes of interest and an eye-specific marker for transgene identification can be quickly assembled through Gibson assembly...
April 26, 2023: Cold Spring Harbor Protocols
https://read.qxmd.com/read/37097020/the-control-of-breathing-in-fishes-historical-perspectives-and-the-path-ahead
#14
JOURNAL ARTICLE
Yihang Kevin Pan, Steve F Perry
The study of breathing in fishes has featured prominently in Journal of Experimental Biology (JEB), particularly during the latter half of the past century. Indeed, many of the seminal discoveries in this important sub-field of comparative respiratory physiology were reported first in JEB. The period spanning 1960-1990 (the 'golden age of comparative respiratory physiology') witnessed intense innovation in the development of methods to study the control of breathing. Many of the guiding principles of piscine ventilatory control originated during this period, including our understanding of the dominance of O2 as the driver of ventilation in fish...
April 15, 2023: Journal of Experimental Biology
https://read.qxmd.com/read/36975217/next-generation-plasmids-for-transgenesis-in-zebrafish-and-beyond
#15
JOURNAL ARTICLE
Cassie L Kemmler, Hannah R Moran, Brooke F Murray, Aaron Scoresby, John R Klem, Rachel L Eckert, Elizabeth Lepovsky, Sylvain Bertho, Susan Nieuwenhuize, Sibylle Burger, Gianluca D'Agati, Charles Betz, Ann-Christin Puller, Anastasia Felker, Karolina Ditrychova, Seraina Bötschi, Markus Affolter, Nicolas Rohner, C Ben Lovely, Kristen M Kwan, Alexa Burger, Christian Mosimann
Transgenesis is an essential technique for any genetic model. Tol2-based transgenesis paired with Gateway-compatible vector collections has transformed zebrafish transgenesis with an accessible, modular system. Here, we established several next-generation transgenesis tools for zebrafish and other species to expand and enhance transgenic applications. To facilitate gene-regulatory element testing, we generated Gateway middle entry vectors harboring the small mouse beta-globin minimal promoter coupled to several fluorophores, CreERT2, and Gal4...
March 28, 2023: Development
https://read.qxmd.com/read/36876986/one-step-generation-of-mice-with-gene-editing-by-tol2-transposon-dependent-grna-delivery
#16
JOURNAL ARTICLE
Maiko Inotsume, Tomoki Chiba, Takahide Matsushima, Ryota Kurimoto, Mitsuyo Nakajima, Tomomi Kato, Kana Shishido, Lin Liu, Koichi Kawakami, Hiroshi Asahara
Conditional knockout mice are valuable tools for examining the functions of targeted genes in a time- and space-specific manner. Here, we generated gene-edited mice by using the Tol2 transposon to introduce guide RNA (gRNA) into fertilized eggs obtained by crossing LSL (loxP-stop-loxP)-Cas9 mice, which express Cas9 in a Cre-dependent manner, with CAG-CreER mice. Transposase mRNA and plasmid DNA, which contained a gRNA sequence for the gene encoding tyrosinase flanked by the transposase recognition sequence, were injected together into fertilized eggs...
March 6, 2023: FEBS Letters
https://read.qxmd.com/read/36824853/genetic-manipulation-of-betta-fish
#17
Alec Palmiotti, Madison R Lichak, Pei-Yin Shih, Andres Bendesky
Betta splendens , also known as Siamese fighting fish or 'betta', are renowned for their astonishing morphological diversity and extreme aggressive behavior. Despite recent advances in our understanding of the genetics and neurobiology of betta, the lack of tools to manipulate their genome has hindered progress at functional and mechanistic levels. In this study, we outline the use of three genetic manipulation technologies, which we have optimized for use in betta: CRISPR/Cas9-mediated knockout, CRISPR/Cas9-mediated knockin, and Tol2-mediated transgenesis...
February 16, 2023: bioRxiv
https://read.qxmd.com/read/36680287/exploring-the-expression-and-function-of-ctyro3-a-candidate-zika-virus-receptor-in-the-embryonic-chicken-brain-and-inner-ear
#18
JOURNAL ARTICLE
Vashi Negi, Richard J Kuhn, Donna M Fekete
The transmembrane protein Axl was proposed as an entry receptor for Zika virus (ZIKV) infection in vitro, but conflicting results from in vivo studies have made it difficult to establish Axl as a physiologically relevant ZIKV receptor. Both the functional redundancy of receptors and the experimental model used can lead to variable results. Therefore, it can be informative to explore alternative animal models to analyze ZIKV receptor candidates as an aid in discovering antivirals. This study used chicken embryos to examine the role of chicken Tyro3 (cTyro3), the equivalent of human Axl...
January 15, 2023: Viruses
https://read.qxmd.com/read/36533820/the-zebrafish-tol2-system-a-modular-and-flexible-gateway-based-transgenesis-approach
#19
JOURNAL ARTICLE
John R Klem, Raèden Gray, C Ben Lovely
Fetal alcohol spectrum disorders (FASD) are characterized by a highly variable set of structural defects and cognitive impairments that arise due to prenatal ethanol exposure. Due to the complex pathology of FASD, animal models have proven critical to our current understanding of ethanol-induced developmental defects. Zebrafish have proven to be a powerful model to examine ethanol-induced developmental defects due to the high degree of conservation of both genetics and development between zebrafish and humans...
November 30, 2022: Journal of Visualized Experiments: JoVE
https://read.qxmd.com/read/36500435/phase-transitions-and-stabilities-among-three-phases-of-di-p-tolyl-disulfides
#20
JOURNAL ARTICLE
Imran Ali, Yanqiang Han, Jinjin Li
Di-p-tolyl disulfides (p-Tol2 S2 ) are employed as load-carrying additives because of their anti-wear and extreme load-bearing qualities. External pressure triggers conformational up-conversion (leads to phase transition) in the molecules of p-Tol2 S2 , by compensating for the stress and absorbing its energy. These features make p-Tol2 S2 a potential candidate for next-generation energy storage devices. Upon lithiation, MoS2 expands up to 103% which causes stress and affects battery stability and performance...
November 30, 2022: Molecules: a Journal of Synthetic Chemistry and Natural Product Chemistry
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